BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003945
         (1553 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274016.1| PREDICTED: mitochondrial ubiquitin ligase ac...   390   e-106
ref|XP_003627295.1| Baculoviral IAP repeat-containing protein [M...   368   2e-99
ref|XP_003547746.1| PREDICTED: mitochondrial ubiquitin ligase ac...   368   3e-99
ref|XP_003520919.1| PREDICTED: mitochondrial ubiquitin ligase ac...   367   6e-99
ref|XP_003552078.1| PREDICTED: mitochondrial ubiquitin ligase ac...   363   9e-98

>ref|XP_002274016.1| PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1 [Vitis
            vinifera] gi|297743001|emb|CBI35868.3| unnamed protein
            product [Vitis vinifera]
          Length = 391

 Score =  390 bits (1002), Expect = e-106
 Identities = 206/398 (51%), Positives = 269/398 (67%), Gaps = 12/398 (3%)
 Frame = -3

Query: 1428 MSLSD-TALSVLARLGLSNDXXXXXXXXXXXAVQAYYNYVSSSTALHKITHAKSVPISDL 1252
            MS  D  A ++LA++ L+ D           AV+++    S+S+AL +I  + S  +SDL
Sbjct: 1    MSAHDQAAAAILAQVALAADGAILGLALAYVAVRSFIRLSSTSSALRQIDQSPSFRVSDL 60

Query: 1251 RSLLDNTSEN-----------LVVVRGFVQAKSFLNGSWQTLRPNVISHDASGETGVALQ 1105
            RSLL  +S++           LVVVRG V+AKS ++G+W++LRPNV+    SGE GV LQ
Sbjct: 61   RSLLSPSSDDESDQSTSSDGLLVVVRGTVEAKSAIDGNWKSLRPNVLVSHESGEKGVILQ 120

Query: 1104 RTLSYVYDDWSILAGITSDFKRLPFIGRRKSLRTPKQTSLRSVPFVLVGTSLWPHPEYVS 925
            RT + +Y++W    G TSD + L      +S +  + TSLR+VPF+LV    WP  +YV 
Sbjct: 121  RTQTCIYNEWRGFFGWTSDIRTL----FARSWKEKESTSLRTVPFILVEGGRWPQSDYVI 176

Query: 924  VNLEGSDQPLPLTTVYSHLEPVSVTPLTFLQAIFGHPYPVGVLDEEKILPLGKEITAIGV 745
            VN++GS  PLPLTTVY  L+PV+ +P TFLQA+FGH YPVG+LDEEK+LPLGKEITA+G+
Sbjct: 177  VNMDGSRHPLPLTTVYHQLQPVNASPYTFLQALFGHDYPVGLLDEEKLLPLGKEITAVGI 236

Query: 744  CSLQEGNPQIKAFKDLPYFLTEKSKDDMVQHLTFKSSILFWCTIIFGSASLAILGYSSFK 565
            CSL+ G P+IK+ KDLPYFL+E SKD MV  L FKS +LFW  +I GS S+ +LGY+  +
Sbjct: 237  CSLKNGIPEIKSCKDLPYFLSEMSKDQMVVDLVFKSKVLFWSGVILGSVSIGVLGYAVVR 296

Query: 564  NXXXXXXXXXXXQDLQARSVEIDETDDSTQVQDDDGTEDIPDGQLCVICLMRRRRSAFVP 385
            N                     D+TD  TQ+ +DD   D+PDG+LCVICLMRR+RSAFVP
Sbjct: 297  NWNRWKEWRQQRGVRPPSQAVTDDTD--TQIAEDD-AGDVPDGELCVICLMRRKRSAFVP 353

Query: 384  CGHLACCQRCALSVERDSSPKCPLCRQAIRTSVRIYNS 271
            CGHL CCQRCALSVER+ SPKCP+CRQ IR+SVRIY S
Sbjct: 354  CGHLVCCQRCALSVERELSPKCPVCRQIIRSSVRIYGS 391


>ref|XP_003627295.1| Baculoviral IAP repeat-containing protein [Medicago truncatula]
            gi|66947626|emb|CAJ00009.1| C3HC4 zinc finger containing
            protein [Medicago truncatula] gi|355521317|gb|AET01771.1|
            Baculoviral IAP repeat-containing protein [Medicago
            truncatula]
          Length = 383

