BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003676
         (1118 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK49467.1| unknown [Lotus japonicus]                              364   2e-98
ref|XP_002275293.1| PREDICTED: ribosomal RNA small subunit methy...   356   7e-96
emb|CBI30112.3| unnamed protein product [Vitis vinifera]              352   7e-95
ref|XP_002531546.1| Nucleolar essential protein, putative [Ricin...   352   1e-94
ref|XP_002273311.1| PREDICTED: ribosomal RNA small subunit methy...   352   1e-94

>gb|AFK49467.1| unknown [Lotus japonicus]
          Length = 272

 Score =  364 bits (934), Expect = 2e-98
 Identities = 186/274 (67%), Positives = 216/274 (78%), Gaps = 1/274 (0%)
 Frame = -2

Query: 1078 MVRPFAVKGSRKRKKRDESYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNQLAGIPIIP 899
            M RPF +KG   RK++D+  K                             ++L GIPI+P
Sbjct: 1    MTRPFGMKG---RKRKDKEAKYDREEDEDEQVQPKRPMLQNAEVAAANEEDELVGIPIMP 57

Query: 898  NDQKSKS-GVIFILERASLEVAKVGKTYQILNSDDHANFLRKHNKNPGDYRPDIAHQALL 722
            +D KS +  VIFILERASLEVAKVGKTYQ+LNSDDHANFLRK+NKNPGDYRPDI HQALL
Sbjct: 58   SDHKSDNPNVIFILERASLEVAKVGKTYQLLNSDDHANFLRKNNKNPGDYRPDITHQALL 117

Query: 721  AILDSPLNKAGRLRALYVKTEKGVLFEVKPHVRMPRTFKRFCGVMLQLLQKLSISATSKR 542
            +ILDSPLNKAGRL+A+Y+KTEKGVL EVKP+VR+PRTFKRF GVMLQLLQKLSISA  K 
Sbjct: 118  SILDSPLNKAGRLQAVYIKTEKGVLIEVKPYVRIPRTFKRFSGVMLQLLQKLSISAAGKH 177

Query: 541  EKLLRVIKNPVTQHLPVNSRKIGLSYSSEKLVQLQDYVAAASNDVNLVFVVGAMAHGKID 362
            EKLLR IKNPVTQ+LPVNSRKIGLS+SSEKLV + DYV+   +D+NLVFVVGAMAHGK++
Sbjct: 178  EKLLRTIKNPVTQYLPVNSRKIGLSFSSEKLVNMNDYVSTVPSDMNLVFVVGAMAHGKVE 237

Query: 361  KEYTDDFISVSGYPLSAACCIARICNTLELKWRI 260
             +YT+D+I+VSGYPLSAA CI RICN LE KW+I
Sbjct: 238  TDYTEDYIAVSGYPLSAAYCITRICNALEAKWKI 271


>ref|XP_002275293.1| PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Vitis
            vinifera] gi|296085405|emb|CBI29137.3| unnamed protein
            product [Vitis vinifera]
          Length = 271

 Score =  356 bits (913), Expect = 7e-96
 Identities = 182/273 (66%), Positives = 214/273 (78%)
 Frame = -2

Query: 1078 MVRPFAVKGSRKRKKRDESYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNQLAGIPIIP 899
            MVRP+A+KG  KRKKR+E+Y                               +L GIP++P
Sbjct: 1    MVRPYAIKG-HKRKKREENYDREEVEQLLEEETAATATQDEKKAEEVTL--ELPGIPLVP 57

Query: 898  NDQKSKSGVIFILERASLEVAKVGKTYQILNSDDHANFLRKHNKNPGDYRPDIAHQALLA 719
            ++  +K+GV FILERA LEVAKVGK+YQ+L+S+DHANFLRK+NKNP +YRPDI HQALL 
Sbjct: 58   SNLNNKTGVTFILERACLEVAKVGKSYQLLSSEDHANFLRKNNKNPAEYRPDILHQALLT 117

