BLASTX nr result
ID: Coptis24_contig00003527
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00003527
(1736 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002270990.1| PREDICTED: pentatricopeptide repeat-containi... 598 e-168
gb|EEC78508.1| hypothetical protein OsI_18438 [Oryza sativa Indi... 568 e-159
ref|NP_001054633.1| Os05g0145600 [Oryza sativa Japonica Group] g... 566 e-159
ref|XP_002440585.1| hypothetical protein SORBIDRAFT_09g003510 [S... 565 e-158
ref|XP_003568951.1| PREDICTED: pentatricopeptide repeat-containi... 564 e-158
>ref|XP_002270990.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35850,
mitochondrial [Vitis vinifera]
gi|296087577|emb|CBI34833.3| unnamed protein product
[Vitis vinifera]
Length = 445
Score = 598 bits (1542), Expect = e-168
Identities = 298/446 (66%), Positives = 363/446 (81%), Gaps = 1/446 (0%)
Frame = -1
Query: 1607 LKKSIHLALSGHCQTLKRVLVTNRTFSSATAPTEEEYARRNYARNLPEYNTVISSLTFQR 1428
+KK + + C L R L R F+++T EEYA+RNYA N+ EY TV+SSLT QR
Sbjct: 1 MKKLLQIVAGQRCSPLLRAL-GRRYFAAST----EEYAKRNYASNVSEYTTVVSSLTAQR 55
Query: 1427 KNFLLRDAYEDMVLDGVKPDIDTFHSLLVGTMKGARLQDAFFFRDEMKAMGLFPDVPSYN 1248
++FLLRDAY+DM+LDGV+P D FHSL+VGTMKGARLQD+FFF D+MK MGL PDV YN
Sbjct: 56 RHFLLRDAYDDMMLDGVQPSRDIFHSLIVGTMKGARLQDSFFFIDQMKTMGLVPDVALYN 115
Query: 1247 FLISTCGKCKHSDAAIQILEEMKNNGVKPNGQTYICLLNACAATGRIDQVYAIVRDMTAA 1068
FL+STCGKCK+SD AI ILEEMK N VKP GQTYICLLNACAA+GR D+VYAIVRDMTAA
Sbjct: 116 FLVSTCGKCKNSDQAIHILEEMKKNEVKPTGQTYICLLNACAASGRTDRVYAIVRDMTAA 175
Query: 1067 GLGLNKFCYAGLVAAHVNRTPRTEETLAKIIDLVEQSKGWSSVEGANDTAENVMIGVSEE 888
GLGLNKFCYAGL+AAH N+ P T++T +KII+LVEQSKGWSS+E D AENVM+GVSEE
Sbjct: 176 GLGLNKFCYAGLIAAHKNKIPLTDDTASKIIELVEQSKGWSSIEATRDMAENVMMGVSEE 235
Query: 887 ELYNVPTAEFVHRRGGFVFRDLTVYHVALLACADLQSIETMERLLDMLAKDRKTPDIFIV 708
ELYN+PTAE+VHRR GF+ R LTVYHVAL A ADL+++E ME LL+ML K+ KTPD+F++
Sbjct: 236 ELYNIPTAEYVHRRAGFLNRQLTVYHVALHAFADLRNVEAMETLLEMLKKEGKTPDVFLI 295
