BLASTX nr result
ID: Coptis24_contig00003852
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00003852
(2053 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263397.2| PREDICTED: transcription factor PIF1-like [V... 317 1e-85
emb|CBI37249.3| unnamed protein product [Vitis vinifera] 313 2e-84
ref|XP_002303090.1| predicted protein [Populus trichocarpa] gi|2... 291 1e-77
ref|XP_002521150.1| Phytochrome-interacting factor, putative [Ri... 294 5e-77
ref|XP_003536955.1| PREDICTED: transcription factor PIF1-like [G... 286 1e-74
>ref|XP_002263397.2| PREDICTED: transcription factor PIF1-like [Vitis vinifera]
Length = 517
Score = 317 bits (811), Expect(2) = 1e-85
Identities = 222/500 (44%), Positives = 266/500 (53%), Gaps = 50/500 (10%)
Frame = -2
Query: 1722 DDELMELLWQNGQVVLHSQTQR--KKXXXXXXXXXXXNAPPYQ---------------LF 1594
DDE+MELLWQNGQVV+ Q QR KK PP Q LF
Sbjct: 30 DDEIMELLWQNGQVVMQIQNQRSFKKSQPSKFPIQDAVLPPEQSKIRSSAPVDESSAQLF 89
Query: 1593 MQEDEMASWLHYPLDDDNNDFCSDLLYXXXXXXXXXXXXXXXXXXXXPLIPNTPNTS--- 1423
MQEDEMASWLHYPLDD FC+DLL P +
Sbjct: 90 MQEDEMASWLHYPLDD----FCADLLDPTPCVNASPPPARPNLSPDVRQPEERPAATKPP 145
Query: 1422 ---------NNKFHHFMRFSRPNWRAGSE---SQPSG-GSGVVESNEI-------EISTV 1303
++K H+F+ F R + E S+P+G S VV+S++ S
Sbjct: 146 IPPARRVELDSKVHNFLHFPRKSTAESGEPSSSRPAGMESTVVDSSDTPGVCQQSRTSPA 205
Query: 1302 GLDRRVMNNGVDENLGGSGSMNQDTATEQDR-EVTMTXXXXXXXXXAEPLLADKP-PSGS 1129
+ + N +GG+ A E E+TMT +P P
Sbjct: 206 EWCKAELANSGYGTIGGATEAATSAAGEHTTFELTMTSSPEGSGSGGSASAGAEPTPKAP 265
Query: 1128 NNDRKRKGREENE--EHDDEDAKFEATDTKKQVRGXXXXXXXXXAEVHNLSERRRRDRIN 955
+DRKRKGRE ++ E+ ED +FE+ D KKQVRG AEVHNLSERRRRDRIN
Sbjct: 266 ADDRKRKGREGDDTAEYQSEDVEFESADAKKQVRGSATAKRSRAAEVHNLSERRRRDRIN 325
Query: 954 EKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPMVFPGVQQYMSPX 775
EKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPM++PGVQQYM
Sbjct: 326 EKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPMMYPGVQQYM--- 382
Query: 774 XXXXXXXXXXXXXXXXXXXXGLSRPMMPFPQVLAGSSMPRPAAAAYLGPRLPIPAYHPPT 595
G++RPMMPFP VL GS++P AAAA+LG R P+PA+H P
Sbjct: 383 -----PQMGMGMGMGMGMEMGMNRPMMPFPSVLGGSTLPTTAAAAHLGQRYPMPAFHMPH 437
Query: 594 GSSPGVSTIRP-NLSHPSFNSLGMQSSTNQLQPHNFTDSYQHYLSLYNMQAPQCPPQTHS 418
