BLASTX nr result
ID: Coptis24_contig00003584
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00003584
(1783 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003607639.1| F-box/LRR-repeat protein [Medicago truncatul... 120 9e-25
ref|NP_001189735.1| F-box protein [Arabidopsis thaliana] gi|1222... 114 1e-22
ref|NP_181801.1| F-box protein [Arabidopsis thaliana] gi|4512680... 114 1e-22
ref|XP_003635004.1| PREDICTED: putative F-box/LRR-repeat protein... 108 5e-21
ref|XP_003589308.1| F-box/FBD/LRR-repeat protein [Medicago trunc... 106 2e-20
>ref|XP_003607639.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355508694|gb|AES89836.1| F-box/LRR-repeat protein
[Medicago truncatula]
Length = 467
Score = 120 bits (302), Expect = 9e-25
Identities = 123/433 (28%), Positives = 190/433 (43%), Gaps = 14/433 (3%)
Frame = -1
Query: 1420 KNRISHMPDPIRSHIVSFLPMKEAMRSSILSRQWRYVCSSLSNLKFDQVDFEETKKRKRG 1241
K+ IS +P+ I +I+S L +EA+R+SIL+ +WRY+ + L FD D + K
Sbjct: 22 KDMISDLPEGILYYILSRLSTEEAVRTSILATKWRYLWTQLP--VFDFRDSSPKRNSKSP 79
Query: 1240 D-FRDFVDETLLSHNGSDIKRFSLTVKVGDTFISSRHLNSWISFAVKHNVQDFEISSYGD 1064
D D VD+ L H + IK+ + + V T + + ++S +S A+ H+V D ++ +
Sbjct: 80 DCLVDLVDQLL--HKSNRIKKLFIELPV--TIVDAGKVSSMLSSALMHDVHDLTLNLESE 135
Query: 1063 DIEKLPQCLFXXXXXXXXXL--YSVVIKGPRNIKFPMLKSLALLEVTINDENLVNSLLSS 890
+ + F + + P I FP LK L+ VT +E L S
Sbjct: 136 NSRFVLPNSFSASRSLTKLDIVFGFLDSVPDGICFPSLKILSFAHVTFTNEKSAQRLFSG 195
Query: 889 STCPVIEKLVMRLCSMAINTLSISIPTLKHLHL------LDSNYPDINISNSVLRKLKYM 728
CPV++ L C +S++IPTLK L + LD N I L L Y
Sbjct: 196 --CPVLQDLSFEKCYWVNINISVAIPTLKKLDIFFRSSSLDRNSCMFKIDAVNLLSLSYK 253
Query: 727 CGKPPNLIYENLVSVVSAKLQFELDFSYYGGSMDSVSKCASKILVWLRNVEKLCLMSGFI 548
N N S+V A + +L F + V+ A ++ L +VE L L I
Sbjct: 254 SNPTINCFLVNSTSIVDANI--DLGFFCVQNNELHVAVFAIELFSRLGSVESLRLSDQTI 311
Query: 547 EFLSRNHYLLAGVVPFSCCSLKHLDVDMFPTENQAQVIALLLRSYPHLQTLXXXXXXXXX 368
+ L+ L + F +L L+V + +V+A +LR P L+ L
Sbjct: 312 QCLNYAKSALHLLPSFK--NLTRLEVHF--DDPSCEVLADILRKSPKLEFLHIYGVHLVS 367
Query: 367 XXXXXXXXXXEF----WKPKQLPAGDILNSLKTVDIEDFKGSDGELYLVRFLLDNAKVLE 200
W LP +SLK+ DI DF+G + E+ LV+FLL+N +L
Sbjct: 368 CSRFSSGSYLSLDSEDWTSDSLPCC-FKSSLKSCDISDFRGDEAEIRLVKFLLENVTLLR 426
Query: 199 NMNI-CYSKIEKK 164
MNI C + KK
Sbjct: 427 EMNIYCTGYLSKK 439
>ref|NP_001189735.1| F-box protein [Arabidopsis thaliana]
