BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003258
         (1111 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519025.1| Splicing factor 3B subunit, putative [Ricinu...   369   e-99 
ref|NP_001048592.1| Os02g0827300 [Oryza sativa Japonica Group] g...   367   3e-99
gb|EAY88100.1| hypothetical protein OsI_09533 [Oryza sativa Indi...   367   3e-99
dbj|BAJ93118.1| predicted protein [Hordeum vulgare subsp. vulgare]    367   4e-99
dbj|BAJ91146.1| predicted protein [Hordeum vulgare subsp. vulgare]    367   4e-99

>ref|XP_002519025.1| Splicing factor 3B subunit, putative [Ricinus communis]
           gi|223541688|gb|EEF43236.1| Splicing factor 3B subunit,
           putative [Ricinus communis]
          Length = 590

 Score =  369 bits (946), Expect = e-99
 Identities = 173/194 (89%), Positives = 179/194 (92%)
 Frame = +1

Query: 1   GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLH 180
           GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLH
Sbjct: 226 GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLH 285

Query: 181 DAFFKFQTKPKLTTHGDLYYEGKEFEVKLREMKPGMLSRELKEALGMPEGAPPPWLINMQ 360
           DAFFK+QTKPKLTTHGDLY+EGKEFEVKLREMKPG LS+ELKE+LGMPEGAPPPWLINMQ
Sbjct: 286 DAFFKYQTKPKLTTHGDLYHEGKEFEVKLREMKPGTLSQELKESLGMPEGAPPPWLINMQ 345

Query: 361 RYGPPPSYPHLKIPGLNAPIPLGASFGYHPGGWGKPPVDENGRPLYGDVFGXXXXXXXXX 540
           RYGPPPSYPHLKIPGLNAPIP GASFGYHPGGWGKPPVDE GRPLYGDVFG         
Sbjct: 346 RYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVYQQEQPNY 405

Query: 541 XXXPVDRSKHWGDL 582
              PVD++KHWGDL
Sbjct: 406 EEEPVDKNKHWGDL 419



 Score =  130 bits (326), Expect = 8e-28
 Identities = 67/98 (68%), Positives = 78/98 (79%)
 Frame = +3

Query: 717  DGIQSVDSLSSTPTGVETPDVIDLRKQQRKEPEKPLYQVLEEKEEKIQPGTLLGTTHTYV 896
            DGIQSVDSLSSTPTGVETPDVIDLRKQQRKEPE+PLYQVLEEK E I  GTLLGTTHTYV
Sbjct: 441  DGIQSVDSLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKPEAIGAGTLLGTTHTYV 500

Query: 897  VGSGAQDKAAATKRLQRRMKIAELKQVSSRPDVVEVWD 1010
            VG+G QDK+AA +    R +  +   V+ +P+ ++  D
Sbjct: 501  VGTGTQDKSAAKRVDLLRGQKTDRVDVTLQPEELDAMD 538



 Score =  110 bits (276), Expect = 5e-22
 Identities = 52/59 (88%), Positives = 56/59 (94%)
 Frame = +3

Query: 933  KRLQRRMKIAELKQVSSRPDVVEVWDATAADPKLLVYLKSYRNSVPVPRHWSQKRKFLQ 1109
            K+L RRMKIAELKQ+ SRPDVVEVWDATAADPKLLV+LKSYRN+VPVPRHW QKRKFLQ
Sbjct: 167  KKLLRRMKIAELKQICSRPDVVEVWDATAADPKLLVFLKSYRNTVPVPRHWCQKRKFLQ 225


>ref|NP_001048592.1| Os02g0827300 [Oryza sativa Japonica Group]
           gi|48716448|dbj|BAD23055.1| putative splicing factor 3B
           subunit 2 [Oryza sativa Japonica Group]
           gi|113538123|dbj|BAF10506.1| Os02g0827300 [Oryza sativa
           Japonica Group] gi|125584232|gb|EAZ25163.1| hypothetical
           protein OsJ_08964 [Oryza sativa Japonica Group]
          Length = 582

