BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002966
         (1601 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD63131.1| Retrotransposon gag protein [Asparagus officinalis]    281   5e-73
gb|ABD63157.1| Retrotransposon gag protein [Asparagus officinalis]    256   9e-66
emb|CAN66226.1| hypothetical protein VITISV_006069 [Vitis vinifera]   228   3e-57
emb|CAN60440.1| hypothetical protein VITISV_032287 [Vitis vinifera]   227   8e-57
gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]    226   1e-56

>gb|ABD63131.1| Retrotransposon gag protein [Asparagus officinalis]
          Length = 321

 Score =  281 bits (718), Expect = 5e-73
 Identities = 126/279 (45%), Positives = 190/279 (68%)
 Frame = +2

Query: 389  IKEFIYPARTTRPSCIVPPPTNANHFELKPNLLGLLPKFRGTDEEDPYLHVREFEDICGT 568
            +++  YP R   PSCI  P  N  +FEL+P+ + +LPKF G + ED Y+ + EFE++C  
Sbjct: 7    LQDMCYPTRNAIPSCIRLPEVNGANFELRPHFINMLPKFLGNETEDAYIFISEFEEVCIM 66

Query: 569  VKLQQFSDEAIKLKLFPFSLKEKAKSWFHTLPSNSITTWERLCIVFLKNFFPNHKATAFR 748
            +K+++ +++AIKL+  PF+LK+KAK W ++LP+NSI+TWE    VFLK FFP HK    R
Sbjct: 67   IKMRELTEDAIKLRFIPFALKDKAKKWLYSLPTNSISTWEEFVTVFLKKFFPIHKTVKLR 126

Query: 749  KNLSSFCQADGESLWKCMERFKDLLLQCPNHGLEKGRLIQILYEGLDFSSKAMIETMSTG 928
             ++ +F    GE  WK  +RFKDLL+QCP+HGLEK RL Q++YEGLD+SSK  +E+M  G
Sbjct: 127  NSIQNFKIVPGEPFWKYFDRFKDLLIQCPHHGLEKWRLCQVIYEGLDYSSKTSLESMCQG 186

Query: 929  DFCDKTVDDAWSFLEDVAEKVQQWETSREPKKVASSTTKNAMFHVDKDFDANAKIAALVR 1108
            DF  K  D+AW FLE ++EK  QWE   + +  + S +K++   ++ +  + AK+A ++R
Sbjct: 187  DFMRKNADEAWEFLESLSEKTMQWENC-DDRVSSVSQSKSSGLSLESNIASEAKMATILR 245

Query: 1109 RVEALELEKETKSQAQVNNVETPGCLLCDSLDHVIDNCP 1225
            R+EALE+++  ++ AQ+N++  PGC  C S  HV + CP
Sbjct: 246  RLEALEVKE--RAPAQINHISAPGCHNCQSPTHVSEECP 282


>gb|ABD63157.1| Retrotransposon gag protein [Asparagus officinalis]
          Length = 279

 Score =  256 bits (655), Expect = 9e-66
 Identities = 119/273 (43%), Positives = 179/273 (65%)
 Frame = +2

Query: 380  PRSIKEFIYPARTTRPSCIVPPPTNANHFELKPNLLGLLPKFRGTDEEDPYLHVREFEDI 559
            P  + +  YP R   PSCI  P TN   FEL+P  + +LPKF G   ED Y+ + EFE++
Sbjct: 6    PPVLHDMCYPIRNAIPSCIRLPETNGISFELRPQYINMLPKFLGNKTEDAYIFISEFEEV 65

Query: 560  CGTVKLQQFSDEAIKLKLFPFSLKEKAKSWFHTLPSNSITTWERLCIVFLKNFFPNHKAT 739
            C  +K+++ +++A+KL+  PF+LK+KAK W ++LP+NSI+TW+    VFLK  FP HK  
Sbjct: 66   CIMIKMRELNEDAVKLRFIPFALKDKAKKWLYSLPTNSISTWDEFVTVFLKKIFPIHKTV 125

Query: 740  AFRKNLSSFCQADGESLWKCMERFKDLLLQCPNHGLEKGRLIQILYEGLDFSSKAMIETM 919
              R ++ +F    GE  WK  +RFKDLL+QCP+HGLEK RL QI+YEGLD+S+K  +E+M
Sbjct: 126  KLRNSIQNFKIIPGEPFWKYFDRFKDLLIQCPHHGLEKWRLCQIIYEGLDYSAKTSLESM 185

