BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002977
         (1436 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279994.1| PREDICTED: pentatricopeptide repeat-containi...   182   6e-58
emb|CBI37720.3| unnamed protein product [Vitis vinifera]              182   2e-56
ref|XP_002514404.1| conserved hypothetical protein [Ricinus comm...   172   4e-49
ref|XP_004144958.1| PREDICTED: pentatricopeptide repeat-containi...   156   9e-46
ref|NP_196494.1| Vacuolar sorting protein 9 (VPS9) domain protei...   157   3e-43

>ref|XP_002279994.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
            [Vitis vinifera]
          Length = 246

 Score =  182 bits (461), Expect(2) = 6e-58
 Identities = 92/163 (56%), Positives = 121/163 (74%)
 Frame = -3

Query: 1038 EQVFESKVRRLLKFDMLAVLRELLRQNEALLALQVFKDVRKEYWYKPQVLVYADMIKMFA 859
            E+VFESKVRRLLK DM+AVL++LL QNE LLAL+VF DVRKEYWYKPQV +YA+MI++  
Sbjct: 77   ERVFESKVRRLLKLDMIAVLKQLLNQNECLLALKVFDDVRKEYWYKPQVSLYAEMIRVLG 136

Query: 858  SNDFXXXXXXXXXXXKMERYHLDADTEGFNALFRTLMNYGFTTSAMDCFQFMKEVQCDPN 679
            SN             K E   L+ +TEGFNAL RTL+++  T  AM+CFQ MK   C+PN
Sbjct: 137  SNGLFEQVHLLLSYLKKET-GLELETEGFNALLRTLIDFDMTGPAMECFQLMKTSGCEPN 195

Query: 678  ESTFKILVSGLESKGETGLSSMLRQEAEKYFGWPLEYQEEEKE 550
            +S+F+IL+ GLESKGE  +S+ ++ +A+KYFG  LE+ EEE++
Sbjct: 196  KSSFRILIKGLESKGELDISATVKLDAQKYFGESLEFLEEEED 238



 Score = 70.5 bits (171), Expect(2) = 6e-58
 Identities = 37/52 (71%), Positives = 44/52 (84%), Gaps = 1/52 (1%)
 Frame = -1

Query: 1262 RGIIT-NARNTGQSRKQLQRGRNLSIEAIQTVQALKRAKKDDNMVEQVFESK 1110
            RGI T N R+  Q+RK LQRGRNLSIEAIQ VQALKRAK+D++ +E+VFESK
Sbjct: 32   RGIFTINMRDRSQNRKPLQRGRNLSIEAIQAVQALKRAKRDESSLERVFESK 83


>emb|CBI37720.3| unnamed protein product [Vitis vinifera]
          Length = 208

 Score =  182 bits (461), Expect(2) = 2e-56
 Identities = 92/163 (56%), Positives = 121/163 (74%)
 Frame = -3

Query: 1038 EQVFESKVRRLLKFDMLAVLRELLRQNEALLALQVFKDVRKEYWYKPQVLVYADMIKMFA 859
            E+VFESKVRRLLK DM+AVL++LL QNE LLAL+VF DVRKEYWYKPQV +YA+MI++  
Sbjct: 39   ERVFESKVRRLLKLDMIAVLKQLLNQNECLLALKVFDDVRKEYWYKPQVSLYAEMIRVLG 98

Query: 858  SNDFXXXXXXXXXXXKMERYHLDADTEGFNALFRTLMNYGFTTSAMDCFQFMKEVQCDPN 679
            SN             K E   L+ +TEGFNAL RTL+++  T  AM+CFQ MK   C+PN
Sbjct: 99   SNGLFEQVHLLLSYLKKET-GLELETEGFNALLRTLIDFDMTGPAMECFQLMKTSGCEPN 157

Query: 678  ESTFKILVSGLESKGETGLSSMLRQEAEKYFGWPLEYQEEEKE 550
            +S+F+IL+ GLESKGE  +S+ ++ +A+KYFG  LE+ EEE++
Sbjct: 158  KSSFRILIKGLESKGELDISATVKLDAQKYFGESLEFLEEEED 200



 Score = 65.5 bits (158), Expect(2) = 2e-56
 Identities = 32/44 (72%), Positives = 39/44 (88%)
 Frame = -1

Query: 1241 RNTGQSRKQLQRGRNLSIEAIQTVQALKRAKKDDNMVEQVFESK 1110
            R+  Q+RK LQRGRNLSIEAIQ VQALKRAK+D++ +E+VFESK
Sbjct: 2    RDRSQNRKPLQRGRNLSIEAIQAVQALKRAKRDESSLERVFESK 45


>ref|XP_002514404.1| conserved hypothetical protein [Ricinus communis]
            gi|223546501|gb|EEF48000.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 248

 Score =  172 bits (437), Expect(2) = 4e-49
 Identities = 86/164 (52%), Positives = 116/164 (70%)
 Frame = -3

Query: 1038 EQVFESKVRRLLKFDMLAVLRELLRQNEALLALQVFKDVRKEYWYKPQVLVYADMIKMFA 859
            + VF SK  RLLK DML+VLRELLRQN  LLAL+VFKD+RKEYWYKPQV +Y DMIK  A
Sbjct: 84   DSVFRSKFSRLLKLDMLSVLRELLRQNHCLLALKVFKDIRKEYWYKPQVSLYDDMIKAMA 143