gi|122223784|sp|Q0WR05.1|FBL39_ARATH RecName:
Full=F-box/LRR-repeat protein At2g42730
gi|110736977|dbj|BAF00444.1| hypothetical protein
[Arabidopsis thaliana] gi|330255068|gb|AEC10162.1| F-box
protein [Arabidopsis thaliana]
Length = 457
Score = 114 bits (284), Expect = 1e-22
Identities = 113/433 (26%), Positives = 197/433 (45%), Gaps = 21/433 (4%)
Frame = -1
Query: 1420 KNRISHMPDPIRSHIVSFLPMKEAMRSSILSRQWRYVCSSLSNLKFDQVDFEETKKRKR- 1244
K+ IS +PD + I+S + KEA+ +S+LS++W+ + +SNL D K+ R
Sbjct: 4 KDVISRLPDEVLGRILSLISTKEAVSTSVLSKRWKNMFVLVSNLDIDDRQSVPKTKQNRI 63
Query: 1243 ---GDFRDFVDETLLSHNGSDIKRFSLTVKVG-DTFISSRHLNSWISFAVKHNVQDFEI- 1079
++ FVD+ L + GS IK+ +L VG S + SWI + H V D ++
Sbjct: 64 EIHRNYMAFVDKLLDTQRGSSIKKLTLKSHVGVRGGTDSSRIQSWICNVLDHGVMDLDVF 123
Query: 1078 SSYGDDIEKLPQCLF-XXXXXXXXXLYSVVIKGPRNIKFPMLKSLALLEVT-INDENLVN 905
+ +P +F IK +++ P+L++L L V + N+V
Sbjct: 124 ITLKGKSPPVPAMIFKSKTLVKLRVGRGFTIKLSQDVSLPLLRTLCLDSVNFVGGHNVVG 183
Query: 904 SLLSSSTCPVIEKLVMRLCSMAINTLSISIPTLKHLHL-LDSNYPDINISNSVLRKLK-- 734
+L+ S CPV+E+LV+ T S+S P+LK LH+ D + I++ L K
Sbjct: 184 TLI--SRCPVLEELVVEERRCVDWTCSVSSPSLKRLHIRFDRKFTSISLDAPNLIYYKHS 241
Query: 733 -YMCGKPPNLIYENLVSVVSAKLQFELD----FSYYGGSMDSVSKCASKILVWLRNVEKL 569
Y+ GK PN+ L S++ A+L +D GS+ S+ ++ +RNV L
Sbjct: 242 GYVLGKYPNV---KLDSLIEARLNLRMDETRMVGVRNGSLGSIPADMRNLINGIRNVRIL 298
Query: 568 CLMSGFIEFLSRNHYLLAGVVPFSCCSLKHLD--VDMFPTENQA---QVIALLLRSYPHL 404
L S +E L FSC + D V + ++A Q++ LL+++ P+L
Sbjct: 299 HLSSHTLELLY-----------FSCKEMPLFDSLVSLSIGNDKARGWQMLPLLIKNSPNL 347
Query: 403 QTLXXXXXXXXXXXXXXXXXXXEFWKPKQLPAGDILNSLKTVDIEDFKGSDGELYLVRFL 224
+TL + + + + + +K ++I ++G+ EL ++
Sbjct: 348 ETL-IFMGLDHYITNRCGDVCVCYDTDESITSCLSSSQVKVLEILSYQGTTRELNQMKHF 406
Query: 223 LDNAKVLENMNIC 185
L+ LE + IC
Sbjct: 407 LEKLPCLELVKIC 419
>ref|NP_181801.1| F-box protein [Arabidopsis thaliana] gi|4512680|gb|AAD21734.1|
hypothetical protein [Arabidopsis thaliana]
gi|330255067|gb|AEC10161.1| F-box protein [Arabidopsis
thaliana]
Length = 737
Score = 114 bits (284), Expect = 1e-22
Identities = 113/433 (26%), Positives = 197/433 (45%), Gaps = 21/433 (4%)
Frame = -1
Query: 1420 KNRISHMPDPIRSHIVSFLPMKEAMRSSILSRQWRYVCSSLSNLKFDQVDFEETKKRKR- 1244
K+ IS +PD + I+S + KEA+ +S+LS++W+ + +SNL D K+ R
Sbjct: 4 KDVISRLPDEVLGRILSLISTKEAVSTSVLSKRWKNMFVLVSNLDIDDRQSVPKTKQNRI 63