 Score =  368 bits (945), Expect = 2e-99
 Identities = 197/392 (50%), Positives = 260/392 (66%), Gaps = 6/392 (1%)
 Frame = -3

Query: 1428 MSLSDTAL-SVLARLGLSNDXXXXXXXXXXXAVQAYYNYVSSSTALHKITHAKSVPISDL 1252
            MS  + AL S+L++L LS D           AV++   +  +S AL KIT A SV +SDL
Sbjct: 1    MSSQEQALVSLLSQLALSFDGAVLGFAVAYVAVRSIRKFTLTSAALRKITAAPSVSVSDL 60

Query: 1251 RSLLDNTSEN-----LVVVRGFVQAKSFLNGSWQTLRPNVISHDASGETGVALQRTLSYV 1087
            RSLL  T EN     +V+VRG V AK+ ++GSW+ L P V+    SG+ GV LQRT + +
Sbjct: 61   RSLLTETDENSDEGKIVIVRGTVDAKNVVDGSWKALWPGVLVSSESGDKGVVLQRTQTCI 120

Query: 1086 YDDWSILAGITSDFKRLPFIGRRKSLRTPKQTSLRSVPFVLVGTSLWPHPEYVSVNLEGS 907
            Y++W  L G TSD + L F+   +S R  + TSLR +PFVL+      +PEYV VN++GS
Sbjct: 121  YNEWKGLFGWTSDLRAL-FL---RSWRQQESTSLRKIPFVLIDVGRPSNPEYVVVNMDGS 176

Query: 906  DQPLPLTTVYSHLEPVSVTPLTFLQAIFGHPYPVGVLDEEKILPLGKEITAIGVCSLQEG 727
              PLPLTTVY  L+PV+  P TFLQA+FGH YPVG+LDEEKILPLGK+++A+G+CSL+ G
Sbjct: 177  SHPLPLTTVYHRLQPVNPPPYTFLQALFGHEYPVGLLDEEKILPLGKDVSAVGLCSLRNG 236

Query: 726  NPQIKAFKDLPYFLTEKSKDDMVQHLTFKSSILFWCTIIFGSASLAILGYSSFKNXXXXX 547
              +IKA  DLPY+L++ SKD M+  L+FK+ +LFW  I+ GS S+ I+GY+  +N     
Sbjct: 237  IAEIKACNDLPYYLSDLSKDQMIVDLSFKTKLLFWSGILLGSMSVGIIGYAVVRNWNKWK 296

Query: 546  XXXXXXQDLQARSVEIDETDDSTQVQDDDGTEDIPDGQLCVICLMRRRRSAFVPCGHLAC 367
                  Q  Q R   I+    +     DD  ED+PDGQLCVICLMRRRRS F+PCGHL C
Sbjct: 297  QWKQQRQLQQRRQQPIEPVPPT-----DDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVC 351

Query: 366  CQRCALSVERDSSPKCPLCRQAIRTSVRIYNS 271
            CQ CA+SVE + +PKCP+CRQ +R SVRI+ S
Sbjct: 352  CQGCAISVESEVAPKCPVCRQEVRDSVRIFES 383


>ref|XP_003547746.1| PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1-like
            [Glycine max]
          Length = 383

 Score =  368 bits (944), Expect = 3e-99
 Identities = 192/384 (50%), Positives = 253/384 (65%), Gaps = 5/384 (1%)
 Frame = -3

Query: 1407 LSVLARLGLSNDXXXXXXXXXXXAVQAYYNYVSSSTALHKITHAKSVPISDLRSLL---- 1240
            LS+L++L LS D           AV+  + + ++S +L K+  A S+ +SDLRSLL    
Sbjct: 9    LSLLSKLALSFDGAVLGVALAFAAVRTLFKFTATSASLRKLRRAPSISVSDLRSLLAEPP 68

Query: 1239 -DNTSENLVVVRGFVQAKSFLNGSWQTLRPNVISHDASGETGVALQRTLSYVYDDWSILA 1063
             D  +  +V++RG V AKS ++G+W+TL+P V+    SG+ GV LQRT + +Y+DW  L 
Sbjct: 69   SDADAGEIVIIRGTVDAKSAVDGTWKTLKPGVLVSRESGDKGVILQRTQTCIYNDWKGLL 128