Query: 707 MQTMRCYLCCGDLERGLKTFEDYI-SERPPVVELYVTLMEGAMVGHTERGMQIALDTLEK 531
MQTMRCYL G+++RGL+ FE+Y+ S +P +VELYVTL+EGAMVG+T +GM++A DTL K
Sbjct: 296 MQTMRCYLHSGNIDRGLQIFEEYMNSGKPAMVELYVTLVEGAMVGYTPKGMELAQDTLVK 355
Query: 530 MTSRGFFLNYKMGSDLLLAASGEKGGGYTTANYIWDLMQERKLNLSLPALKAYHKGLMER 351
M +RGFFL+ +MGS+LLL ASGEK GGYTTANYIWDLMQ RK+ S PA++AY+ GL ER
Sbjct: 356 MNARGFFLSPRMGSELLLVASGEKTGGYTTANYIWDLMQARKITPSFPAVEAYYNGLRER 415
Query: 350 DIAKDDPRLLHVSSKLDGARTRF*SG 273
+I +DD RL+ VS D R RF +G
Sbjct: 416 EIPEDDARLVLVSRAYDNQRLRFGTG 441
>gb|EEC78508.1| hypothetical protein OsI_18438 [Oryza sativa Indica Group]
Length = 454
Score = 568 bits (1465), Expect = e-159
Identities = 278/413 (67%), Positives = 339/413 (82%), Gaps = 1/413 (0%)
Frame = -1
Query: 1517 APTEEEYARRNYARNLPEYNTVISSLTFQRKNFLLRDAYEDMVLDGVKPDIDTFHSLLVG 1338
A + EEY RRNYA+N+ EYNTV SLT QR+++LLRDAY+DM+LDGV+P DTFH+L+VG
Sbjct: 33 ATSTEEYNRRNYAKNISEYNTVFGSLTAQRRHYLLRDAYDDMMLDGVQPVRDTFHNLIVG 92
Query: 1337 TMKGARLQDAFFFRDEMKAMGLFPDVPSYNFLISTCGKCKHSDAAIQILEEMKNNGVKPN 1158
MKG+RLQDAF+FRD+MK MGL PDV YNFLISTCGK K+SDAAI +LEEMK +GVK
Sbjct: 93 AMKGSRLQDAFYFRDQMKEMGLQPDVNLYNFLISTCGKSKNSDAAIMLLEEMKAHGVKLK 152
Query: 1157 GQTYICLLNACAATGRIDQVYAIVRDMTAAGLGLNKFCYAGLVAAHVNRTPRTEETLAKI 978
G+TY+CLLNA AATGR DQVYAIVRDMTAAGLGLNKFCYAGL+ A N+ P TEET+ KI
Sbjct: 153 GETYVCLLNALAATGRTDQVYAIVRDMTAAGLGLNKFCYAGLITAFKNKAPTTEETMTKI 212
Query: 977 IDLVEQSKGWSSVEG-ANDTAENVMIGVSEEELYNVPTAEFVHRRGGFVFRDLTVYHVAL 801
++ V+QSKGW +VE + D++EN+M+ VSEEELYN+PTAE+VHR+ FV++ +T+YHVA+
Sbjct: 213 VEFVQQSKGWKNVERVSKDSSENIMMNVSEEELYNLPTAEYVHRQ-AFVYKQMTIYHVAI 271
Query: 800 LACADLQSIETMERLLDMLAKDRKTPDIFIVMQTMRCYLCCGDLERGLKTFEDYISERPP 621
ACADL+S ET+E LLDML KD T D FI MQ MRCYL CGD++ +K FE+Y S + P
Sbjct: 272 HACADLKSKETLEVLLDMLIKDGFTYDAFIAMQAMRCYLQCGDIDSAVKIFEEYTSSKSP 331
Query: 620 VVELYVTLMEGAMVGHTERGMQIALDTLEKMTSRGFFLNYKMGSDLLLAASGEKGGGYTT 441
ELYVTL EGAM+GHT RGMQ+A +T+EKMTSR FFLN +MG+DLLLAASGEK GGYT
Sbjct: 332 PAELYVTLAEGAMIGHTPRGMQLAQETIEKMTSRNFFLNARMGTDLLLAASGEKTGGYTI 391