Query: 1243 ---GDFRDFVDETLLSHNGSDIKRFSLTVKVG-DTFISSRHLNSWISFAVKHNVQDFEI- 1079
++ FVD+ L + GS IK+ +L VG S + SWI + H V D ++
Sbjct: 64 EIHRNYMAFVDKLLDTQRGSSIKKLTLKSHVGVRGGTDSSRIQSWICNVLDHGVMDLDVF 123
Query: 1078 SSYGDDIEKLPQCLF-XXXXXXXXXLYSVVIKGPRNIKFPMLKSLALLEVT-INDENLVN 905
+ +P +F IK +++ P+L++L L V + N+V
Sbjct: 124 ITLKGKSPPVPAMIFKSKTLVKLRVGRGFTIKLSQDVSLPLLRTLCLDSVNFVGGHNVVG 183
Query: 904 SLLSSSTCPVIEKLVMRLCSMAINTLSISIPTLKHLHL-LDSNYPDINISNSVLRKLK-- 734
+L+ S CPV+E+LV+ T S+S P+LK LH+ D + I++ L K
Sbjct: 184 TLI--SRCPVLEELVVEERRCVDWTCSVSSPSLKRLHIRFDRKFTSISLDAPNLIYYKHS 241
Query: 733 -YMCGKPPNLIYENLVSVVSAKLQFELD----FSYYGGSMDSVSKCASKILVWLRNVEKL 569
Y+ GK PN+ L S++ A+L +D GS+ S+ ++ +RNV L
Sbjct: 242 GYVLGKYPNV---KLDSLIEARLNLRMDETRMVGVRNGSLGSIPADMRNLINGIRNVRIL 298
Query: 568 CLMSGFIEFLSRNHYLLAGVVPFSCCSLKHLD--VDMFPTENQA---QVIALLLRSYPHL 404
L S +E L FSC + D V + ++A Q++ LL+++ P+L
Sbjct: 299 HLSSHTLELLY-----------FSCKEMPLFDSLVSLSIGNDKARGWQMLPLLIKNSPNL 347
Query: 403 QTLXXXXXXXXXXXXXXXXXXXEFWKPKQLPAGDILNSLKTVDIEDFKGSDGELYLVRFL 224
+TL + + + + + +K ++I ++G+ EL ++
Sbjct: 348 ETL-IFMGLDHYITNRCGDVCVCYDTDESITSCLSSSQVKVLEILSYQGTTRELNQMKHF 406
Query: 223 LDNAKVLENMNIC 185
L+ LE + IC
Sbjct: 407 LEKLPCLELVKIC 419
>ref|XP_003635004.1| PREDICTED: putative F-box/LRR-repeat protein At5g02930-like [Vitis
vinifera]
Length = 610
Score = 108 bits (270), Expect = 5e-21
Identities = 127/448 (28%), Positives = 202/448 (45%), Gaps = 35/448 (7%)
Frame = -1
Query: 1423 KKNRISHMPDPIRSHIVSFLPMKEAMRSSILSRQWRYVCSSLSNLKFDQVDFEETKKRKR 1244
+K+ IS + D I I+SFLPMK + +SILS++W+++ + + NL F +R+
Sbjct: 72 RKDGISELSDSILIRILSFLPMKYVVATSILSKRWQFLWTMVPNLVF-------RFRRRD 124
Query: 1243 GDFRDFVDETLLSHNGSDIKRFSLTVKVGDTFISSRHLNSWISFAVKHNVQDFEI----- 1079
F + +D+TL+ H S IK+F + F SS +N WI A + NV++ +
Sbjct: 125 EHFVNSIDKTLVLHQNSQIKKFLIDFTYQSQFQSS--VNVWIRHATRKNVEELHLQFRVG 182
Query: 1078 ----SSYGDDIEKLPQCLFXXXXXXXXXLYSVVIKGPRNIKFPMLKSLALLEVTINDENL 911
SS D LPQ L+ L+ IK I +P LK+L++ V + D+ L
Sbjct: 183 QHIRSSPMDYAHALPQFLYANSSIVKLSLWFCNIKPTWVISWPSLKTLSIGSVELCDD-L 241
Query: 910 VNSLLSSSTCPVIEKLVMRLCSMAINTLSISIPTLKHL---HLLDSNYPD----INISNS 752
+ +LS CP +E L + C IN+L+I+ +LK L DS++ + IS
Sbjct: 242 IEEILSG--CPALESLELHHC-FGINSLNITSASLKKLVINRYWDSSHSHHRSVLKISAP 298
Query: 751 VLRKLKYMCGK-PPNLIYENLVSVVSAKLQFELDFSYYGGSMDSVS---KCASKILVWLR 584
