BLASTX nr result
ID: Coptis24_contig00003755
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00003755
(1336 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002324389.1| predicted protein [Populus trichocarpa] gi|2... 428 e-117
ref|XP_002282492.1| PREDICTED: F-box protein AFR [Vitis vinifera] 395 e-107
ref|XP_002878767.1| hypothetical protein ARALYDRAFT_481310 [Arab... 339 8e-91
ref|XP_002524541.1| Protein AFR, putative [Ricinus communis] gi|... 337 3e-90
gb|AAM65112.1| unknown [Arabidopsis thaliana] 333 6e-89
>ref|XP_002324389.1| predicted protein [Populus trichocarpa] gi|222865823|gb|EEF02954.1|
predicted protein [Populus trichocarpa]
Length = 366
Score = 428 bits (1100), Expect = e-117
Identities = 212/350 (60%), Positives = 257/350 (73%), Gaps = 14/350 (4%)
Frame = +1
Query: 181 LIPGLPDEVAEHCLLYLPYPYQSLVRSVSSSWNKTITHPAFXXXXXXXXXXXXXPYIFVF 360
LIPGLPDEVAE CLLYLPYPYQ+LVRSVSSSWN+ IT PAF P++FV
Sbjct: 19 LIPGLPDEVAELCLLYLPYPYQALVRSVSSSWNRAITDPAFLVSKKTLSLSL--PHVFVL 76
Query: 361 SFQKSTPSNFQWQAFDPKSSRWFILPPMP----VYPRGFACTS--RQGTLYVLGGRVSDT 522
+F KST + QWQA DP+S RWF+LPPMP V P FACTS RQG L VLGG SDT
Sbjct: 77 AFHKST-ARIQWQALDPRSGRWFVLPPMPCPKTVCPPAFACTSLPRQGKLLVLGGMRSDT 135
Query: 523 EES--TLITYSTTTNKWSLAKPMLRPRSFFAAGCIGSKIFAAGGSEEDVV--LSSMECYD 690
E S + Y ++TN+WS+ PML PRSFFA G + KI A GGS + ++++ECY+
Sbjct: 136 ETSMDSTFIYRSSTNQWSIGSPMLTPRSFFATGNVKGKIIAVGGSASGISDSITAVECYN 195
Query: 691 SNSDTWTPVANMHSGLARYDAAVIGKKMYVTEGWTWPFSFSPRGWVYDAELNAWEEMRLG 870
S S W P A M GLARYD+AV+G +MYVTEGWTWPF FSPR +YDA+ + W+EM G
Sbjct: 196 SESGKWGPAAKMRMGLARYDSAVVGNRMYVTEGWTWPFMFSPRAGIYDADKDTWQEMSNG 255
Query: 871 MREGWTGISVVLDDRLFVISEHGDCKVKYYVPEDDTWQYVGGQGFPSGALQRPFSVSAVE 1050
MREGWTG+SVVL DRLFVISEHGDC +K YVP+ DTWQYVGG FP A+QRPF+V+ VE
Sbjct: 256 MREGWTGLSVVLGDRLFVISEHGDCPMKVYVPDLDTWQYVGGDRFPREAMQRPFAVNGVE 315
Query: 1051 GKIYVVSCGLNLAVGTVFDC----FRVEWEVVEAPKAFQNFLPSNSQIVY 1188
GK+YVVSCGLN+AVG+V++ F V+W+V+ AP+AF +F PSN Q++Y
Sbjct: 316 GKVYVVSCGLNVAVGSVYEADKGEFCVKWQVLVAPRAFHDFAPSNCQVLY 365
>ref|XP_002282492.1| PREDICTED: F-box protein AFR [Vitis vinifera]
Length = 370
Score = 395 bits (1015), Expect = e-107
Identities = 208/353 (58%), Positives = 245/353 (69%), Gaps = 17/353 (4%)
Frame = +1
Query: 181 LIPGLPDEVAEHCLLYLPYPYQSLVRSVSSSWNKTITHPAFXXXXXXXXXXXXXPYIFVF 360
LIPGLP+E+AE CLL++PYPYQ+L RSVSSSWNK IT P+F PY+FVF
Sbjct: 20 LIPGLPEEIAELCLLHVPYPYQALARSVSSSWNKAITDPSFLLSKKILSLSQ--PYLFVF 77
Query: 361 SFQKSTPSNFQWQAFDPKSSRWFILPPMP----VYPRGFACTS--RQGTLYVLGGRVSD- 519
+ KST S QWQA DP+S RWF+LPPMP P G AC S G L+VLG SD