 Score =  367 bits (942), Expect = 3e-99
 Identities = 174/194 (89%), Positives = 178/194 (91%)
 Frame = +1

Query: 1   GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLH 180
           GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLH
Sbjct: 213 GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLH 272

Query: 181 DAFFKFQTKPKLTTHGDLYYEGKEFEVKLREMKPGMLSRELKEALGMPEGAPPPWLINMQ 360
           DAFFK+QTKPKLT+HGDLYYEGKEFEVKLREMKPGMLSRELKEALGMP+GAPPPWLINMQ
Sbjct: 273 DAFFKYQTKPKLTSHGDLYYEGKEFEVKLREMKPGMLSRELKEALGMPDGAPPPWLINMQ 332

Query: 361 RYGPPPSYPHLKIPGLNAPIPLGASFGYHPGGWGKPPVDENGRPLYGDVFGXXXXXXXXX 540
           RYGPPPSYP LKIPGLNAPIP GASFGY PG WGKPPVDE+GRPLYGDVFG         
Sbjct: 333 RYGPPPSYPQLKIPGLNAPIPPGASFGYRPGEWGKPPVDEHGRPLYGDVFGVLQQDEPNY 392

Query: 541 XXXPVDRSKHWGDL 582
              PVDRSKHWGDL
Sbjct: 393 DEEPVDRSKHWGDL 406



 Score =  111 bits (277), Expect = 4e-22
 Identities = 60/103 (58%), Positives = 69/103 (66%), Gaps = 12/103 (11%)
 Frame = +3

Query: 837  EEKEEKIQPGTLLGTTHTYVVGSGAQDKAAAT------------KRLQRRMKIAELKQVS 980
            E+ E+K + GT          GS + D    T            K+LQRRMKIAELKQ+ 
Sbjct: 113  EDDEKKDEAGT---DAAKKAAGSDSDDDEQGTQQKKEGGLSNKQKKLQRRMKIAELKQIC 169

Query: 981  SRPDVVEVWDATAADPKLLVYLKSYRNSVPVPRHWSQKRKFLQ 1109
            +RPDVVEVWDATA+DP LLVYLKSYRN+VPVPRHW QKRKFLQ
Sbjct: 170  NRPDVVEVWDATASDPSLLVYLKSYRNTVPVPRHWCQKRKFLQ 212



 Score =  106 bits (265), Expect = 9e-21
 Identities = 57/106 (53%), Positives = 76/106 (71%), Gaps = 4/106 (3%)
 Frame = +3

Query: 717  DGIQSVDSLSSTPTGVETPDVIDLRKQQRKEP----EKPLYQVLEEKEEKIQPGTLLGTT 884
            DG+QSVD++SSTPTGVETPDVIDLRK QRKEP    EK LYQ+LE+KEE+I PG + G++
Sbjct: 432  DGMQSVDTISSTPTGVETPDVIDLRKLQRKEPEKQTEKQLYQILEQKEERIAPGAIYGSS 491

Query: 885  HTYVVGSGAQDKAAATKRLQRRMKIAELKQVSSRPDVVEVWDATAA 1022
            HTY +  GAQDKA   +    + + ++   V+ +P+ +EV D   A
Sbjct: 492  HTYAI--GAQDKAGPKRVDLLKNQKSDKVDVTIQPEELEVMDDVLA 535


>gb|EAY88100.1| hypothetical protein OsI_09533 [Oryza sativa Indica Group]
          Length = 581

 Score =  367 bits (942), Expect = 3e-99
 Identities = 174/194 (89%), Positives = 178/194 (91%)
 Frame = +1

Query: 1   GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLH 180
           GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLH
Sbjct: 213 GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLH 272

Query: 181 DAFFKFQTKPKLTTHGDLYYEGKEFEVKLREMKPGMLSRELKEALGMPEGAPPPWLINMQ 360
           DAFFK+QTKPKLT+HGDLYYEGKEFEVKLREMKPGMLSRELKEALGMP+GAPPPWLINMQ
Sbjct: 273 DAFFKYQTKPKLTSHGDLYYEGKEFEVKLREMKPGMLSRELKEALGMPDGAPPPWLINMQ 332