++ L + +N+ S+ A L FEL G D K K+L +
Sbjct: 299 NVQSLGILGNMYTKECRVKNVPSLFDASLNFELAMQ-EGNPKDHYKLYHKVVMKLLKSVN 357
Query: 583 NVEKLCLMSGFIEFLSRNHYLLAGVVPFSCCS-LKHLDVDMFPTENQAQVIALLLRSYPH 407
+V+ L + + I+ LS + G S S LK L +D + IA LL+S H
Sbjct: 358 HVKALTVGTWCIQVLS----IFEGKDLSSLLSNLKCLILDTHLNKWDLPGIANLLQSSTH 413
Query: 406 LQTL----------XXXXXXXXXXXXXXXXXXXEFWKPKQLPAGDILNSLKTVD----IE 269
L+T ++W ++ + L +LKTV I
Sbjct: 414 LETFVINMISPCSQQISVEVGFSFTDLHNFDEEKYWSSREGVLANSLINLKTVKIIGVIW 473
Query: 268 DFKGSDGELYLVRFLLDNAKVLENMNIC 185
+ G + LV+FLL NA++LE + IC
Sbjct: 474 NQPGIELVFGLVKFLLKNARMLEKVEIC 501
>ref|XP_003589308.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
gi|355478356|gb|AES59559.1| F-box/FBD/LRR-repeat protein
[Medicago truncatula]
Length = 428
Score = 106 bits (264), Expect = 2e-20
Identities = 109/423 (25%), Positives = 184/423 (43%), Gaps = 9/423 (2%)
Frame = -1
Query: 1429 DQKKNRISHMPDPIRSHIVSFLPMKEAMRSSILSRQWRYVCSSLSNLKFDQVDFEETKKR 1250
D + +RIS +P I I+S LP+KEA+R+SILS +WRY ++L NL FD +T +
Sbjct: 13 DAEPDRISSLPGHIIDQILSILPIKEAVRTSILSTKWRYKWATLPNLVFDSQCISDTSED 72
Query: 1249 K---RGDFRDFVDETLLSHNGSDIKRFSLTVKVGDTFISSRHLNSWISFAVKHNVQDFEI 1079
+ +D LL H+G IK+F L+ + I ++ W + V++F +
Sbjct: 73 LLVIKSKLSRIIDHVLLLHSG-PIKKFKLSHR---ELIGVTDIDRWTLHLTRRPVKEFVL 128
Query: 1078 SSYGDDIEKLPQCLFXXXXXXXXXLYSVVIKGPRNIK-FPMLKSLALLEVTINDENLVNS 902
+ K+P CLF L++ + P + F LKSL L VT++ + N
Sbjct: 129 EIWKGQRYKIPSCLFSCQGLHHLELFNCWLIPPSTFQGFRNLKSLDLQHVTLSQDAFENL 188
Query: 901 LLSSSTCPVIEKLVMRLCSMAINTLSISIPTLKHLHLLDSNYPDINISNSVLRKLKYMCG 722
+ STCP++E+L + + N L+I P L+ + + DI+ N+
Sbjct: 189 I---STCPLLERLTL-MNFDGFNYLNIHAPNLQFFD-IGGKFEDISFKNT---------- 233
Query: 721 KPPNLIYENLVSVVSAKLQFELDFSYYGGSMDSVSKCASKILVWLRNVEKLCLMSGFIEF 542
+ ++VVS L ++F G + + + L+ L +++L + S F++
Sbjct: 234 --------SQLAVVSIGLY--VNFESSQGRLHGRTSNLVEFLIHLPRIQRLEIQSYFLK- 282
Query: 541 LSRNHYLLAGVVPFS----CCSLKHLDVDM-FPTENQAQVIALLLRSYPHLQTLXXXXXX 377
YL G VP C L +L + + F + L RS P+L+ L
Sbjct: 283 -----YLALGAVPVKLPTPCIDLSYLSIRINFYDSKEISAALCLFRSSPNLRELEILARP 337
Query: 376 XXXXXXXXXXXXXEFWKPKQLPAGDILNSLKTVDIEDFKGSDGELYLVRFLLDNAKVLEN 197
W+ L + ++ V I+ G EL + F+L + VLE
Sbjct: 338 EEQPLPLAHHADC--WEDVYLDWP--VMRVRHVRIDGISGIKPELDFISFILLYSPVLER 393
Query: 196 MNI 188
M +
Sbjct: 394 MTV 396