Sbjct: 78 ASSKST-SRIQWQALDPRSGRWFVLPPMPCSAAACPPGLACASLPEDGKLFVLGDLRSDG 136
Query: 520 TEESTLITYSTTTNKWSLAKPMLRPRSFFAAGCIGSKIFAAGGSEEDVV--LSSMECYDS 693
T T I Y +TN+WSLA PM PR+FFAAG I KIFAAGG V + ++E YD
Sbjct: 137 TSLHTTIMYRASTNQWSLASPMRTPRTFFAAGSINGKIFAAGGRGLGVEDSIPTVERYDP 196
Query: 694 NSDTWTPVANMHSGLARYDAAVIGKKMYVTEGWTWPFSFSPRGWVYDAELNAWEEMRLGM 873
SDTW VA M SGLARYDAAV+G K+YVTEGWTWPFSFSPRG VYD + + W+EM LGM
Sbjct: 197 VSDTWAAVAKMRSGLARYDAAVVGNKLYVTEGWTWPFSFSPRGGVYDGDRDTWQEMSLGM 256
Query: 874 REGWTGISVVLDDRLFVISEHGDCKVKYYVPEDDTWQYVGGQGFPSGALQRPFSVSAVEG 1053
REGWTGISVVL +RLFV+SE+GDC++K YVP+ DTW VGG FP ALQRPF+VS +E
Sbjct: 257 REGWTGISVVLRNRLFVLSEYGDCRMKVYVPDHDTWHPVGGGRFPCEALQRPFAVSTMED 316
Query: 1054 KIYVVSCGLNLAVGTVFDCFR--------VEWEVVEAPKAFQNFLPSNSQIVY 1188
+IYVVS GL++AVG V + VEWEV+ AP AF +F P N Q +Y
Sbjct: 317 RIYVVSRGLHVAVGKVHETVEASQSHHLWVEWEVMAAPIAFSDFSPCNCQPLY 369
>ref|XP_002878767.1| hypothetical protein ARALYDRAFT_481310 [Arabidopsis lyrata subsp.
lyrata] gi|297324606|gb|EFH55026.1| hypothetical protein
ARALYDRAFT_481310 [Arabidopsis lyrata subsp. lyrata]
Length = 360
Score = 339 bits (870), Expect = 8e-91
Identities = 172/350 (49%), Positives = 229/350 (65%), Gaps = 14/350 (4%)
Frame = +1
Query: 181 LIPGLPDEVAEHCLLYLPYPYQSLVRSVSSSWNKTITHPAFXXXXXXXXXXXXXPYIFVF 360
LIPGLP+++AE CLL LPYPY +L RSVSSSWNKTIT+P F PY+FVF
Sbjct: 16 LIPGLPNDIAELCLLRLPYPYHALFRSVSSSWNKTITNPRFLFSKQSLSISS--PYLFVF 73
Query: 361 SFQKSTPSNFQWQAFDPKSSRWFILPPMPVY------PRGFACTS--RQGTLYVLGGRVS 516
+F KST + QWQ+ D S RWF+LPPMP P +C S RQG L+VLGG
Sbjct: 74 AFNKST-AKMQWQSLDLTSGRWFVLPPMPKSFNQISSPHALSCASSPRQGKLFVLGG--G 130
Query: 517 DTEESTLITYSTTTNKWSLAKPMLRPRSFFAAGCIGSKIFAAGGSE--EDVVLSSMECYD 690
D S ++ Y+ TN+WS PM+ PR++F AG + KI A GGS + +E YD
Sbjct: 131 DLNRSAVV-YTALTNRWSCISPMMSPRTYFNAGNVNGKIMAVGGSVGGNGEATTEVESYD 189
Query: 691 SNSDTWTPVANMHSGLARYDAAVIGKKMYVTEGWTWPFSFSPRGWVYDAELNAWEEMRLG 870
++DTWT V + LA+YD+AVIGKKM VTEGW WPF F P G VYD++ + W EM G
Sbjct: 190 PDNDTWTAVKKVPMVLAKYDSAVIGKKMCVTEGWAWPFMFPPMGQVYDSDEDTWREMSSG 249
Query: 871 MREGWTGISVVLDDRLFVISEHGDCKVKYYVPEDDTWQYVGGQGFPSGALQRPFSVSAVE 1050
M+EGWTG+SVV+ DRLFVISEHGD +K Y +DDTW+YV G+ P+ ++RPF+V+ +
Sbjct: 250 MKEGWTGVSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYVSGEKLPADKMRRPFAVTGED 309
Query: 1051 GKIYVVSCGLNLAVGTVFDC----FRVEWEVVEAPKAFQNFLPSNSQIVY 1188
+++VV+ GLN+A G V + F V+W +V +PK+ F P++ ++Y
Sbjct: 310 DRVFVVAGGLNVAAGRVSEGQNGEFSVQWRMVSSPKSSTQFSPASCHVLY 359
>ref|XP_002524541.1| Protein AFR, putative [Ricinus communis] gi|223536215|gb|EEF37868.1|
Protein AFR, putative [Ricinus communis]