Query: 1062 GITSDFKRLPFIGRRKSLRTPKQTSLRSVPFVLVGTSLWPHPEYVSVNLEGSDQPLPLTT 883
            G TSD + +      +SLR    TS R VPFVL+     P+ EYV VN++GS  PLPLTT
Sbjct: 129  GWTSDLRAIC----ARSLRQQDSTSFRKVPFVLIDVGRRPNAEYVVVNMDGSRHPLPLTT 184

Query: 882  VYSHLEPVSVTPLTFLQAIFGHPYPVGVLDEEKILPLGKEITAIGVCSLQEGNPQIKAFK 703
            VY  L+P++ +P TFLQA+FGH YPVG+LDEEKILPLGK+ITA+G CSL+ G  +IK+ K
Sbjct: 185  VYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDITAVGHCSLKNGIAEIKSCK 244

Query: 702  DLPYFLTEKSKDDMVQHLTFKSSILFWCTIIFGSASLAILGYSSFKNXXXXXXXXXXXQD 523
            D+PYFL++ SKD M+  L+ K+ ILFW  I  GS S+ +LGY+  +N           Q 
Sbjct: 245  DIPYFLSDLSKDQMIVDLSIKAKILFWGGISLGSMSVGVLGYAVLRNWIKWKRWKVQRQL 304

Query: 522  LQARSVEIDETDDSTQVQDDDGTEDIPDGQLCVICLMRRRRSAFVPCGHLACCQRCALSV 343
             Q R    D      + Q DD  ED+PDGQLCVICLMRRRRS F+PCGHL CCQ CA+SV
Sbjct: 305  QQQRQAVSD-----AEPQVDDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISV 359

Query: 342  ERDSSPKCPLCRQAIRTSVRIYNS 271
            ER+ +PKCP+CRQ IR SVR Y S
Sbjct: 360  EREVAPKCPVCRQEIRDSVRTYES 383


>ref|XP_003520919.1| PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-like
            [Glycine max]
          Length = 388

 Score =  367 bits (941), Expect = 6e-99
 Identities = 197/389 (50%), Positives = 256/389 (65%), Gaps = 10/389 (2%)
 Frame = -3

Query: 1407 LSVLARLGLSNDXXXXXXXXXXXAVQAYYNYVSSSTALHKITHAKSVPISDLRSLL---- 1240
            +S+L++L LS D           AV+  + + ++S AL K+  A SV +SDLRSLL    
Sbjct: 9    VSLLSQLALSFDGAVLGLALAYAAVRTLFKFTATSAALRKLHRAPSVSVSDLRSLLAEIP 68

Query: 1239 ---DNTSE--NLVVVRGFVQAKSFLNG-SWQTLRPNVISHDASGETGVALQRTLSYVYDD 1078
               D  S+  N+V+VRG V AKS + G +W+TLRP V+    SG+  V LQRT + +Y++
Sbjct: 69   SDADGNSDGGNIVIVRGTVDAKSTVEGGTWKTLRPGVLVSRESGDKSVILQRTQTCIYNE 128

Query: 1077 WSILAGITSDFKRLPFIGRRKSLRTPKQTSLRSVPFVLVGTSLWPHPEYVSVNLEGSDQP 898
            W  L G TSD + +      +S R  + TSLR VPFVL+    WP+ EYV VN++GS  P
Sbjct: 129  WKGLFGWTSDLRAI----FARSWRQQESTSLRKVPFVLIDVGRWPNAEYVVVNMDGSRHP 184

Query: 897  LPLTTVYSHLEPVSVTPLTFLQAIFGHPYPVGVLDEEKILPLGKEITAIGVCSLQEGNPQ 718
            LPL+TVY  L+P++ +P TFLQA+FGH YPVG+LDEEKILPLGK ITA+G+CSL+ G  +
Sbjct: 185  LPLSTVYHKLQPITASPYTFLQALFGHEYPVGLLDEEKILPLGKNITAVGLCSLKNGIAE 244