Query: 858  SNDFXXXXXXXXXXXKMERYHLDADTEGFNALFRTLMNYGFTTSAMDCFQFMKEVQCDPN 679
            SN +           K E   ++ +T+ FNALF TL+ +  +  AM+ +  MK V+C+P+
Sbjct: 144  SNGYFEQVELLCIYLKTETNLIEPETDAFNALFTTLITFNLSGFAMEFYGLMKAVKCEPD 203

Query: 678  ESTFKILVSGLESKGETGLSSMLRQEAEKYFGWPLEYQEEEKEE 547
              TF+IL++GLES GE+  S++LRQ+A K++G  LE+ EEE++E
Sbjct: 204  RLTFRILINGLESMGESSASAILRQDAHKFYGQSLEFLEEEEDE 247



 Score = 50.1 bits (118), Expect(2) = 4e-49
 Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
 Frame = -1

Query: 1256 IITNARNTGQSRKQLQRGRNLSIEAIQTVQALKRAK--KDDNMVEQVFESK 1110
            ++ NA+    +RKQLQ+GRNLSIE+IQ VQ+LKRA     ++ ++ VF SK
Sbjct: 40   MVVNAKGKEDNRKQLQKGRNLSIESIQAVQSLKRAYYFSTNSNLDSVFRSK 90


>ref|XP_004144958.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like
            [Cucumis sativus] gi|449473007|ref|XP_004153757.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At3g46870-like [Cucumis sativus]
            gi|449517150|ref|XP_004165609.1| PREDICTED:
            pentatricopeptide repeat-containing protein
            At3g46870-like [Cucumis sativus]
          Length = 249

 Score =  156 bits (395), Expect(2) = 9e-46
 Identities = 80/163 (49%), Positives = 116/163 (71%)
 Frame = -3

Query: 1038 EQVFESKVRRLLKFDMLAVLRELLRQNEALLALQVFKDVRKEYWYKPQVLVYADMIKMFA 859
            ++V++SK+RRLLKFDMLAVLRELLRQNE  LAL+VF+DVRKE+WYKPQV +YAD+I + A
Sbjct: 80   DRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRKEHWYKPQVSLYADIITVLA 139

Query: 858  SNDFXXXXXXXXXXXKMERYHLDADTEGFNALFRTLMNYGFTTSAMDCFQFMKEVQCDPN 679
            SN             K E   L  + +GFNAL + L+++     AM+ +  MK+V C+P+
Sbjct: 140  SNGLFERVQIILSYMKAEA-DLAPEIDGFNALLKALVSHNLGELAMESYYLMKDVGCEPD 198

Query: 678  ESTFKILVSGLESKGETGLSSMLRQEAEKYFGWPLEYQEEEKE 550
            +++F+I++ GLESKGE      ++Q+A++ +G  LE+ EEE+E
Sbjct: 199  KASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEEE 241



 Score = 55.1 bits (131), Expect(2) = 9e-46
 Identities = 26/44 (59%), Positives = 35/44 (79%)
 Frame = -1

Query: 1241 RNTGQSRKQLQRGRNLSIEAIQTVQALKRAKKDDNMVEQVFESK 1110
            R   ++RK LQ+GRNLSIEAIQ VQ+LKR KKD   +++V++SK
Sbjct: 43   RGGSENRKPLQKGRNLSIEAIQAVQSLKRTKKDLQQLDRVYDSK 86


>ref|NP_196494.1| Vacuolar sorting protein 9 (VPS9) domain protein [Arabidopsis
            thaliana] gi|9955519|emb|CAC05458.1| putative protein
            [Arabidopsis thaliana] gi|332003991|gb|AED91374.1|
            Vacuolar sorting protein 9 (VPS9) domain protein
            [Arabidopsis thaliana]
          Length = 712

 Score =  157 bits (397), Expect(2) = 3e-43
 Identities = 81/163 (49%), Positives = 112/163 (68%)
 Frame = -3

Query: 1038 EQVFESKVRRLLKFDMLAVLRELLRQNEALLALQVFKDVRKEYWYKPQVLVYADMIKMFA 859
            ++V  SK RRLLKFDM+AVLRELLRQNE  LAL+VF+++RKEYWYKPQV +Y DMI + A
Sbjct: 542  DRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMA 601

Query: 858  SNDFXXXXXXXXXXXKMERYHLDADTEGFNALFRTLMNYGFTTSAMDCFQFMKEVQCDPN 679
             N             K E+  L A+ E FN L   L+N+      MDC+ FM+ +  +P+
Sbjct: 602  DNSLMEEVNYLYSAMKSEK-GLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPD 660

Query: 678  ESTFKILVSGLESKGETGLSSMLRQEAEKYFGWPLEYQEEEKE 550
             ++F++LV GLES GE GLS+++RQ+A +Y+G  LE+ EE++E
Sbjct: 661  RASFRVLVLGLESNGEMGLSAIVRQDAHEYYGESLEFIEEDEE 703



 Score = 45.8 bits (107), Expect(2) = 3e-43
 Identities = 23/37 (62%), Positives = 28/37 (75%)
 Frame = -1

Query: 1262 RGIITNARNTGQSRKQLQRGRNLSIEAIQTVQALKRA 1152
            R ++   R+  ++RK LQRGR LSIEAIQ VQALKRA
Sbjct: 483  RAMVIKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRA 519