++P S I+ N S P NSLG QSS NQ + NF D Y YL MQ P P Q +
Sbjct: 438 MAAPDSSRIQANNQSDPVLNSLGTQSS-NQPRVPNFADPYLQYLQ--QMQMP--PAQNQA 492
Query: 417 MPQ-----PSSSEGLQSLEN 373
M Q PS+S+G ++LEN
Sbjct: 493 MGQQNTSKPSTSKGTENLEN 512
Score = 28.5 bits (62), Expect(2) = 1e-85
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -1
Query: 1846 MNHFVPDFEMDEDD 1805
MNH VPDFE+D++D
Sbjct: 1 MNHCVPDFEVDDED 14
>emb|CBI37249.3| unnamed protein product [Vitis vinifera]
Length = 479
Score = 313 bits (801), Expect(2) = 2e-84
Identities = 216/487 (44%), Positives = 256/487 (52%), Gaps = 37/487 (7%)
Frame = -2
Query: 1722 DDELMELLWQNGQVVLHSQTQR--KKXXXXXXXXXXXNAPPYQ---------------LF 1594
DDE+MELLWQNGQVV+ Q QR KK PP Q LF
Sbjct: 30 DDEIMELLWQNGQVVMQIQNQRSFKKSQPSKFPIQDAVLPPEQSKIRSSAPVDESSAQLF 89
Query: 1593 MQEDEMASWLHYPLDDDNNDFCSDLLYXXXXXXXXXXXXXXXXXXXXPLIPNTPNTS--- 1423
MQEDEMASWLHYPLDD FC+DLL P +
Sbjct: 90 MQEDEMASWLHYPLDD----FCADLLDPTPCVNASPPPARPNLSPDVRQPEERPAATKPP 145
Query: 1422 ---------NNKFHHFMRFSRPNWRAGSESQPSGGSGVVESNEIEISTVGLDRRVMNNGV 1270
++K H+F+ F R + E S +G+ ES S G + +
Sbjct: 146 IPPARRVELDSKVHNFLHFPRKSTAESGEPSSSRPAGM-ESTVAATSAAG-EHTTFELTM 203
Query: 1269 DENLGGSGSMNQDTATEQDREVTMTXXXXXXXXXAEPLLADKPPSGSNNDRKRKGREENE 1090
+ GSGS +A A+ P +DRKRKGRE ++
Sbjct: 204 TSSPEGSGSGGSASAG-----------------------AEPTPKAPADDRKRKGREGDD 240
Query: 1089 --EHDDEDAKFEATDTKKQVRGXXXXXXXXXAEVHNLSERRRRDRINEKMKALQELIPRC 916
E+ ED +FE+ D KKQVRG AEVHNLSERRRRDRINEKMKALQELIPRC
Sbjct: 241 TAEYQSEDVEFESADAKKQVRGSATAKRSRAAEVHNLSERRRRDRINEKMKALQELIPRC 300
Query: 915 NKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPMVFPGVQQYMSPXXXXXXXXXXXXXX 736
NKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPM++PGVQQYM
Sbjct: 301 NKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPMMYPGVQQYM--------PQMGMGMG 352
Query: 735 XXXXXXXGLSRPMMPFPQVLAGSSMPRPAAAAYLGPRLPIPAYHPPTGSSPGVSTIRP-N 559
G++RPMMPFP VL GS++P AAAA+LG R P+PA+H P ++P S I+ N
Sbjct: 353 MGMGMEMGMNRPMMPFPSVLGGSTLPTTAAAAHLGQRYPMPAFHMPHMAAPDSSRIQANN 412
Query: 558 LSHPSFNSLGMQSSTNQLQPHNFTDSYQHYLSLYNMQAPQCPPQTHSMPQ-----PSSSE 394
S P NSLG QSS NQ + NF D Y YL MQ P P Q +M Q PS+S+