Length = 292
Score = 337 bits (865), Expect = 3e-90
Identities = 162/286 (56%), Positives = 204/286 (71%), Gaps = 16/286 (5%)
Frame = +1
Query: 379 PSNFQWQAFDPKSSRWFILPPMP----VYPRGFACTS--RQGTLYVLGGRVSDTEES--T 534
P + +WQA DP+S RWF+LPPMP V P GF+CTS RQG L+V+GG SDTE S T
Sbjct: 6 PPDPEWQALDPRSGRWFVLPPMPCPKSVCPPGFSCTSMPRQGKLFVMGGMRSDTETSMDT 65
Query: 535 LITYSTTTNKWSLAKPMLRPRSFFAAGCIGSKIFAAGGSEEDV--VLSSMECYDSNSDTW 708
Y T+TN+WS A PML PRSFF G KI A GGS + +++ ECYD +DTW
Sbjct: 66 TFVYRTSTNQWSTASPMLTPRSFFTVGNANGKIIAVGGSGPGIGDSITAAECYDPENDTW 125
Query: 709 TPVANMHSGLARYDAAVIGKKMYVTEGWTWPFSFSPRGWVYDAELNAWEEMRLGMREGWT 888
TP+A M +GL RYD+AV+G +MYVTEGWTWPF FSPRG VYD W+++ GMREGWT
Sbjct: 126 TPLAKMRTGLCRYDSAVVGDRMYVTEGWTWPFMFSPRGGVYDLNSETWQDLSDGMREGWT 185
Query: 889 GISVVLDDRLFVISEHGDCKVKYYVPEDDTWQYVGGQGFPSGALQRPFSVSAVEGKIYVV 1068
G++VV+ DRLFVISEHGDC +K Y+P+ DTW YVGG FP ++QRPF+VS EG IY+V
Sbjct: 186 GLNVVIGDRLFVISEHGDCPMKVYLPDLDTWCYVGGDRFPRESMQRPFAVSGAEGNIYMV 245
Query: 1069 SCGLNLAVGTVFDC------FRVEWEVVEAPKAFQNFLPSNSQIVY 1188
S GLN+A+G ++ F VEW+++ APKAF +F PSN Q++Y
Sbjct: 246 SSGLNVAIGRLYQNDSSKREFCVEWKLLAAPKAFSDFSPSNCQVLY 291
>gb|AAM65112.1| unknown [Arabidopsis thaliana]
Length = 372
Score = 333 bits (854), Expect = 6e-89
Identities = 169/350 (48%), Positives = 227/350 (64%), Gaps = 14/350 (4%)
Frame = +1
Query: 181 LIPGLPDEVAEHCLLYLPYPYQSLVRSVSSSWNKTITHPAFXXXXXXXXXXXXXPYIFVF 360
LI GLP+++AE CLL LPYPY +L RSVSSSWNKTIT+P F PY+FVF
Sbjct: 28 LISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRFLFSKQSLSISS--PYLFVF 85
Query: 361 SFQKSTPSNFQWQAFDPKSSRWFILPPMP------VYPRGFACTS--RQGTLYVLGGRVS 516
+F KST + QWQ+ D S RWF+LPPMP P +C S RQG L+VLGG
Sbjct: 86 AFNKST-ARIQWQSLDLASGRWFVLPPMPNSFTKISSPHALSCASIPRQGKLFVLGG--G 142
Query: 517 DTEESTLITYSTTTNKWSLAKPMLRPRSFFAAGCIGSKIFAAGGSE--EDVVLSSMECYD 690
D S ++ Y+ TN+WS PM+ PR++F +G + KI A GGS + +E YD
Sbjct: 143 DVNRSAVV-YTALTNRWSCISPMMSPRTYFVSGNVNGKIMAVGGSVGGNGEATTEVESYD 201
Query: 691 SNSDTWTPVANMHSGLARYDAAVIGKKMYVTEGWTWPFSFSPRGWVYDAELNAWEEMRLG 870
++DTWT V + LA+YD+AVIGK+M VTEGW WPF F P G VYD++ W EM G
Sbjct: 202 PDNDTWTVVKKLPMVLAKYDSAVIGKEMCVTEGWAWPFMFPPMGEVYDSDEGTWREMSGG 261
Query: 871 MREGWTGISVVLDDRLFVISEHGDCKVKYYVPEDDTWQYVGGQGFPSGALQRPFSVSAVE 1050
M+EGWTG+SVV+ DRLFVISEHGD +K Y +DDTW+YV G+ P ++RPF+V+ +
Sbjct: 262 MKEGWTGVSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYVSGEKLPGEKMRRPFAVTGAD 321
Query: 1051 GKIYVVSCGLNLAVGTVFD----CFRVEWEVVEAPKAFQNFLPSNSQIVY 1188
+++VV+ G+N+A G V + F VEW++V +PK+ F P++ ++Y
Sbjct: 322 DRVFVVASGINVAEGRVSEGQNGDFSVEWKMVSSPKSSIQFSPASCHVLY 371