Query: 718  ILDSPLNKAGRLRALYVKTEKGVLFEVKPHVRMPRTFKRFCGVMLQLLQKLSISATSKRE 539
            ILDSPLNKAGRLRA+YV+TEKGVLFEVKPHVR+PRT+KRF G+MLQLLQKLSI+A  KRE
Sbjct: 118  ILDSPLNKAGRLRAVYVRTEKGVLFEVKPHVRIPRTYKRFSGIMLQLLQKLSITAVGKRE 177

Query: 538  KLLRVIKNPVTQHLPVNSRKIGLSYSSEKLVQLQDYVAAASNDVNLVFVVGAMAHGKIDK 359
            KLLRVIKNPVTQ+LPVNSRKIG SYSSEK + ++DYVAA S+DV+LVFVVGAMAHGKI  
Sbjct: 178  KLLRVIKNPVTQYLPVNSRKIGFSYSSEKSIPMRDYVAAVSDDVDLVFVVGAMAHGKISN 237

Query: 358  EYTDDFISVSGYPLSAACCIARICNTLELKWRI 260
            +YTDDFI++SGYPLSAA C   IC  L  KW I
Sbjct: 238  DYTDDFIAISGYPLSAAWCTYLICGALMQKWNI 270


>emb|CBI30112.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  352 bits (904), Expect = 7e-95
 Identities = 180/275 (65%), Positives = 213/275 (77%)
 Frame = -2

Query: 1084 KKMVRPFAVKGSRKRKKRDESYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNQLAGIPI 905
            ++MVRP+ +KG  KRK+R+E+Y                              ++L GIP+
Sbjct: 47   QEMVRPYTIKG-HKRKRREENYDKEEVKQLLEEETAATATQDENKAEEIT--HELPGIPL 103

Query: 904  IPNDQKSKSGVIFILERASLEVAKVGKTYQILNSDDHANFLRKHNKNPGDYRPDIAHQAL 725
            +P    +K+GV FILERA LEVAKVGK+YQ+L+S+DHANFLRK+NKNP DYRPDI HQAL
Sbjct: 104  VPFKSNNKTGVTFILERACLEVAKVGKSYQLLSSEDHANFLRKNNKNPADYRPDILHQAL 163

Query: 724  LAILDSPLNKAGRLRALYVKTEKGVLFEVKPHVRMPRTFKRFCGVMLQLLQKLSISATSK 545
            L ILDSPLNKAGRLRA+YV+TEKGVLFEVKPHVR+PRT+KRF G+MLQLLQKLSI+A  K
Sbjct: 164  LTILDSPLNKAGRLRAVYVRTEKGVLFEVKPHVRIPRTYKRFSGIMLQLLQKLSITAVGK 223

Query: 544  REKLLRVIKNPVTQHLPVNSRKIGLSYSSEKLVQLQDYVAAASNDVNLVFVVGAMAHGKI 365
            REKLLRVIKNPVTQ+LPVNSRKIG SYSSEK   ++DYVAA S+DV+LVFVVGAMAHGKI
Sbjct: 224  REKLLRVIKNPVTQYLPVNSRKIGFSYSSEKSTPIRDYVAAVSDDVDLVFVVGAMAHGKI 283

Query: 364  DKEYTDDFISVSGYPLSAACCIARICNTLELKWRI 260
              +YTDDFI++SGYPLSA+ C   IC  L  KW I
Sbjct: 284  SNDYTDDFIAISGYPLSASWCTYLICGALMQKWNI 318


>ref|XP_002531546.1| Nucleolar essential protein, putative [Ricinus communis]
            gi|223528837|gb|EEF30840.1| Nucleolar essential protein,
            putative [Ricinus communis]
          Length = 294

 Score =  352 bits (903), Expect = 1e-94
 Identities = 186/294 (63%), Positives = 218/294 (74%), Gaps = 21/294 (7%)
 Frame = -2

Query: 1078 MVRPFAVKGSRKRKKRDESYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXVN--------- 926
            MVRP+ +KG  KRKKR+E Y                              +         
Sbjct: 1    MVRPYGIKGP-KRKKREEKYDKVGDEVDEQTEESAKRAMLSKTEMPLENCSKKTEQEEEG 59