Sbjct: 413 QSDPVLNSLGTQSS-NQPRVPNFADPYLQYLQ--QMQMP--PAQNQAMGQQNTSKPSTSK 467
Query: 393 GLQSLEN 373
G ++LEN
Sbjct: 468 GTENLEN 474
Score = 28.5 bits (62), Expect(2) = 2e-84
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -1
Query: 1846 MNHFVPDFEMDEDD 1805
MNH VPDFE+D++D
Sbjct: 1 MNHCVPDFEVDDED 14
>ref|XP_002303090.1| predicted protein [Populus trichocarpa] gi|222844816|gb|EEE82363.1|
predicted protein [Populus trichocarpa]
Length = 615
Score = 291 bits (745), Expect(2) = 1e-77
Identities = 212/545 (38%), Positives = 251/545 (46%), Gaps = 102/545 (18%)
Frame = -2
Query: 1722 DDELMELLWQNGQVVLHSQTQRKKXXXXXXXXXXXNAPPYQL------------------ 1597
++E+MELLWQNGQVV+HSQ +KK P QL
Sbjct: 33 EEEIMELLWQNGQVVMHSQRSQKKSSPPPSELDDAVLPADQLPGTKEIRSSHDQQQEHHH 92
Query: 1596 -FMQEDEMASWLHYPLDDDN--NDFCSDLLYXXXXXXXXXXXXXXXXXXXXPLI------ 1444
FMQEDEMASWL++PL+D N +DFC+DLLY +
Sbjct: 93 LFMQEDEMASWLNHPLNDTNFDHDFCADLLYPPTASTASITREAAVTNAAASTVRGATQR 152
Query: 1443 --------------PNTPNTSNNKFHHFMRFSRPNWRAGSESQPSGGSGVVESNEI---- 1318
P P +F FSR SES S VV + +
Sbjct: 153 MEARSYPAVSAPRPPIPPVRRAEVVQNFAYFSRHRAGGVSESGRSNSKSVVRESTVVDSC 212
Query: 1317 EISTVGLDRRVMNNGVDENLG------------GSGSMNQDTATEQDREVTMTXXXXXXX 1174
E T + D G + S N++T T E+T T
Sbjct: 213 ETPTARISETAFARSADNTCGTINGAAVAGTVSSAPSSNRETMTNPC-EMTSTSSPGCSS 271
Query: 1173 XXAEPLLADKPPSGSNNDRKRKGREENEEHDDE--------------------------- 1075
AE P DRKRKGREE E E
Sbjct: 272 ASAELPALMSPVE----DRKRKGREEEAECHSEFIAISITMAHGNQPQSVAIRQKTQNSA 327
Query: 1074 -----------------DAKFEATDTKKQVRGXXXXXXXXXAEVHNLSERRRRDRINEKM 946
DA+FE+ D KK++RG AEVHNLSERRRRDRINEKM
Sbjct: 328 DSSKPLQGRRDAANPLKDAEFESADAKKRIRGSMSSKRSRAAEVHNLSERRRRDRINEKM 387
Query: 945 KALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPMVFPGVQQYMSPXXXX 766
+ALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPM+FPG QQYM P
Sbjct: 388 RALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPMMFPGFQQYMPP---- 443
Query: 765 XXXXXXXXXXXXXXXXXGLSRPMMPFPQVLAGSSMPRPAAAAYLGPRLPIPAYHPPTGSS 586
GLSRPMMPFP +LAG+ PAAAA+L PR P+P +H P +
Sbjct: 444 ------MGIGMGMGMEMGLSRPMMPFPNILAGAPSATPAAAAHLVPRFPVPPFHVPPIPA 497
Query: 585 PGVSTIRP-NLSHPSFNSLGMQSSTNQLQPHNFTDSYQHYLSLYNMQAPQCPPQTHSMPQ 409