Query: 440 ANYIWDLMQERKLNLSLPALKAYHKGLMERDIAKDDPRLLHVSSKLDGARTRF 282
ANY+WDLMQ R++ SLPA++AY+KGL ER+I DDPRL++VS LD RF
Sbjct: 392 ANYVWDLMQNRRITPSLPAVEAYYKGLKEREIPSDDPRLMNVSRVLDNLSIRF 444
>ref|NP_001054633.1| Os05g0145600 [Oryza sativa Japonica Group] gi|51038158|gb|AAT93961.1|
unknow protein [Oryza sativa Japonica Group]
gi|51038198|gb|AAT94001.1| unkonw protein [Oryza sativa
Japonica Group] gi|113578184|dbj|BAF16547.1| Os05g0145600
[Oryza sativa Japonica Group]
gi|215686674|dbj|BAG88927.1| unnamed protein product
[Oryza sativa Japonica Group] gi|222630177|gb|EEE62309.1|
hypothetical protein OsJ_17098 [Oryza sativa Japonica
Group]
Length = 454
Score = 566 bits (1459), Expect = e-159
Identities = 278/413 (67%), Positives = 337/413 (81%), Gaps = 1/413 (0%)
Frame = -1
Query: 1517 APTEEEYARRNYARNLPEYNTVISSLTFQRKNFLLRDAYEDMVLDGVKPDIDTFHSLLVG 1338
A + EEY RRNYA N+ EYNTV SLT QR+++LLRDAY+DM+LDGV+P DTFH+L+VG
Sbjct: 33 ATSTEEYNRRNYANNISEYNTVFGSLTAQRRHYLLRDAYDDMMLDGVQPVRDTFHNLIVG 92
Query: 1337 TMKGARLQDAFFFRDEMKAMGLFPDVPSYNFLISTCGKCKHSDAAIQILEEMKNNGVKPN 1158
MKG+RLQDAF+FRD+MK MGL PDV YNFLISTCGK K+SDAAI +LEEMK +GVK
Sbjct: 93 AMKGSRLQDAFYFRDQMKEMGLQPDVNLYNFLISTCGKSKNSDAAIMLLEEMKAHGVKLK 152
Query: 1157 GQTYICLLNACAATGRIDQVYAIVRDMTAAGLGLNKFCYAGLVAAHVNRTPRTEETLAKI 978
G+TY CLLNA AATGR DQVYAIVRDMTAAGLGLNKFCYAGL+ A N+ P TEET+ KI
Sbjct: 153 GETYTCLLNALAATGRTDQVYAIVRDMTAAGLGLNKFCYAGLITAFKNKAPTTEETMTKI 212
Query: 977 IDLVEQSKGWSSVEG-ANDTAENVMIGVSEEELYNVPTAEFVHRRGGFVFRDLTVYHVAL 801
++ V+QSKGW +VE + D++EN+M+ VSEEELYN+PTAE+VHR+ FV++ +T+YHVA+
Sbjct: 213 VEFVQQSKGWKNVERVSKDSSENIMMNVSEEELYNLPTAEYVHRQ-AFVYKQMTIYHVAI 271
Query: 800 LACADLQSIETMERLLDMLAKDRKTPDIFIVMQTMRCYLCCGDLERGLKTFEDYISERPP 621
ACADL+S ET+E LLDML KD T D FI MQ MRCYL CGD++ +K FE+Y S + P
Sbjct: 272 HACADLKSKETLEVLLDMLIKDGFTYDAFIAMQAMRCYLQCGDIDSAVKIFEEYTSSKSP 331
Query: 620 VVELYVTLMEGAMVGHTERGMQIALDTLEKMTSRGFFLNYKMGSDLLLAASGEKGGGYTT 441
