BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003826
         (1277 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002534138.1| Protein YIF1A, putative [Ricinus communis] g...   391   e-106
ref|XP_004152088.1| PREDICTED: protein YIF1B-A-like [Cucumis sat...   385   e-104
ref|XP_002268449.2| PREDICTED: protein YIF1B [Vitis vinifera]         384   e-104
emb|CBI36691.3| unnamed protein product [Vitis vinifera]              384   e-104
ref|NP_191509.2| YIF1 integral membrane domain-containing protei...   382   e-103

>ref|XP_002534138.1| Protein YIF1A, putative [Ricinus communis]
           gi|223525796|gb|EEF28242.1| Protein YIF1A, putative
           [Ricinus communis]
          Length = 269

 Score =  391 bits (1004), Expect = e-106
 Identities = 197/283 (69%), Positives = 211/283 (74%), Gaps = 6/283 (2%)
 Frame = +3

Query: 72  MYDNMGGAP------LNPQPNPFGNAFAGASSGLIRGGLXXXXXXXXXXXXXXXXXXXXX 233
           MY+N+G  P       NPQPNPFGNAF GA SGLIRGGL                     
Sbjct: 1   MYNNVGTQPGVPRPPTNPQPNPFGNAFYGAGSGLIRGGLGAYG----------------- 43

Query: 234 XXXERIFGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLLPFLHRGHWTRITEPV 413
              E+I GSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVL PFLHRGHWTRITEPV
Sbjct: 44  ---EKILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPV 100

Query: 414 GGRLSYKPPVYDINAPDLYIPFMAFGTYVILAGFSLGLLGKFSPEALSLQFTXXXXXXXX 593
           GGRLSYKPP+YDINAPDLYIPFMAFGTY++LAG SLGL GKFSPE L+  F         
Sbjct: 101 GGRLSYKPPIYDINAPDLYIPFMAFGTYIVLAGLSLGLNGKFSPENLNWLFVKGLLGWFM 160

Query: 594 XXXXXXXXXXXXXXXEAPLLDIVAYGGYAFTGICVAVLGRILWSYSYYFLMPWTCLCMGV 773
                          EAPLLDIVAY GY FTG+C+AVLGRI  +YSYYFLMPW CLCMG+
Sbjct: 161 QVALLKVTLLSLGSGEAPLLDIVAYAGYTFTGMCIAVLGRIFINYSYYFLMPWACLCMGI 220

Query: 774 FLVKTMKRVLFAEVRTYDSSRHHYLLLFMALAQFPLFFWLGSL 902
           FLVKTMKRVLFAEVRTYDSSRHHYLLLF+ALAQFPLF WLG++
Sbjct: 221 FLVKTMKRVLFAEVRTYDSSRHHYLLLFIALAQFPLFTWLGNI 263


>ref|XP_004152088.1| PREDICTED: protein YIF1B-A-like [Cucumis sativus]
           gi|449502274|ref|XP_004161595.1| PREDICTED: protein
           YIF1B-A-like [Cucumis sativus]
          Length = 269

 Score =  385 bits (990), Expect = e-104
 Identities = 196/288 (68%), Positives = 212/288 (73%), Gaps = 6/288 (2%)
 Frame = +3

Query: 72  MYDNMGGAPLNP------QPNPFGNAFAGASSGLIRGGLXXXXXXXXXXXXXXXXXXXXX 233
           MY+N+   P  P      QPNPFGNAF GA SGLIRGGL                     
Sbjct: 1   MYNNVEAQPAAPKPPASSQPNPFGNAFYGAGSGLIRGGLGAYG----------------- 43

Query: 234 XXXERIFGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLLPFLHRGHWTRITEPV 413
              E+IFGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVL PFLHRGHWTRIT+P+
Sbjct: 44  ---EKIFGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITDPI 100

Query: 414 GGRLSYKPPVYDINAPDLYIPFMAFGTYVILAGFSLGLLGKFSPEALSLQFTXXXXXXXX 593
           GGRLSYKPP+YDINAPDLYIPFMAFGTYV+LAGFSLGL GKF+PEALS  F         
Sbjct: 101 GGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFM 160