Query: 717  IKAFKDLPYFLTEKSKDDMVQHLTFKSSILFWCTIIFGSASLAILGYSSFKNXXXXXXXX 538
            IK+ KDLPYFL++ SKD M+  L+ K+ ILFW  I  GS S+ +LGY+  +N        
Sbjct: 245  IKSCKDLPYFLSDLSKDQMIVDLSSKTKILFWGGIALGSMSVGVLGYAVVRNWNKWKQWK 304

Query: 537  XXXQDLQARSVEIDETDDSTQVQDDDGTEDIPDGQLCVICLMRRRRSAFVPCGHLACCQR 358
               Q  Q R    D      + Q DD  ED+PDGQLCVICLMRRRRS F+PCGHL CCQ 
Sbjct: 305  QQRQLQQQRQAVSD-----VEPQMDDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQG 359

Query: 357  CALSVERDSSPKCPLCRQAIRTSVRIYNS 271
            CA+SVER+ +PKCP+CRQ IR SVRIY S
Sbjct: 360  CAISVEREVAPKCPVCRQEIRDSVRIYES 388


>ref|XP_003552078.1| PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-like
            [Glycine max]
          Length = 387

 Score =  363 bits (931), Expect = 9e-98
 Identities = 198/396 (50%), Positives = 259/396 (65%), Gaps = 10/396 (2%)
 Frame = -3

Query: 1428 MSLSDTAL-SVLARLGLSNDXXXXXXXXXXXAVQAYYNYVSSSTALHKITHAKSVPISDL 1252
            MS  + AL S+L++L LS D           AV+  + + ++S+AL K+  A S+ +SDL
Sbjct: 1    MSHQEQALVSLLSQLALSLDGAVLGFALAYAAVRTLFKFTATSSALRKLRRAPSLSVSDL 60

Query: 1251 RSLL-------DNTSEN--LVVVRGFVQAKSFLNGSWQTLRPNVISHDASGETGVALQRT 1099
            RSLL       D  S+   +V+VRG V AKS ++G+W+TLRP V+    SG+ GV LQRT
Sbjct: 61   RSLLAEIPSDGDGNSKGGIIVIVRGTVDAKSAVDGTWKTLRPGVLVSRESGDKGVILQRT 120

Query: 1098 LSYVYDDWSILAGITSDFKRLPFIGRRKSLRTPKQTSLRSVPFVLVGTSLWPHPEYVSVN 919
             + +Y++W  L G TSD + +      +S R  + TSLR VPF+L      P+ EYV VN
Sbjct: 121  QTCIYNEWKGLFGWTSDLRAI----FARSWRQQESTSLRKVPFLLTDVGRRPNAEYVVVN 176

Query: 918  LEGSDQPLPLTTVYSHLEPVSVTPLTFLQAIFGHPYPVGVLDEEKILPLGKEITAIGVCS 739
            ++GS  PLPLTTVY  L+P++ +P TFLQA+FGH YPVG+LDEEKILPLGK+ITA+G+CS
Sbjct: 177  MDGSRHPLPLTTVYHKLQPITASPYTFLQALFGHEYPVGLLDEEKILPLGKDITAVGLCS 236

Query: 738  LQEGNPQIKAFKDLPYFLTEKSKDDMVQHLTFKSSILFWCTIIFGSASLAILGYSSFKNX 559
            L+ G  +IK+ K LPYFL++ SKD M+  L+ K+ ILFW  I  GS S+ +LGY+  +N 
Sbjct: 237  LKNGIAEIKSCKYLPYFLSDLSKDQMIMDLSIKTKILFWGGIALGSMSVGVLGYAVVRNW 296

Query: 558  XXXXXXXXXXQDLQARSVEIDETDDSTQVQDDDGTEDIPDGQLCVICLMRRRRSAFVPCG 379
                      Q  Q R    D      + Q DD  ED PDGQLCVICLMRRRRS F+PCG
Sbjct: 297  NKWKQWKQQRQLQQQRQAVSD-----VEPQMDDEIEDAPDGQLCVICLMRRRRSVFIPCG 351

Query: 378  HLACCQRCALSVERDSSPKCPLCRQAIRTSVRIYNS 271
            HL CCQ CA+SVER+ +PKCP+CRQ IR SVRIY S
Sbjct: 352  HLVCCQGCAISVEREVAPKCPVCRQEIRDSVRIYES 387