P S ++P N P S G Q + NQ + NF D YQHYL LY M P P+ +M Q
Sbjct: 498 PDPSRVQPTNQVDPMLGSPG-QQNPNQPRVPNFVDPYQHYLGLYQMHLPGV-PRNQAMAQ 555
Query: 408 PSSSE 394
PS+S+
Sbjct: 556 PSTSK 560
Score = 27.7 bits (60), Expect(2) = 1e-77
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 1846 MNHFVPDFEMDEDDXXXXXXXXXXXTRPNKPS 1751
MN +VPDFEMD+D TRP KP+
Sbjct: 1 MNPYVPDFEMDDD--YSLPPPPSTHTRPRKPA 30
>ref|XP_002521150.1| Phytochrome-interacting factor, putative [Ricinus communis]
gi|223539719|gb|EEF41301.1| Phytochrome-interacting
factor, putative [Ricinus communis]
Length = 572
Score = 294 bits (753), Expect = 5e-77
Identities = 218/558 (39%), Positives = 271/558 (48%), Gaps = 108/558 (19%)
Frame = -2
Query: 1722 DDELMELLWQNGQVVLHSQTQRKKXXXXXXXXXXXNAPPYQ------------------- 1600
+DE MELLW NGQVV+ +Q+ KK P Q
Sbjct: 33 EDEFMELLWHNGQVVVQTQSL-KKPQQQHHKYDDAVIPVDQSNPRDVIRTAQEHHNHNNN 91
Query: 1599 ---------------LFMQEDEMASWLHYPLDDDN--NDFCSDLLYXXXXXXXXXXXXXX 1471
LFMQEDEMASWLHYP++D N DFC+DLLY
Sbjct: 92 SNNNNNNNNNTHNSNLFMQEDEMASWLHYPINDTNFDQDFCADLLYPTSAAAACVTSTTT 151
Query: 1470 XXXXXXPLIPNTPNTSNNKF--------------------------------------HH 1405
T T+NN F +
Sbjct: 152 NT--------TTTTTTNNSFAPVRSLHNPEIRSQQPPVSATATASRPPIPPTRRAQVVQN 203
Query: 1404 FMRFSRPNWRAGSESQPSGGSGVV----ESNEIEIST----VGLDRRVM----------- 1282
F FSR R G+ SG S V ES ++ S + LD R+
Sbjct: 204 FAYFSRHRARDGANVAESGPSKVKPVARESTVVDSSETPEGIALDSRISEAAFGRSTSGG 263
Query: 1281 -NNGVDENLGGSGSMNQDTATEQDREVT------MTXXXXXXXXXAEPLLADKPPSGSNN 1123
N GV G+ ++ +RE+T +T AEP +PP+ +
Sbjct: 264 DNGGVGGAAAACGASSRGNNNNNNREMTTTCEMTVTSSPGGSSASAEPPQPQRPPA---D 320
Query: 1122 DRKRKGREENEEH-DDEDAKFEATDTKKQVRGXXXXXXXXXAEVHNLSERRRRDRINEKM 946
DRKRKGREE E+ ED +FE+ D KKQ RG AEVHNLSERRRRDRINEKM
Sbjct: 321 DRKRKGREEETEYYHSEDVEFESADAKKQARGSTSTKRSRAAEVHNLSERRRRDRINEKM 380
Query: 945 KALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPMVFPGVQQYMSPXXXX 766
+ALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPM+FPG+QQYM P
Sbjct: 381 RALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPMMFPGIQQYMPP---- 436
Query: 765 XXXXXXXXXXXXXXXXXGLSRPMMPFPQVLAGSSMP-RPAAAAYLGPRLPIPAYHPPTGS 589
G+SRPMMPFP VL+G+ +P + AAAA+LGPR +PA+H P