ELYVTL EGAM+GHT RGMQ+A +T+EKMTSR FFLN +MG+DLLLAASGEK GGYT
Sbjct: 332 PAELYVTLAEGAMIGHTPRGMQLAQETIEKMTSRNFFLNARMGTDLLLAASGEKTGGYTI 391
Query: 440 ANYIWDLMQERKLNLSLPALKAYHKGLMERDIAKDDPRLLHVSSKLDGARTRF 282
ANY+WDLMQ R++ SLPA++AY+KGL ER+I DDPRL++VS LD RF
Sbjct: 392 ANYVWDLMQNRRITPSLPAVEAYYKGLKEREIPSDDPRLMNVSRVLDNLSIRF 444
>ref|XP_002440585.1| hypothetical protein SORBIDRAFT_09g003510 [Sorghum bicolor]
gi|241945870|gb|EES19015.1| hypothetical protein
SORBIDRAFT_09g003510 [Sorghum bicolor]
Length = 452
Score = 565 bits (1456), Expect = e-158
Identities = 288/447 (64%), Positives = 348/447 (77%), Gaps = 4/447 (0%)
Frame = -1
Query: 1610 MLKKSIHLALSGHCQTLKRVLVTNRTFSSATAPTEEEYARRNYARNLPEYNTVISSLTFQ 1431
+LK S L L G + + +ATA EEYARRNYA N EYNTVI SL Q
Sbjct: 3 LLKNS--LVLQGRLRHAAAAALFTARRGAATAT--EEYARRNYADNTSEYNTVIGSLVAQ 58
Query: 1430 RKNFLLRDAYEDMVLDGVKPDIDTFHSLLVGTMKGARLQDAFFFRDEMKAMGLFPDVPSY 1251
R+ +LLRDAY+DM+LDGVKP+ DTFH+L+VGTMKG+RLQDA +FRD+MK MGL PDV Y
Sbjct: 59 RRPYLLRDAYDDMMLDGVKPERDTFHTLIVGTMKGSRLQDALYFRDQMKEMGLQPDVNLY 118
Query: 1250 NFLISTCGKCKHSDAAIQILEEMKNNGVKPNGQTYICLLNACAATGRIDQVYAIVRDMTA 1071
NFLISTCGKCK+SDAAI +LEEMK +GVK G+TYICLLNA A+TG+ DQVYAIV DM+A
Sbjct: 119 NFLISTCGKCKNSDAAIMLLEEMKAHGVKLKGETYICLLNALASTGQTDQVYAIVSDMSA 178
Query: 1070 AGLGLNKFCYAGLVAAHVNRTPRTEETLAKIIDLVEQSKGWSSVE-GANDTAENVMIGVS 894
AGLGLNKFCYAGL+ A N+TP TEET+AKI+D V QSKGW VE A D+AEN+M+ VS
Sbjct: 179 AGLGLNKFCYAGLITAFKNKTPTTEETMAKILDFVGQSKGWQYVERAAKDSAENIMMNVS 238
Query: 893 EEELYNVPTAEFVHRRGGFVFRDLTVYHVALLACADLQSIETMERLLDMLAKDRK---TP 723
EEELYN+PTAE+V+RRGGFVF+ TVYHVA+ ACA+L+S ET+E LL+M KD + T
Sbjct: 239 EEELYNLPTAEYVNRRGGFVFKQHTVYHVAIHACAELRSKETLEALLEMFNKDNRDGSTY 298
Query: 722 DIFIVMQTMRCYLCCGDLERGLKTFEDYISERPPVVELYVTLMEGAMVGHTERGMQIALD 543
D ++VMQ MRCYL CGD + +K FE+Y+S R P VELY TL EGAM+G+T RGMQ+A +
Sbjct: 299 DAYMVMQAMRCYLRCGDFDSAVKMFEEYLSSRSPPVELYATLAEGAMIGYTPRGMQLAQE 358
Query: 542 TLEKMTSRGFFLNYKMGSDLLLAASGEKGGGYTTANYIWDLMQERKLNLSLPALKAYHKG 363
