BLASTX nr result
ID: Coptis24_contig00003524
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00003524
(1354 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002516388.1| splicing factor, putative [Ricinus communis]... 256 1e-74
ref|XP_002279887.2| PREDICTED: RNA-binding protein rsd1-like [Vi... 253 1e-73
emb|CBI37850.3| unnamed protein product [Vitis vinifera] 253 1e-73
ref|XP_003536719.1| PREDICTED: RNA-binding protein 39-like [Glyc... 249 7e-73
ref|XP_003555861.1| PREDICTED: RNA-binding protein 39-like [Glyc... 248 2e-72
>ref|XP_002516388.1| splicing factor, putative [Ricinus communis]
gi|223544486|gb|EEF46005.1| splicing factor, putative
[Ricinus communis]
Length = 609
Score = 256 bits (655), Expect(2) = 1e-74
Identities = 134/161 (83%), Positives = 140/161 (86%)
Frame = +3
Query: 477 VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGLPVMVKPSEAEKNLVQST 656
VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQ LLG PVMVKPSEAEKNLVQST
Sbjct: 252 VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQST 311
Query: 657 TAVVXXXXXXXXXXXXARRLYVGNLHFNITEDQLRQVFEPFGAVELVQLPLDESGHCKGF 836
T V ARRLYVGNLHFNITEDQLRQVFEPFG VELVQLPLDE+GHCKGF
Sbjct: 312 TTV---NAGSGPYSGGARRLYVGNLHFNITEDQLRQVFEPFGIVELVQLPLDETGHCKGF 368
Query: 837 GFVQFARLEDARNAQNLNGQLDIAGRTIKVSAVSDQVGMQE 959
GFVQFARLEDA+NA NLNGQ++IAGR IKVS V+DQ GMQ+
Sbjct: 369 GFVQFARLEDAKNALNLNGQVEIAGRPIKVSTVTDQTGMQD 409
Score = 51.2 bits (121), Expect(2) = 1e-74
Identities = 23/27 (85%), Positives = 26/27 (96%)
Frame = +2
Query: 332 QRTVFAYQISLKADEKDVFQFFSRAGK 412
QRTVFAYQI LKADE+DV++FFSRAGK
Sbjct: 225 QRTVFAYQICLKADERDVYEFFSRAGK 251
>ref|XP_002279887.2| PREDICTED: RNA-binding protein rsd1-like [Vitis vinifera]
Length = 609
Score = 253 bits (646), Expect(2) = 1e-73
Identities = 135/164 (82%), Positives = 140/164 (85%), Gaps = 2/164 (1%)
Frame = +3
Query: 477 VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGLPVMVKPSEAEKNLVQST 656
VRDVRLIMDRNSRRSKGVGYIEFYD MSVPMAIALSGQ LLG PVMVKPSEAEKNLVQST
Sbjct: 245 VRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQST 304
Query: 657 TAVV-XXXXXXXXXXXXARRLYVGNLHFNITEDQLRQVFEPFGAVELVQLPLD-ESGHCK 830
TA ARRLYVGNLHFNITEDQLRQVFEPFG VELVQLP D E+GHCK
Sbjct: 305 TAAAGGPGGLIGPYSGGARRLYVGNLHFNITEDQLRQVFEPFGTVELVQLPTDLETGHCK 364
Query: 831 GFGFVQFARLEDARNAQNLNGQLDIAGRTIKVSAVSDQVGMQEI 962
GFGFVQFARLEDAR AQ+LNGQLDIAGRTIKVS V+DQ G+Q+I
Sbjct: 365 GFGFVQFARLEDARAAQSLNGQLDIAGRTIKVSVVTDQAGLQDI 408
Score = 51.2 bits (121), Expect(2) = 1e-73
Identities = 23/27 (85%), Positives = 26/27 (96%)
Frame = +2
Query: 332 QRTVFAYQISLKADEKDVFQFFSRAGK 412
QRTVFAYQI LKADE+DV++FFSRAGK
Sbjct: 218 QRTVFAYQICLKADERDVYEFFSRAGK 244
>emb|CBI37850.3| unnamed protein product [Vitis vinifera]
Length = 427
Score = 253 bits (646), Expect(2) = 1e-73
Identities = 135/164 (82%), Positives = 140/164 (85%), Gaps = 2/164 (1%)
Frame = +3
