BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004001
         (1707 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271291.1| PREDICTED: splicing factor 3B subunit 4 [Vit...   517   e-144
ref|XP_002516394.1| spliceosome associated protein, putative [Ri...   512   e-142
ref|XP_004147654.1| PREDICTED: splicing factor 3B subunit 4-like...   503   e-140
gb|AEI98619.1| hypothetical protein 111O18.6 [Coffea canephora]       499   e-139
ref|XP_003600696.1| Splicing factor 3B subunit [Medicago truncat...   492   e-136

>ref|XP_002271291.1| PREDICTED: splicing factor 3B subunit 4 [Vitis vinifera]
          Length = 373

 Score =  517 bits (1331), Expect = e-144
 Identities = 255/289 (88%), Positives = 267/289 (92%), Gaps = 1/289 (0%)
 Frame = +1

Query: 85  MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 264
           MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQV+EELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDR 60

Query: 265 VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLD 444
           VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLD
Sbjct: 61  VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLD 120

Query: 445 PDVDEKLLYDTFNAFGVIVTNPKIMRDPESGNSRGFGFISYDSFETSDAAIEAMNGQYLC 624
           PDVDEKLLYDTF+AFGVIVTNPKIMRDP++GNSRGFGF+SYDSFE SDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLC 180

Query: 625 NRQITVSYAYKKDTKGERHGTPAERVLAASNP-VQKNRPHTLFASGPPTLAPGPQSNGTI 801
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP   K+RPHTLFASGPPTL   PQ+NG +
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPSAPKSRPHTLFASGPPTLPNVPQANGNM 240

Query: 802 GAPIPPRPFSTSSIPLGQIPPPRLPVPQSGAFPPPMQMGGPPSWPGHPQ 948
           GAP+PPRPF+   +P   IP  R P PQSGAF PPMQ+ GPPSW G PQ
Sbjct: 241 GAPMPPRPFANGVVPPVPIPAMRPPPPQSGAF-PPMQLAGPPSWQGQPQ 288


>ref|XP_002516394.1| spliceosome associated protein, putative [Ricinus communis]
           gi|223544492|gb|EEF46011.1| spliceosome associated
           protein, putative [Ricinus communis]
          Length = 376

 Score =  512 bits (1319), Expect = e-142
 Identities = 252/300 (84%), Positives = 272/300 (90%), Gaps = 3/300 (1%)
 Frame = +1

Query: 85  MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 264
           MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 265 VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLD 444
           VTNLHQGYGFVEFRSEEDADYAIK++NMIKL+GKPIRVNKASQDKKSLDVGANLF+GNLD
Sbjct: 61  VTNLHQGYGFVEFRSEEDADYAIKIMNMIKLFGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 445 PDVDEKLLYDTFNAFGVIVTNPKIMRDPESGNSRGFGFISYDSFETSDAAIEAMNGQYLC 624
           PDVDEKLL+DTF+AFGVIVTNPKIMRDPE+GNSRGFGFISYDSF+ SDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFDASDAAIEAMNGQYLC 180

Query: 625 NRQITVSYAYKKDTKGERHGTPAERVLAASNP-VQKNRPHTLFASGPPTLAPGPQSNGTI 801
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP  QK+RPHTLFASGPPTL   PQ+NGT+
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPSSQKSRPHTLFASGPPTLPSIPQANGTV 240

Query: 802 GAPIPPRPFSTSSIPLGQIPPPRLPVPQSGAFPPPMQMGGPPSWPGHP--QGQMNAPHGM 975
           GAP+PPRPF+  ++P G +PP R   P + AF PPMQ+ G P+W G P   GQ+  P  M
Sbjct: 241 GAPVPPRPFANGAVPPGPVPPLRPSAPPTAAF-PPMQVAGQPAWQGQPPQPGQVMPPQVM 299


>ref|XP_004147654.1| PREDICTED: splicing factor 3B subunit 4-like [Cucumis sativus]
           gi|449498825|ref|XP_004160645.1| PREDICTED: splicing
           factor 3B subunit 4-like [Cucumis sativus]
          Length = 379

 Score =  503 bits (1294), Expect = e-140
 Identities = 250/293 (85%), Positives = 262/293 (89%), Gaps = 2/293 (0%)
 Frame = +1