Query: 594 XXXXXXXXXXXXXXXEAPLLDIVAYGGYAFTGICVAVLGRILWSYSYYFLMPWTCLCMGV 773
                          EAPLLDIVAY GYAFTG+C+A +GRI   YSYYFLMPW  LCMG+
Sbjct: 161 QVMLLKVTLLSLGSGEAPLLDIVAYAGYAFTGLCLAAIGRISLKYSYYFLMPWMALCMGI 220

Query: 774 FLVKTMKRVLFAEVRTYDSSRHHYLLLFMALAQFPLFFWLGSLGA*FL 917
           FLVKTMKRVLFAEVRTYDSSRHHYLLLF+ALAQFPLF WLG++   +L
Sbjct: 221 FLVKTMKRVLFAEVRTYDSSRHHYLLLFIALAQFPLFTWLGNVSVNWL 268


>ref|XP_002268449.2| PREDICTED: protein YIF1B [Vitis vinifera]
          Length = 348

 Score =  384 bits (986), Expect = e-104
 Identities = 194/277 (70%), Positives = 206/277 (74%), Gaps = 1/277 (0%)
 Frame = +3

Query: 90  GAPLNPQPN-PFGNAFAGASSGLIRGGLXXXXXXXXXXXXXXXXXXXXXXXXERIFGSSS 266
           G   NPQPN PFGNAF GA SGLIRGGL                        E+I GSSS
Sbjct: 91  GPAANPQPNNPFGNAFYGAGSGLIRGGLGAYG--------------------EKILGSSS 130

Query: 267 EYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLLPFLHRGHWTRITEPVGGRLSYKPPVY 446
           EYVQSNISRYFSDPQYYFQVND YVRNKLKVVL PFLHRGHWTRITEPVGGRLSYKPP+Y
Sbjct: 131 EYVQSNISRYFSDPQYYFQVNDHYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIY 190

Query: 447 DINAPDLYIPFMAFGTYVILAGFSLGLLGKFSPEALSLQFTXXXXXXXXXXXXXXXXXXX 626
           DINAPDLYIPFMAFGTYVILAG SLGL GKF+PEAL+  F                    
Sbjct: 191 DINAPDLYIPFMAFGTYVILAGLSLGLRGKFTPEALNWLFIKGLVGWCLQVSLLKVSLLS 250

Query: 627 XXXXEAPLLDIVAYGGYAFTGICVAVLGRILWSYSYYFLMPWTCLCMGVFLVKTMKRVLF 806
               EAPLLDIVAY GY FTG+C+AV GRI WSYSYYFLMPW CLCMG+FLVKTMKRVLF
Sbjct: 251 LGSGEAPLLDIVAYAGYTFTGMCLAVFGRIAWSYSYYFLMPWACLCMGIFLVKTMKRVLF 310

Query: 807 AEVRTYDSSRHHYLLLFMALAQFPLFFWLGSLGA*FL 917
           AEVR+YDSSRHHYLLLF+ALAQ PLF WLG++   +L
Sbjct: 311 AEVRSYDSSRHHYLLLFIALAQLPLFIWLGNISVHWL 347


>emb|CBI36691.3| unnamed protein product [Vitis vinifera]
          Length = 337

 Score =  384 bits (986), Expect = e-104
 Identities = 194/277 (70%), Positives = 206/277 (74%), Gaps = 1/277 (0%)
 Frame = +3

Query: 90  GAPLNPQPN-PFGNAFAGASSGLIRGGLXXXXXXXXXXXXXXXXXXXXXXXXERIFGSSS 266
           G   NPQPN PFGNAF GA SGLIRGGL                        E+I GSSS
Sbjct: 80  GPAANPQPNNPFGNAFYGAGSGLIRGGLGAYG--------------------EKILGSSS 119