Query: 477 VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGLPVMVKPSEAEKNLVQST 656
VRDVRLIMDRNSRRSKGVGYIEFYD MSVPMAIALSGQ LLG PVMVKPSEAEKNLVQST
Sbjct: 63 VRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQST 122
Query: 657 TAVV-XXXXXXXXXXXXARRLYVGNLHFNITEDQLRQVFEPFGAVELVQLPLD-ESGHCK 830
TA ARRLYVGNLHFNITEDQLRQVFEPFG VELVQLP D E+GHCK
Sbjct: 123 TAAAGGPGGLIGPYSGGARRLYVGNLHFNITEDQLRQVFEPFGTVELVQLPTDLETGHCK 182
Query: 831 GFGFVQFARLEDARNAQNLNGQLDIAGRTIKVSAVSDQVGMQEI 962
GFGFVQFARLEDAR AQ+LNGQLDIAGRTIKVS V+DQ G+Q+I
Sbjct: 183 GFGFVQFARLEDARAAQSLNGQLDIAGRTIKVSVVTDQAGLQDI 226
Score = 51.2 bits (121), Expect(2) = 1e-73
Identities = 23/27 (85%), Positives = 26/27 (96%)
Frame = +2
Query: 332 QRTVFAYQISLKADEKDVFQFFSRAGK 412
QRTVFAYQI LKADE+DV++FFSRAGK
Sbjct: 36 QRTVFAYQICLKADERDVYEFFSRAGK 62
>ref|XP_003536719.1| PREDICTED: RNA-binding protein 39-like [Glycine max]
Length = 597
Score = 249 bits (635), Expect(2) = 7e-73
Identities = 131/163 (80%), Positives = 140/163 (85%), Gaps = 1/163 (0%)
Frame = +3
Query: 477 VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGLPVMVKPSEAEKNLVQST 656
VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQ LLG PVMVKPSEAEKNLVQST
Sbjct: 249 VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQST 308
Query: 657 TAVVXXXXXXXXXXXX-ARRLYVGNLHFNITEDQLRQVFEPFGAVELVQLPLDESGHCKG 833
T+V AR+LYVGNLH +ITE +R+VFE FG VELVQLPLDESGHCKG
Sbjct: 309 TSVANGLTGLIGPYSGGARKLYVGNLHVSITEADIRRVFEAFGQVELVQLPLDESGHCKG 368
Query: 834 FGFVQFARLEDARNAQNLNGQLDIAGRTIKVSAVSDQVGMQEI 962
FGFVQFARLEDARNAQ+LNGQL+I GRTIKVSAV+DQ GMQE+
Sbjct: 369 FGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEV 411
Score = 53.1 bits (126), Expect(2) = 7e-73
Identities = 24/27 (88%), Positives = 27/27 (100%)
Frame = +2
Query: 332 QRTVFAYQISLKADEKDVFQFFSRAGK 412
QRTVFAYQISLKADE+DV++FFSRAGK
Sbjct: 222 QRTVFAYQISLKADERDVYEFFSRAGK 248
>ref|XP_003555861.1| PREDICTED: RNA-binding protein 39-like [Glycine max]
Length = 600
Score = 248 bits (633), Expect(2) = 2e-72
Identities = 131/162 (80%), Positives = 139/162 (85%), Gaps = 1/162 (0%)
Frame = +3
Query: 477 VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGLPVMVKPSEAEKNLVQST 656
VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQ LLG PVMVKPSEAEKNLVQST
Sbjct: 252 VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQST 311
Query: 657 TAVVXXXXXXXXXXXX-ARRLYVGNLHFNITEDQLRQVFEPFGAVELVQLPLDESGHCKG 833
T+V AR+LYVGNLH +ITE +R+VFE FG VELVQLPLDESGHCKG
Sbjct: 312 TSVANGLTGLIGPYSGGARKLYVGNLHISITEADIRRVFEAFGQVELVQLPLDESGHCKG 371
Query: 834 FGFVQFARLEDARNAQNLNGQLDIAGRTIKVSAVSDQVGMQE 959
FGFVQFARLEDARNAQ+LNGQL+I GRTIKVSAV+DQ GMQE
Sbjct: 372 FGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQE 413
Score = 52.4 bits (124), Expect(2) = 2e-72
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +2
Query: 332 QRTVFAYQISLKADEKDVFQFFSRAGK 412
QR VFAYQISLKADE+DVF+FFSRAGK
Sbjct: 225 QRAVFAYQISLKADERDVFEFFSRAGK 251