Query: 361 RYGPPPSYPHLKIPGLNAPIPLGASFGYHPGGWGKPPVDENGRPLYGDVFGXXXXXXXXX 540
           RYGPPPSYP LKIPGLNAPIP GASFGY PG WGKPPVDE+GRPLYGDVFG         
Sbjct: 333 RYGPPPSYPQLKIPGLNAPIPPGASFGYRPGEWGKPPVDEHGRPLYGDVFGVLQQDEPNY 392

Query: 541 XXXPVDRSKHWGDL 582
              PVDRSKHWGDL
Sbjct: 393 DEEPVDRSKHWGDL 406



 Score =  111 bits (277), Expect = 4e-22
 Identities = 60/103 (58%), Positives = 69/103 (66%), Gaps = 12/103 (11%)
 Frame = +3

Query: 837  EEKEEKIQPGTLLGTTHTYVVGSGAQDKAAAT------------KRLQRRMKIAELKQVS 980
            E+ E+K + GT          GS + D    T            K+LQRRMKIAELKQ+ 
Sbjct: 113  EDDEKKDEAGT---DAAKKAAGSDSDDDEQGTQQKKEGGLSNKQKKLQRRMKIAELKQIC 169

Query: 981  SRPDVVEVWDATAADPKLLVYLKSYRNSVPVPRHWSQKRKFLQ 1109
            +RPDVVEVWDATA+DP LLVYLKSYRN+VPVPRHW QKRKFLQ
Sbjct: 170  NRPDVVEVWDATASDPSLLVYLKSYRNTVPVPRHWCQKRKFLQ 212



 Score =  106 bits (265), Expect = 9e-21
 Identities = 57/106 (53%), Positives = 76/106 (71%), Gaps = 4/106 (3%)
 Frame = +3

Query: 717  DGIQSVDSLSSTPTGVETPDVIDLRKQQRKEP----EKPLYQVLEEKEEKIQPGTLLGTT 884
            DG+QSVD++SSTPTGVETPDVIDLRK QRKEP    EK LYQ+LE+KEE+I PG + G++
Sbjct: 431  DGMQSVDTISSTPTGVETPDVIDLRKLQRKEPEKQTEKQLYQILEQKEERIAPGAIYGSS 490

Query: 885  HTYVVGSGAQDKAAATKRLQRRMKIAELKQVSSRPDVVEVWDATAA 1022
            HTY +  GAQDKA   +    + + ++   V+ +P+ +EV D   A
Sbjct: 491  HTYAI--GAQDKAGPKRVDLLKNQKSDKVDVTIQPEELEVMDDVLA 534


>dbj|BAJ93118.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 435

 Score =  367 bits (941), Expect = 4e-99
 Identities = 174/194 (89%), Positives = 178/194 (91%)
 Frame = +1

Query: 1   GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLH 180
           GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLH
Sbjct: 65  GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLH 124

Query: 181 DAFFKFQTKPKLTTHGDLYYEGKEFEVKLREMKPGMLSRELKEALGMPEGAPPPWLINMQ 360
           DAFFK+QTKPKLT+HGDLYYEGKEFEVKLREMKPGMLSRELKEALGMPEGAPPPWLINMQ
Sbjct: 125 DAFFKYQTKPKLTSHGDLYYEGKEFEVKLREMKPGMLSRELKEALGMPEGAPPPWLINMQ 184

Query: 361 RYGPPPSYPHLKIPGLNAPIPLGASFGYHPGGWGKPPVDENGRPLYGDVFGXXXXXXXXX 540
           RYGPPPSYP LKIPGLNAPIP GA+FGY PG WGKPPVDE+GRPLYGDVFG         
Sbjct: 185 RYGPPPSYPSLKIPGLNAPIPPGATFGYRPGEWGKPPVDEHGRPLYGDVFGILQLDEPNY 244

