BLASTX nr result
ID: Coptis24_contig00004008
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00004008 (491 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002283987.1| PREDICTED: 50S ribosomal protein 5, chloropl... 65 6e-09 emb|CBI32867.3| unnamed protein product [Vitis vinifera] 65 8e-09 ref|XP_002878118.1| hypothetical protein ARALYDRAFT_486132 [Arab... 63 3e-08 ref|NP_191250.1| plastid-specific 50S ribosomal protein 5 [Arabi... 62 4e-08 ref|XP_004144312.1| PREDICTED: 50S ribosomal protein 5, chloropl... 60 2e-07 >ref|XP_002283987.1| PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Vitis vinifera] Length = 144 Score = 65.1 bits (157), Expect = 6e-09 Identities = 52/127 (40%), Positives = 65/127 (51%), Gaps = 8/127 (6%) Frame = -1 Query: 458 SMSVTATPMSILQRKAINLKPKSSYNNVLRVC--THLERGALVVRAASLDIDG--SDAGT 291 +M++TATP+S K + KS +N V T +R ++V+A+S D+DG D G Sbjct: 20 TMAITATPVSRFLVKPNDTHLKS-FNGVRLHAPFTVKQRDGVIVKASS-DVDGVAPDGGE 77 Query: 290 T----EPETVPVEKLPLESKKQLLLEAXXXXXXXXXXXXXXXXXXXXXXXXKIGRWPPSK 123 T E + VPVE LPLESK QL LE K GRWPPSK Sbjct: 78 TASEGEEDVVPVENLPLESKLQLKLEQKLRMKIAKKIRLRRKRLVRKRRMRKKGRWPPSK 137 Query: 122 MKKNKNV 102 MKKNKNV Sbjct: 138 MKKNKNV 144 >emb|CBI32867.3| unnamed protein product [Vitis vinifera] Length = 124 Score = 64.7 bits (156), Expect = 8e-09 Identities = 52/126 (41%), Positives = 64/126 (50%), Gaps = 8/126 (6%) Frame = -1 Query: 455 MSVTATPMSILQRKAINLKPKSSYNNVLRVC--THLERGALVVRAASLDIDG--SDAGTT 288 M++TATP+S K + KS +N V T +R ++V+A+S D+DG D G T Sbjct: 1 MAITATPVSRFLVKPNDTHLKS-FNGVRLHAPFTVKQRDGVIVKASS-DVDGVAPDGGET 58 Query: 287 ----EPETVPVEKLPLESKKQLLLEAXXXXXXXXXXXXXXXXXXXXXXXXKIGRWPPSKM 120 E + VPVE LPLESK QL LE K GRWPPSKM Sbjct: 59 ASEGEEDVVPVENLPLESKLQLKLEQKLRMKIAKKIRLRRKRLVRKRRMRKKGRWPPSKM 118 Query: 119 KKNKNV 102 KKNKNV Sbjct: 119 KKNKNV 124 >ref|XP_002878118.1| hypothetical protein ARALYDRAFT_486132 [Arabidopsis lyrata subsp. lyrata] gi|297323956|gb|EFH54377.1| hypothetical protein ARALYDRAFT_486132 [Arabidopsis lyrata subsp. lyrata] Length = 148 Score = 62.8 bits (151), Expect = 3e-08 Identities = 48/128 (37%), Positives = 65/128 (50%), Gaps = 8/128 (6%) Frame = -1 Query: 461 LSMSVTATPMSILQRKAINLKPKSSYNNVLRVCTHLERGALVVRAASLDIDGSDAGTTE- 285 L S A+P+ L+ A+ K + S + +H A+VV+AA+ +DG++ + E Sbjct: 21 LQPSSFASPVWSLKPNAVESKNRVSLSAYSLNSSHGRAVAIVVKAAASGVDGAEPESNEE 80 Query: 284 PETV----PVEKLPLESKK---QLLLEAXXXXXXXXXXXXXXXXXXXXXXXXKIGRWPPS 126 P TV PV+KLPLESK+ +LLLE K GRWPPS Sbjct: 81 PNTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRLRRKRLVRKRRMRKKGRWPPS 140 Query: 125 KMKKNKNV 102 KMKKNKNV Sbjct: 141 KMKKNKNV 148 >ref|NP_191250.1| plastid-specific 50S ribosomal protein 5 [Arabidopsis thaliana] gi|75173974|sp|Q9LER7.1|PSRP5_ARATH RecName: Full=50S ribosomal protein 5, chloroplastic; AltName: Full=Plastid-specific 50S ribosomal protein 5; Short=PSRP-5; Flags: Precursor gi|9663010|emb|CAC00754.1| ribosomal protein, chloroplast [Arabidopsis thaliana] gi|48310581|gb|AAT41842.1| At3g56910 [Arabidopsis thaliana] gi|332646064|gb|AEE79585.1| plastid-specific 50S ribosomal protein 5 [Arabidopsis thaliana] Length = 148 Score = 62.4 bits (150), Expect = 4e-08 Identities = 55/147 (37%), Positives = 74/147 (50%), Gaps = 17/147 (11%) Frame = -1 Query: 491 ALLQIFSAPPLSMSVTATPMSILQRKA-----INLKPKS--SYNNVLRVCTHLE--RGAL 339 ALL S P LS +++ +LQ + ++LKP + S N V L G + Sbjct: 2 ALLCFNSLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESKNRVSLSAYSLNSSHGRI 61 Query: 338 VVRAASLDIDGSDAGTTE-PETV----PVEKLPLESKK---QLLLEAXXXXXXXXXXXXX 183 VV+AA+ +DG++ + E P+TV PV+KLPLESK+ +LLLE Sbjct: 62 VVKAAASGVDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRLR 121 Query: 182 XXXXXXXXXXXKIGRWPPSKMKKNKNV 102 K GRWPPSKMKKNKNV Sbjct: 122 RKRLVRKRKMRKKGRWPPSKMKKNKNV 148 >ref|XP_004144312.1| PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Cucumis sativus] Length = 153 Score = 60.1 bits (144), Expect = 2e-07 Identities = 53/131 (40%), Positives = 61/131 (46%), Gaps = 9/131 (6%) Frame = -1 Query: 467 PPLSMSVTATPMSILQRKAINLKPKSSYNNVLRVCTHLERGA-LVVRAASL-----DIDG 306 PP S A P S+L K I +PK LR + +E A LVV+AAS + D Sbjct: 27 PPTS----AIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDS 82 Query: 305 SD---AGTTEPETVPVEKLPLESKKQLLLEAXXXXXXXXXXXXXXXXXXXXXXXXKIGRW 135 SD A + E VPV+KLPLESK Q LE K GRW Sbjct: 83 SDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRW 142 Query: 134 PPSKMKKNKNV 102 PPSKMKK KNV Sbjct: 143 PPSKMKKLKNV 153