Query: 920  STGDFCDKTVDDAWSFLEDVAEKVQQWETSREPKKVASSTTKNAMFHVDKDFDANAKIAA 1099
              GDF  K  D+AW FLE ++EK+ QWE   +    +   +K++   ++ +  + AK+A 
Sbjct: 186  CHGDFMRKNADEAWEFLESLSEKIMQWEHC-DDMVSSIPQSKSSGLSLESNIASEAKMAT 244

Query: 1100 LVRRVEALELEKETKSQAQVNNVETPGCLLCDS 1198
            ++RR+EALE+++  ++ AQ+N+V    C  C S
Sbjct: 245  ILRRLEALEIKE--RALAQINHVSASRCHNCQS 275


>emb|CAN66226.1| hypothetical protein VITISV_006069 [Vitis vinifera]
          Length = 868

 Score =  228 bits (581), Expect = 3e-57
 Identities = 126/362 (34%), Positives = 193/362 (53%), Gaps = 17/362 (4%)
 Frame = +2

Query: 293  ELEIPITFVGNTP----IFVDMADNNNDIVAQVPRSIKEFIYPARTTRPSCIVPPPTNAN 460
            ELE+ +  +  TP       D  DN N+      RS+++ ++P R + PSCIVPP     
Sbjct: 494  ELEVILNIMETTPEDQHSHHDHQDNPNEF-----RSMRDHMHPPRMSAPSCIVPP---TE 545

Query: 461  HFELKPNLLGLLPKFRGTDEEDPYLHVREFEDICGTVKLQQFSDEAIKLKLFPFSLKEKA 640
               + P+++ LLP F G + E+PY H++EFED+C T + +  S + ++LKLFPF+LK+KA
Sbjct: 546  QLVIIPHIVPLLPTFHGMESENPYAHIKEFEDVCNTFRERGASIDLMRLKLFPFTLKDKA 605

Query: 641  KSWFHTLPSNSITTWERLCIVFLKNFFPNHKATAFRKNLSSFCQADGESLWKCMERFKDL 820
            K W ++L   SI TW  L   F+K FFP HK    ++ +S+F   + E  ++C ER+ + 
Sbjct: 606  KIWLNSLRPRSIRTWTNLQAEFVKKFFPTHKTNGLKRQISNFSAKENEKFYECWERYMEA 665

Query: 821  LLQCPNHGLEKGRLIQILYEGLDFSSKAMIETMSTGDFCDKTVDDAWSFLEDVAEKVQQW 1000
            +  CP+HG +   L+   Y+G+  S K ++ETM  GDF  K  ++A  FL  VAE  + W
Sbjct: 666  INACPHHGFDTWMLVSYFYDGMSSSMKQLLETMCGGDFMSKNPEEAMDFLSYVAEVSRGW 725

Query: 1001 ET--SREPKKVASST----TKNAMFHVDKDFDANAKIAALVRRVEALELEKETKSQAQV- 1159
            +    RE  K+ S       K  M+ +++D D  AK AA+ RRVE LEL+K  + QA   
Sbjct: 726  DEPHRREVGKMKSQPNALHVKAGMYTLNEDVDKKAKFAAMTRRVEELELKKMHEVQAVAE 785

Query: 1160 NNVETPGCLLCDSLDHVIDNCPGVTAQVNAFNTYQXXXXXXXXXXXXXQG------WRNN 1321
             +V+   C +  S +H+++ CP +      F                  G      WRN+
Sbjct: 786  TSVQVKPCSIFQSYEHLVEECPTIPVAREMFGEQANVIGQFKPNSNASYGNTYNSSWRNH 845

Query: 1322 PN 1327
            PN
Sbjct: 846  PN 847


>emb|CAN60440.1| hypothetical protein VITISV_032287 [Vitis vinifera]
          Length = 893

 Score =  227 bits (578), Expect = 8e-57
 Identities = 113/326 (34%), Positives = 186/326 (57%), Gaps = 11/326 (3%)
 Frame = +2

Query: 383  RSIKEFIYPARTTRPSCIVPPPTNANHFELKPNLLGLLPKFRGTDEEDPYLHVREFEDIC 562
            RS+++ ++P R + PSCI+PP        ++P+++ LLP F G + E+PY H++EFED+C
Sbjct: 507  RSMRDRMHPPRMSAPSCIIPP---TEKLIIRPHIVPLLPTFHGMESENPYAHIKEFEDVC 563