Query: 267 EYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLLPFLHRGHWTRITEPVGGRLSYKPPVY 446
           EYVQSNISRYFSDPQYYFQVND YVRNKLKVVL PFLHRGHWTRITEPVGGRLSYKPP+Y
Sbjct: 120 EYVQSNISRYFSDPQYYFQVNDHYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIY 179

Query: 447 DINAPDLYIPFMAFGTYVILAGFSLGLLGKFSPEALSLQFTXXXXXXXXXXXXXXXXXXX 626
           DINAPDLYIPFMAFGTYVILAG SLGL GKF+PEAL+  F                    
Sbjct: 180 DINAPDLYIPFMAFGTYVILAGLSLGLRGKFTPEALNWLFIKGLVGWCLQVSLLKVSLLS 239

Query: 627 XXXXEAPLLDIVAYGGYAFTGICVAVLGRILWSYSYYFLMPWTCLCMGVFLVKTMKRVLF 806
               EAPLLDIVAY GY FTG+C+AV GRI WSYSYYFLMPW CLCMG+FLVKTMKRVLF
Sbjct: 240 LGSGEAPLLDIVAYAGYTFTGMCLAVFGRIAWSYSYYFLMPWACLCMGIFLVKTMKRVLF 299

Query: 807 AEVRTYDSSRHHYLLLFMALAQFPLFFWLGSLGA*FL 917
           AEVR+YDSSRHHYLLLF+ALAQ PLF WLG++   +L
Sbjct: 300 AEVRSYDSSRHHYLLLFIALAQLPLFIWLGNISVHWL 336


>ref|NP_191509.2| YIF1 integral membrane domain-containing protein [Arabidopsis
           thaliana] gi|332646412|gb|AEE79933.1| YIF1 integral
           membrane domain-containing protein [Arabidopsis
           thaliana] gi|385137882|gb|AFI41202.1| HRF1 protein,
           partial [Arabidopsis thaliana]
          Length = 269

 Score =  382 bits (980), Expect = e-103
 Identities = 190/288 (65%), Positives = 211/288 (73%), Gaps = 6/288 (2%)
 Frame = +3

Query: 72  MYDNMGGAP------LNPQPNPFGNAFAGASSGLIRGGLXXXXXXXXXXXXXXXXXXXXX 233
           MY+NMG  P       NPQP+PFGN F+G  SGLIR GL                     
Sbjct: 1   MYNNMGPRPGMAMPQANPQPSPFGNPFSGPGSGLIRSGLGAYG----------------- 43

Query: 234 XXXERIFGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLLPFLHRGHWTRITEPV 413
              E+IFGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLK+VLLPFLHRGHWTRI+EPV
Sbjct: 44  ---EKIFGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKIVLLPFLHRGHWTRISEPV 100

Query: 414 GGRLSYKPPVYDINAPDLYIPFMAFGTYVILAGFSLGLLGKFSPEALSLQFTXXXXXXXX 593
           GGRLSYKPP+YDINAPDLYIP MAFGTYV+LAG SLGL GKF+PEAL+  F         
Sbjct: 101 GGRLSYKPPIYDINAPDLYIPLMAFGTYVVLAGLSLGLYGKFTPEALNWLFVKGMVGWFL 160

Query: 594 XXXXXXXXXXXXXXXEAPLLDIVAYGGYAFTGICVAVLGRILWSYSYYFLMPWTCLCMGV 773
                          EAPLLDIVAY GY FTG+C+AVLG+I+W YSYY L+PWTCLC GV
Sbjct: 161 QVMLLKITLLSLGSGEAPLLDIVAYAGYTFTGLCLAVLGKIIWGYSYYVLIPWTCLCTGV 220

Query: 774 FLVKTMKRVLFAEVRTYDSSRHHYLLLFMALAQFPLFFWLGSLGA*FL 917
           FLVKTMKRVLFAE R+YDSSRHHYLL+F+ALAQFPL  WLG++   +L
Sbjct: 221 FLVKTMKRVLFAESRSYDSSRHHYLLIFVALAQFPLLIWLGNISVNWL 268