T+EKM SR FFLN ++GSDLLLAA+GE GGYTTANY+WDL+Q R + L A++AYHKG
Sbjct: 359 TIEKMVSRNFFLNARLGSDLLLAAAGETTGGYTTANYVWDLLQSRNVTPYLTAVEAYHKG 418
Query: 362 LMERDIAKDDPRLLHVSSKLDGARTRF 282
LM R+I DDPRLL+VS LD + RF
Sbjct: 419 LMAREIPSDDPRLLNVSRVLDNLQLRF 445
>ref|XP_003568951.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35850,
mitochondrial-like [Brachypodium distachyon]
Length = 452
Score = 564 bits (1453), Expect = e-158
Identities = 281/417 (67%), Positives = 340/417 (81%), Gaps = 5/417 (1%)
Frame = -1
Query: 1517 APTEEEYARRNYARNLPEYNTVISSLTFQRKN----FLLRDAYEDMVLDGVKPDIDTFHS 1350
A + EEY RRNYA N+ EYNTVI SL QR++ +LLRDAY+DM+LDGV+P DTFH+
Sbjct: 30 ATSTEEYMRRNYANNVSEYNTVIGSLVQQRRHVSGPYLLRDAYDDMILDGVQPVRDTFHN 89
Query: 1349 LLVGTMKGARLQDAFFFRDEMKAMGLFPDVPSYNFLISTCGKCKHSDAAIQILEEMKNNG 1170
L+VGTMKG+R+QDAF+FRD+M+ MGL PDV YNFLISTCGKC++SDAAI +LEEMK +G
Sbjct: 90 LIVGTMKGSRMQDAFYFRDQMREMGLQPDVNLYNFLISTCGKCQNSDAAILLLEEMKAHG 149
Query: 1169 VKPNGQTYICLLNACAATGRIDQVYAIVRDMTAAGLGLNKFCYAGLVAAHVNRTPRTEET 990
VK G+TYICLLNA AATGR DQVYAIVRDMTAAGLGLNKFCYAGL+ A N+TP +E+T
Sbjct: 150 VKLKGETYICLLNALAATGRTDQVYAIVRDMTAAGLGLNKFCYAGLITAFKNKTPTSEDT 209
Query: 989 LAKIIDLVEQSKGWSSVEG-ANDTAENVMIGVSEEELYNVPTAEFVHRRGGFVFRDLTVY 813
AKI++ V+QSKGW VE AND+AEN+M+ VSEEELYN+PTAE+ HRR GF+F+ LT+Y
Sbjct: 210 TAKILEFVQQSKGWQYVERVANDSAENIMMNVSEEELYNLPTAEYAHRR-GFIFKQLTIY 268
Query: 812 HVALLACADLQSIETMERLLDMLAKDRKTPDIFIVMQTMRCYLCCGDLERGLKTFEDYIS 633
HVA+ ACADL+S ET+E LLDML KD T D FIVM +RCYL CGD++ +K FE++ S
Sbjct: 269 HVAVHACADLRSKETLEALLDMLTKDGFTNDAFIVMHAVRCYLRCGDIDSAVKMFEEFSS 328
Query: 632 ERPPVVELYVTLMEGAMVGHTERGMQIALDTLEKMTSRGFFLNYKMGSDLLLAASGEKGG 453
+P ELYV L EGAM+G+T RGMQ+A +TLEKMT R FLN KMG+DLLLAASGEK G
Sbjct: 329 SKPTPAELYVKLAEGAMIGYTPRGMQLAQETLEKMTKRNLFLNPKMGTDLLLAASGEKTG 388
Query: 452 GYTTANYIWDLMQERKLNLSLPALKAYHKGLMERDIAKDDPRLLHVSSKLDGARTRF 282
GYTTANYIWDL+Q RK+ +LPA++AYHKGL ER+I DDPRLL+V+ LD + RF
Sbjct: 389 GYTTANYIWDLLQARKIIPALPAVEAYHKGLKEREIPSDDPRLLNVAHTLDNLQLRF 445