Query: 563  GTVKLQQFSDEAIKLKLFPFSLKEKAKSWFHTLPSNSITTWERLCIVFLKNFFPNHKATA 742
             T +    + E ++LKLFPF+LK+KAK W ++L   SI TW  L   FLK FFP H+   
Sbjct: 564  NTFQEGGTAIELMRLKLFPFTLKDKAKIWLNSLRPRSIRTWTELQADFLKKFFPTHRTNG 623

Query: 743  FRKNLSSFCQADGESLWKCMERFKDLLLQCPNHGLEKGRLIQILYEGLDFSSKAMIETMS 922
             ++ +S+F   + E  ++C ER+ + +  CP+HG +   L+   Y+G+  S K ++ETM 
Sbjct: 624  LKRQISNFSARENEKFYECWERYMEAINACPHHGFDTWLLVSYFYDGMSSSMKQILETMC 683

Query: 923  TGDFCDKTVDDAWSFLEDVAEKVQQWE--TSRE-PKKVASSTTKNAMFHVDKDFDANAKI 1093
             GDF  K  ++A  FL  V+E  + W+  T+RE  K+     +K  M+++++D +  AK+
Sbjct: 684  GGDFMSKNPEEAMDFLSYVSEVSRGWDEPTNREMGKRPVQQMSKGGMYNLNEDMEMKAKV 743

Query: 1094 AALVRRVEALELEKETKSQAQVNNVETPG--CLLCDSLDHVIDNCPGVTAQVNAFNTYQX 1267
            AA+ R++E +EL K  + QA ++  + P   C +C S +H+++ CP + A    F     
Sbjct: 744  AAMARKIEEMELRKVHEVQA-ISEPQQPANPCSICQSFEHMVEECPTIPAVREMFGEQAN 802

Query: 1268 XXXXXXXXXXXXQG------WRNNPN 1327
                         G      WRN+PN
Sbjct: 803  LIGQWKPNSNAPYGNTYNSSWRNHPN 828


>gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]
          Length = 1788

 Score =  226 bits (576), Expect = 1e-56
 Identities = 108/253 (42%), Positives = 160/253 (63%), Gaps = 2/253 (0%)
 Frame = +2

Query: 575  LQQFSDEAIKLKLFPFSLKEKAKSWFHTLPSNSITTWERLCIVFLKNFFPNHKATAFRKN 754
            +++ +++AIKL+  PF+LK+KAK W ++LP+NSI+TWE    VFLK FFP HK    R +
Sbjct: 1    MRELTEDAIKLRFIPFALKDKAKKWLYSLPTNSISTWEEFVTVFLKKFFPIHKTVKLRNS 60

Query: 755  LSSFCQADGESLWKCMERFKDLLLQCPNHGLEKGRLIQILYEGLDFSSKAMIETMSTGDF 934
            + +F    GE  WK  +RFKDLL+QCP+HGLEK RL Q++YEGLD+SSK  +E+M  GDF
Sbjct: 61   IQNFKIVPGEPFWKYFDRFKDLLIQCPHHGLEKWRLCQVIYEGLDYSSKTSLESMCQGDF 120

Query: 935  CDKTVDDAWSFLEDVAEKVQQWETSREPKKVASSTTKNAMFHVDKDFDANAKIAALVRRV 1114
              K  D+AW FLE ++EK  QWE   + +  + S +K++   ++ +  + AK+A ++RR+
Sbjct: 121  MRKNADEAWEFLESLSEKTMQWENC-DDRVSSVSQSKSSGLSLESNIASEAKMATILRRL 179

Query: 1115 EALELEKETKSQAQVNNVETPGCLLCDSLDHVIDNCP--GVTAQVNAFNTYQXXXXXXXX 1288
            EALE+++  ++ AQ+N++  PGC  C S  HV + CP  G    +   N           
Sbjct: 180  EALEVKE--RAPAQINHISAPGCHNCQSPTHVSEECPLLGNNHALEQMNAAFQRPRNDPF 237

Query: 1289 XXXXXQGWRNNPN 1327
                  GWRN+PN
Sbjct: 238  SPTYNPGWRNHPN 250