Sbjct: 437 ----MGMGMGIGMGMEMGMSRPMMPFPNVLSGAPLPTQAAAAAHLGPRFHMPAFHMPPVP 492
Query: 588 SPGVSTIR-PNLSHPSFNSLGMQSSTNQLQPHNFTDSYQHYLSLYNMQAPQCPPQTHSMP 412
+P S I+ + S P +++ Q + NQ + NF D YQ YL L +Q P P+ +M
Sbjct: 493 APDPSRIQAASQSDPMVSAISTQ-NPNQPRLPNFVDPYQQYLGLQQLQIP--VPENQAMA 549
Query: 411 QPSSS-----EGLQSLEN 373
QPS+S +G ++L+N
Sbjct: 550 QPSTSKPGANQGAENLDN 567
>ref|XP_003536955.1| PREDICTED: transcription factor PIF1-like [Glycine max]
Length = 491
Score = 286 bits (733), Expect = 1e-74
Identities = 197/487 (40%), Positives = 252/487 (51%), Gaps = 38/487 (7%)
Frame = -2
Query: 1722 DDELMELLWQNGQVVLHSQTQRKKXXXXXXXXXXXNAPPYQ-------------LFMQED 1582
+DE+MELLWQNGQVV+ +Q QR P + LFMQED
Sbjct: 20 NDEIMELLWQNGQVVMQNQNQRPFRKQPPTTDGDGPIPAREIRSSEAENYNSQHLFMQED 79
Query: 1581 EMASWLHYPLDDD-----NNDFCSDLLYXXXXXXXXXXXXXXXXXXXXPLI--------- 1444
EMASWLHYP+ +D ++DFC+D+LY
Sbjct: 80 EMASWLHYPIHEDPPPFDHHDFCADILYPPPNATASQNQSSASVQSSVRTTELQHPAPRP 139
Query: 1443 ----PNTPNTSNNKFHHFMRFSRPNWRAGSESQPSGGSGVVESNEIEISTVGLDRRVMNN 1276
P + ++ H+F F++ G+ S S + + V R ++
Sbjct: 140 PIPPPRRQEHTLSRIHNFTHFAKH----GNASSSSKAAAPAQPTVATAEHVETGRASVSA 195
Query: 1275 GVDENLGGSGSMNQDTATEQDREVTMTXXXXXXXXXAEPLLADKPPSGSNNDRKRKGREE 1096
+ G ++TAT +VT+T AEP+ + + RKRKGRE+
Sbjct: 196 AAGKTPASDGG--RETAT---CDVTVTSSPGGSSGSAEPVQREPVVN-----RKRKGREQ 245
Query: 1095 NE-EHDDEDAKFEATDTKKQVRGXXXXXXXXXAEVHNLSERRRRDRINEKMKALQELIPR 919
E E+ ED FE+ + KKQVRG AEVHNLSERRRRDRINEKMKALQELIPR
Sbjct: 246 EESEYQSEDVDFESPEAKKQVRGSTSTKRSHAAEVHNLSERRRRDRINEKMKALQELIPR 305
Query: 918 CNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPMVFPGVQQYMSPXXXXXXXXXXXXX 739
CNKSDKASMLDEAIEYLKSLQLQVQMMSMGC MVPM+FPG+QQYM P
Sbjct: 306 CNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMIFPGIQQYMPP----MGMGIGMGM 361
Query: 738 XXXXXXXXGLSRPMMPFPQVLAGSSMPRPAAAAYLGPRLPIPAYHPPTGSSPGVSTIRPN 559
G++R +MPFP +LA S++P A A+LGPR P+P +H P ++P S ++
Sbjct: 362 GMGMEMGMGMNRSVMPFPNMLASSTLPAATATAHLGPRFPMPPFHMPHVATPDSSRMQ-G 420
Query: 558 LSHPS---FNSLGMQSSTNQLQPHNFTDSYQHYLSLYNMQAPQCPPQTHSMP---QPSSS 397
+HP NSLG P NFTD YQ YLSL QA QT + P +PS+S
Sbjct: 421 ANHPDNNMLNSLGTLDPDQSCIP-NFTDPYQQYLSL--QQAQLQLMQTMNQPNVSKPSTS 477
Query: 396 EGLQSLE 376
G ++ E
Sbjct: 478 RGQENPE 484