Query: 85  MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 264
           MTT+IAPGVGANLLGQH+ ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 265 VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLD 444
           VTNLHQGYGF+EFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLF+GNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 445 PDVDEKLLYDTFNAFGVIVTNPKIMRDPESGNSRGFGFISYDSFETSDAAIEAMNGQYLC 624
           PDVDEKLLYDTF+AFGVIVTNPKIMRDP++GNSRGFGFISYDSFE SDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 625 NRQITVSYAYKKDTKGERHGTPAERVLAASNPVQKNRPHTLFASGPPTLAPGPQSNGTIG 804
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP QK+RPHTLFASGPPTL    Q NG IG
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNP-QKSRPHTLFASGPPTLPKVAQPNGAIG 239

Query: 805 APIPPRPFSTSSIPLGQIPPPRLPVPQSGAFPPPMQMGGPPSWPGHPQ--GQM 957
           AP+PPRPF+  +I    IP  R   PQ  AFPP    G PP+W G PQ  GQM
Sbjct: 240 APVPPRPFANGAITPNPIPAIRPSPPQGVAFPPMPMAGQPPAWQGQPQQPGQM 292


>gb|AEI98619.1| hypothetical protein 111O18.6 [Coffea canephora]
          Length = 368

 Score =  499 bits (1285), Expect = e-139
 Identities = 250/296 (84%), Positives = 264/296 (89%), Gaps = 2/296 (0%)
 Frame = +1

Query: 85  MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 264
           MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 265 VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLD 444
           VTN HQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS+DVGANLF+GNLD
Sbjct: 61  VTNSHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSVDVGANLFIGNLD 120

Query: 445 PDVDEKLLYDTFNAFGVIVTNPKIMRDPESGNSRGFGFISYDSFETSDAAIEAMNGQYLC 624
           PDVDEKLLYDTF+AFGVIVTNPKIMRDPE+GNSRGFGFISYDSFE SDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 625 NRQITVSYAYKKDTKGERHGTPAERVLAASNP-VQKNRPHTLFASGPPTLAPGPQSNGTI 801
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP VQK+RPHT+FASGPPTL    Q++  I
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPNVQKSRPHTMFASGPPTLQNVAQASANI 240

Query: 802 GAPIPPRPFSTSSIPLGQIPPPRLPVPQSGAFPPPMQMGGPPSWPG-HPQGQMNAP 966
            AP+PPRPF+  ++P   IPP R P PQ+  F PPM +  P SW G  P GQ   P
Sbjct: 241 AAPVPPRPFANGNVPPTSIPPFRPPPPQASMF-PPMPLPPPQSWQGQQPPGQTALP 295


>ref|XP_003600696.1| Splicing factor 3B subunit [Medicago truncatula]
           gi|355489744|gb|AES70947.1| Splicing factor 3B subunit
           [Medicago truncatula]
          Length = 379

 Score =  492 bits (1266), Expect = e-136
 Identities = 251/318 (78%), Positives = 265/318 (83%), Gaps = 19/318 (5%)
 Frame = +1

Query: 85  MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 264
           MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQ+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60

Query: 265 VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLD 444
           VTN HQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLF+GNLD
Sbjct: 61  VTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 445 PDVDEKLLYDTFNAFGVIVTNPKIMRDPESGNSRGFGFISYDSFETSDAAIEAMNGQYLC 624
           PDVDEKLLYDTF+AFGVIVTNPKIMRDP++GNSRGFGFISYDSFE SD+AIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLC 180

Query: 625 NRQITVSYAYKKDTKGERHGTPAERVLAASNP-VQKNRPHTLFASGPPTLAPGPQSNGTI 801
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP  QK+RPHTLFASGPP+L   PQ+NGTI
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTI 240

Query: 802 GAPIPPRPFSTSSIP----LGQIPPPRLPVPQSGAFPPP--------------MQMGGPP 927
            AP+PPRPF+    P    + Q PPP+ P  Q    PPP              MQ G PP
Sbjct: 241 PAPVPPRPFANGVAPPPIHVIQPPPPQAPAFQPMQMPPPGQQVWHQQQQGQPMMQQGMPP 300

Query: 928 SWPGHPQGQMNAPHGMAL 981
                P  Q   PH M +
Sbjct: 301 -----PMQQFRPPHSMQM 313