Query: 925  -----------QLAGIPIIPNDQKSKS-GVIFILERASLEVAKVGKTYQILNSDDHANFL 782
                       ++ GIPI+P+D K+K  GVIF+LE+ASLEVAKVGKTYQILNSDDHANFL
Sbjct: 60   DEGEELEGEVQEMEGIPIMPSDSKTKKPGVIFVLEKASLEVAKVGKTYQILNSDDHANFL 119

Query: 781  RKHNKNPGDYRPDIAHQALLAILDSPLNKAGRLRALYVKTEKGVLFEVKPHVRMPRTFKR 602
            RK+NKNP DYRPDI +QALL+ILDSPLNKAGRL+A+YVKTEKGVLFEVKP+VR+PRT+KR
Sbjct: 120  RKNNKNPADYRPDIVYQALLSILDSPLNKAGRLQAVYVKTEKGVLFEVKPYVRIPRTYKR 179

Query: 601  FCGVMLQLLQKLSISATSKREKLLRVIKNPVTQHLPVNSRKIGLSYSSEKLVQLQDYVAA 422
            F G+MLQLLQKLSI+A  KREKLLRVIKNPVTQ+LPVNSRKIG SYSS+KLV++ +YVAA
Sbjct: 180  FTGIMLQLLQKLSITAAGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSDKLVKMSNYVAA 239

Query: 421  ASNDVNLVFVVGAMAHGKIDKEYTDDFISVSGYPLSAACCIARICNTLELKWRI 260
              +DV LVFVVGAMAHGKID +Y DDFI++SGYPLSAA CI+RIC  L  KW +
Sbjct: 240  VDDDVGLVFVVGAMAHGKIDCDYIDDFIAISGYPLSAAWCISRICEALADKWGV 293


>ref|XP_002273311.1| PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Vitis
            vinifera]
          Length = 271

 Score =  352 bits (902), Expect = 1e-94
 Identities = 180/273 (65%), Positives = 211/273 (77%)
 Frame = -2

Query: 1078 MVRPFAVKGSRKRKKRDESYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNQLAGIPIIP 899
            MVRP+ +KG  KRK+R+E+Y                              ++L GIP++P
Sbjct: 1    MVRPYTIKG-HKRKRREENYDKEEVKQLLEEETAATATQDENKAEEIT--HELPGIPLVP 57

Query: 898  NDQKSKSGVIFILERASLEVAKVGKTYQILNSDDHANFLRKHNKNPGDYRPDIAHQALLA 719
                +K+GV FILERA LEVAKVGK+YQ+L+S+DHANFLRK+NKNP DYRPDI HQALL 
Sbjct: 58   FKSNNKTGVTFILERACLEVAKVGKSYQLLSSEDHANFLRKNNKNPADYRPDILHQALLT 117

Query: 718  ILDSPLNKAGRLRALYVKTEKGVLFEVKPHVRMPRTFKRFCGVMLQLLQKLSISATSKRE 539
            ILDSPLNKAGRLRA+YV+TEKGVLFEVKPHVR+PRT+KRF G+MLQLLQKLSI+A  KRE
Sbjct: 118  ILDSPLNKAGRLRAVYVRTEKGVLFEVKPHVRIPRTYKRFSGIMLQLLQKLSITAVGKRE 177

Query: 538  KLLRVIKNPVTQHLPVNSRKIGLSYSSEKLVQLQDYVAAASNDVNLVFVVGAMAHGKIDK 359
            KLLRVIKNPVTQ+LPVNSRKIG SYSSEK   ++DYVAA S+DV+LVFVVGAMAHGKI  
Sbjct: 178  KLLRVIKNPVTQYLPVNSRKIGFSYSSEKSTPIRDYVAAVSDDVDLVFVVGAMAHGKISN 237

Query: 358  EYTDDFISVSGYPLSAACCIARICNTLELKWRI 260
            +YTDDFI++SGYPLSA+ C   IC  L  KW I
Sbjct: 238  DYTDDFIAISGYPLSASWCTYLICGALMQKWNI 270