BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004008
         (491 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283987.1| PREDICTED: 50S ribosomal protein 5, chloropl...    65   6e-09
emb|CBI32867.3| unnamed protein product [Vitis vinifera]               65   8e-09
ref|XP_002878118.1| hypothetical protein ARALYDRAFT_486132 [Arab...    63   3e-08
ref|NP_191250.1| plastid-specific 50S ribosomal protein 5 [Arabi...    62   4e-08
ref|XP_004144312.1| PREDICTED: 50S ribosomal protein 5, chloropl...    60   2e-07

>ref|XP_002283987.1| PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Vitis
           vinifera]
          Length = 144

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 52/127 (40%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
 Frame = -1

Query: 458 SMSVTATPMSILQRKAINLKPKSSYNNVLRVC--THLERGALVVRAASLDIDG--SDAGT 291
           +M++TATP+S    K  +   KS +N V      T  +R  ++V+A+S D+DG   D G 
Sbjct: 20  TMAITATPVSRFLVKPNDTHLKS-FNGVRLHAPFTVKQRDGVIVKASS-DVDGVAPDGGE 77

Query: 290 T----EPETVPVEKLPLESKKQLLLEAXXXXXXXXXXXXXXXXXXXXXXXXKIGRWPPSK 123
           T    E + VPVE LPLESK QL LE                         K GRWPPSK
Sbjct: 78  TASEGEEDVVPVENLPLESKLQLKLEQKLRMKIAKKIRLRRKRLVRKRRMRKKGRWPPSK 137

Query: 122 MKKNKNV 102
           MKKNKNV
Sbjct: 138 MKKNKNV 144


>emb|CBI32867.3| unnamed protein product [Vitis vinifera]
          Length = 124

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 52/126 (41%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
 Frame = -1

Query: 455 MSVTATPMSILQRKAINLKPKSSYNNVLRVC--THLERGALVVRAASLDIDG--SDAGTT 288
           M++TATP+S    K  +   KS +N V      T  +R  ++V+A+S D+DG   D G T
Sbjct: 1   MAITATPVSRFLVKPNDTHLKS-FNGVRLHAPFTVKQRDGVIVKASS-DVDGVAPDGGET 58

Query: 287 ----EPETVPVEKLPLESKKQLLLEAXXXXXXXXXXXXXXXXXXXXXXXXKIGRWPPSKM 120
               E + VPVE LPLESK QL LE                         K GRWPPSKM
Sbjct: 59  ASEGEEDVVPVENLPLESKLQLKLEQKLRMKIAKKIRLRRKRLVRKRRMRKKGRWPPSKM 118

Query: 119 KKNKNV 102
           KKNKNV
Sbjct: 119 KKNKNV 124


>ref|XP_002878118.1| hypothetical protein ARALYDRAFT_486132 [Arabidopsis lyrata subsp.
           lyrata] gi|297323956|gb|EFH54377.1| hypothetical protein
           ARALYDRAFT_486132 [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 48/128 (37%), Positives = 65/128 (50%), Gaps = 8/128 (6%)
 Frame = -1

Query: 461 LSMSVTATPMSILQRKAINLKPKSSYNNVLRVCTHLERGALVVRAASLDIDGSDAGTTE- 285
           L  S  A+P+  L+  A+  K + S +      +H    A+VV+AA+  +DG++  + E 
Sbjct: 21  LQPSSFASPVWSLKPNAVESKNRVSLSAYSLNSSHGRAVAIVVKAAASGVDGAEPESNEE 80

Query: 284 PETV----PVEKLPLESKK---QLLLEAXXXXXXXXXXXXXXXXXXXXXXXXKIGRWPPS 126
           P TV    PV+KLPLESK+   +LLLE                         K GRWPPS
Sbjct: 81  PNTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRLRRKRLVRKRRMRKKGRWPPS 140

Query: 125 KMKKNKNV 102
           KMKKNKNV
Sbjct: 141 KMKKNKNV 148


>ref|NP_191250.1| plastid-specific 50S ribosomal protein 5 [Arabidopsis thaliana]
           gi|75173974|sp|Q9LER7.1|PSRP5_ARATH RecName: Full=50S
           ribosomal protein 5, chloroplastic; AltName:
           Full=Plastid-specific 50S ribosomal protein 5;
           Short=PSRP-5; Flags: Precursor
           gi|9663010|emb|CAC00754.1| ribosomal protein,
           chloroplast [Arabidopsis thaliana]
           gi|48310581|gb|AAT41842.1| At3g56910 [Arabidopsis
           thaliana] gi|332646064|gb|AEE79585.1| plastid-specific
           50S ribosomal protein 5 [Arabidopsis thaliana]
          Length = 148

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 55/147 (37%), Positives = 74/147 (50%), Gaps = 17/147 (11%)
 Frame = -1

Query: 491 ALLQIFSAPPLSMSVTATPMSILQRKA-----INLKPKS--SYNNVLRVCTHLE--RGAL 339
           ALL   S P LS   +++   +LQ  +     ++LKP +  S N V      L    G +
Sbjct: 2   ALLCFNSLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESKNRVSLSAYSLNSSHGRI 61

Query: 338 VVRAASLDIDGSDAGTTE-PETV----PVEKLPLESKK---QLLLEAXXXXXXXXXXXXX 183
           VV+AA+  +DG++  + E P+TV    PV+KLPLESK+   +LLLE              
Sbjct: 62  VVKAAASGVDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRLR 121

Query: 182 XXXXXXXXXXXKIGRWPPSKMKKNKNV 102
                      K GRWPPSKMKKNKNV
Sbjct: 122 RKRLVRKRKMRKKGRWPPSKMKKNKNV 148


>ref|XP_004144312.1| PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Cucumis
           sativus]
          Length = 153

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 53/131 (40%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
 Frame = -1

Query: 467 PPLSMSVTATPMSILQRKAINLKPKSSYNNVLRVCTHLERGA-LVVRAASL-----DIDG 306
           PP S    A P S+L  K I  +PK      LR  + +E  A LVV+AAS      + D 
Sbjct: 27  PPTS----AIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDS 82

Query: 305 SD---AGTTEPETVPVEKLPLESKKQLLLEAXXXXXXXXXXXXXXXXXXXXXXXXKIGRW 135
           SD   A   + E VPV+KLPLESK Q  LE                         K GRW
Sbjct: 83  SDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRW 142

Query: 134 PPSKMKKNKNV 102
           PPSKMKK KNV
Sbjct: 143 PPSKMKKLKNV 153