Query: 541 XXXPVDRSKHWGDL 582
              PVDRSKHWGDL
Sbjct: 245 DEEPVDRSKHWGDL 258



 Score =  112 bits (279), Expect = 2e-22
 Identities = 62/105 (59%), Positives = 77/105 (73%), Gaps = 4/105 (3%)
 Frame = +3

Query: 720  GIQSVDSLSSTPTGVETPDVIDLRKQQRKEPEKP----LYQVLEEKEEKIQPGTLLGTTH 887
            G+QSVD++SSTPTGVETPDVIDLRKQQRKE E+P    LYQVLE+KEEKI PGTL G++H
Sbjct: 285  GMQSVDTMSSTPTGVETPDVIDLRKQQRKESERPTDKQLYQVLEQKEEKIAPGTLYGSSH 344

Query: 888  TYVVGSGAQDKAAATKRLQRRMKIAELKQVSSRPDVVEVWDATAA 1022
            TYVV  GAQDKA   +    + + ++   V+  P+ +EV D   A
Sbjct: 345  TYVV--GAQDKAGVKRVDLLKNQKSDKVDVTIHPEELEVMDDVLA 387


>dbj|BAJ91146.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 581

 Score =  367 bits (941), Expect = 4e-99
 Identities = 174/194 (89%), Positives = 178/194 (91%)
 Frame = +1

Query: 1   GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLH 180
           GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLH
Sbjct: 211 GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLH 270

Query: 181 DAFFKFQTKPKLTTHGDLYYEGKEFEVKLREMKPGMLSRELKEALGMPEGAPPPWLINMQ 360
           DAFFK+QTKPKLT+HGDLYYEGKEFEVKLREMKPGMLSRELKEALGMPEGAPPPWLINMQ
Sbjct: 271 DAFFKYQTKPKLTSHGDLYYEGKEFEVKLREMKPGMLSRELKEALGMPEGAPPPWLINMQ 330

Query: 361 RYGPPPSYPHLKIPGLNAPIPLGASFGYHPGGWGKPPVDENGRPLYGDVFGXXXXXXXXX 540
           RYGPPPSYP LKIPGLNAPIP GA+FGY PG WGKPPVDE+GRPLYGDVFG         
Sbjct: 331 RYGPPPSYPSLKIPGLNAPIPPGATFGYRPGEWGKPPVDEHGRPLYGDVFGILQLDEPNY 390

Query: 541 XXXPVDRSKHWGDL 582
              PVDRSKHWGDL
Sbjct: 391 DEEPVDRSKHWGDL 404



 Score =  112 bits (279), Expect = 2e-22
 Identities = 51/59 (86%), Positives = 58/59 (98%)
 Frame = +3

Query: 933  KRLQRRMKIAELKQVSSRPDVVEVWDATAADPKLLVYLKSYRNSVPVPRHWSQKRKFLQ 1109
            K+L++RMKIAELKQ+ +RPDVVEVWDATA+DPKLLVYLKSYRN+VPVPRHWSQKRKFLQ
Sbjct: 152  KKLEQRMKIAELKQICNRPDVVEVWDATASDPKLLVYLKSYRNTVPVPRHWSQKRKFLQ 210



 Score =  112 bits (279), Expect = 2e-22
 Identities = 62/105 (59%), Positives = 77/105 (73%), Gaps = 4/105 (3%)
 Frame = +3

Query: 720  GIQSVDSLSSTPTGVETPDVIDLRKQQRKEPEKP----LYQVLEEKEEKIQPGTLLGTTH 887
            G+QSVD++SSTPTGVETPDVIDLRKQQRKE E+P    LYQVLE+KEEKI PGTL G++H
Sbjct: 431  GMQSVDTMSSTPTGVETPDVIDLRKQQRKESERPTDKQLYQVLEQKEEKIAPGTLYGSSH 490

Query: 888  TYVVGSGAQDKAAATKRLQRRMKIAELKQVSSRPDVVEVWDATAA 1022
            TYVV  GAQDKA   +    + + ++   V+  P+ +EV D   A
Sbjct: 491  TYVV--GAQDKAGVKRVDLLKNQKSDKVDVTIHPEELEVMDDVLA 533