BLASTX nr result
ID: Coptis24_contig00002966
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00002966 (1601 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABD63131.1| Retrotransposon gag protein [Asparagus officinalis] 281 5e-73 gb|ABD63157.1| Retrotransposon gag protein [Asparagus officinalis] 256 9e-66 emb|CAN66226.1| hypothetical protein VITISV_006069 [Vitis vinifera] 228 3e-57 emb|CAN60440.1| hypothetical protein VITISV_032287 [Vitis vinifera] 227 8e-57 gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis] 226 1e-56 >gb|ABD63131.1| Retrotransposon gag protein [Asparagus officinalis] Length = 321 Score = 281 bits (718), Expect = 5e-73 Identities = 126/279 (45%), Positives = 190/279 (68%) Frame = +2 Query: 389 IKEFIYPARTTRPSCIVPPPTNANHFELKPNLLGLLPKFRGTDEEDPYLHVREFEDICGT 568 +++ YP R PSCI P N +FEL+P+ + +LPKF G + ED Y+ + EFE++C Sbjct: 7 LQDMCYPTRNAIPSCIRLPEVNGANFELRPHFINMLPKFLGNETEDAYIFISEFEEVCIM 66 Query: 569 VKLQQFSDEAIKLKLFPFSLKEKAKSWFHTLPSNSITTWERLCIVFLKNFFPNHKATAFR 748 +K+++ +++AIKL+ PF+LK+KAK W ++LP+NSI+TWE VFLK FFP HK R Sbjct: 67 IKMRELTEDAIKLRFIPFALKDKAKKWLYSLPTNSISTWEEFVTVFLKKFFPIHKTVKLR 126 Query: 749 KNLSSFCQADGESLWKCMERFKDLLLQCPNHGLEKGRLIQILYEGLDFSSKAMIETMSTG 928 ++ +F GE WK +RFKDLL+QCP+HGLEK RL Q++YEGLD+SSK +E+M G Sbjct: 127 NSIQNFKIVPGEPFWKYFDRFKDLLIQCPHHGLEKWRLCQVIYEGLDYSSKTSLESMCQG 186 Query: 929 DFCDKTVDDAWSFLEDVAEKVQQWETSREPKKVASSTTKNAMFHVDKDFDANAKIAALVR 1108 DF K D+AW FLE ++EK QWE + + + S +K++ ++ + + AK+A ++R Sbjct: 187 DFMRKNADEAWEFLESLSEKTMQWENC-DDRVSSVSQSKSSGLSLESNIASEAKMATILR 245 Query: 1109 RVEALELEKETKSQAQVNNVETPGCLLCDSLDHVIDNCP 1225 R+EALE+++ ++ AQ+N++ PGC C S HV + CP Sbjct: 246 RLEALEVKE--RAPAQINHISAPGCHNCQSPTHVSEECP 282 >gb|ABD63157.1| Retrotransposon gag protein [Asparagus officinalis] Length = 279 Score = 256 bits (655), Expect = 9e-66 Identities = 119/273 (43%), Positives = 179/273 (65%) Frame = +2 Query: 380 PRSIKEFIYPARTTRPSCIVPPPTNANHFELKPNLLGLLPKFRGTDEEDPYLHVREFEDI 559 P + + YP R PSCI P TN FEL+P + +LPKF G ED Y+ + EFE++ Sbjct: 6 PPVLHDMCYPIRNAIPSCIRLPETNGISFELRPQYINMLPKFLGNKTEDAYIFISEFEEV 65 Query: 560 CGTVKLQQFSDEAIKLKLFPFSLKEKAKSWFHTLPSNSITTWERLCIVFLKNFFPNHKAT 739 C +K+++ +++A+KL+ PF+LK+KAK W ++LP+NSI+TW+ VFLK FP HK Sbjct: 66 CIMIKMRELNEDAVKLRFIPFALKDKAKKWLYSLPTNSISTWDEFVTVFLKKIFPIHKTV 125 Query: 740 AFRKNLSSFCQADGESLWKCMERFKDLLLQCPNHGLEKGRLIQILYEGLDFSSKAMIETM 919 R ++ +F GE WK +RFKDLL+QCP+HGLEK RL QI+YEGLD+S+K +E+M Sbjct: 126 KLRNSIQNFKIIPGEPFWKYFDRFKDLLIQCPHHGLEKWRLCQIIYEGLDYSAKTSLESM 185 Query: 920 STGDFCDKTVDDAWSFLEDVAEKVQQWETSREPKKVASSTTKNAMFHVDKDFDANAKIAA 1099 GDF K D+AW FLE ++EK+ QWE + + +K++ ++ + + AK+A Sbjct: 186 CHGDFMRKNADEAWEFLESLSEKIMQWEHC-DDMVSSIPQSKSSGLSLESNIASEAKMAT 244 Query: 1100 LVRRVEALELEKETKSQAQVNNVETPGCLLCDS 1198 ++RR+EALE+++ ++ AQ+N+V C C S Sbjct: 245 ILRRLEALEIKE--RALAQINHVSASRCHNCQS 275 >emb|CAN66226.1| hypothetical protein VITISV_006069 [Vitis vinifera] Length = 868 Score = 228 bits (581), Expect = 3e-57 Identities = 126/362 (34%), Positives = 193/362 (53%), Gaps = 17/362 (4%) Frame = +2 Query: 293 ELEIPITFVGNTP----IFVDMADNNNDIVAQVPRSIKEFIYPARTTRPSCIVPPPTNAN 460 ELE+ + + TP D DN N+ RS+++ ++P R + PSCIVPP Sbjct: 494 ELEVILNIMETTPEDQHSHHDHQDNPNEF-----RSMRDHMHPPRMSAPSCIVPP---TE 545 Query: 461 HFELKPNLLGLLPKFRGTDEEDPYLHVREFEDICGTVKLQQFSDEAIKLKLFPFSLKEKA 640 + P+++ LLP F G + E+PY H++EFED+C T + + S + ++LKLFPF+LK+KA Sbjct: 546 QLVIIPHIVPLLPTFHGMESENPYAHIKEFEDVCNTFRERGASIDLMRLKLFPFTLKDKA 605 Query: 641 KSWFHTLPSNSITTWERLCIVFLKNFFPNHKATAFRKNLSSFCQADGESLWKCMERFKDL 820 K W ++L SI TW L F+K FFP HK ++ +S+F + E ++C ER+ + Sbjct: 606 KIWLNSLRPRSIRTWTNLQAEFVKKFFPTHKTNGLKRQISNFSAKENEKFYECWERYMEA 665 Query: 821 LLQCPNHGLEKGRLIQILYEGLDFSSKAMIETMSTGDFCDKTVDDAWSFLEDVAEKVQQW 1000 + CP+HG + L+ Y+G+ S K ++ETM GDF K ++A FL VAE + W Sbjct: 666 INACPHHGFDTWMLVSYFYDGMSSSMKQLLETMCGGDFMSKNPEEAMDFLSYVAEVSRGW 725 Query: 1001 ET--SREPKKVASST----TKNAMFHVDKDFDANAKIAALVRRVEALELEKETKSQAQV- 1159 + RE K+ S K M+ +++D D AK AA+ RRVE LEL+K + QA Sbjct: 726 DEPHRREVGKMKSQPNALHVKAGMYTLNEDVDKKAKFAAMTRRVEELELKKMHEVQAVAE 785 Query: 1160 NNVETPGCLLCDSLDHVIDNCPGVTAQVNAFNTYQXXXXXXXXXXXXXQG------WRNN 1321 +V+ C + S +H+++ CP + F G WRN+ Sbjct: 786 TSVQVKPCSIFQSYEHLVEECPTIPVAREMFGEQANVIGQFKPNSNASYGNTYNSSWRNH 845 Query: 1322 PN 1327 PN Sbjct: 846 PN 847 >emb|CAN60440.1| hypothetical protein VITISV_032287 [Vitis vinifera] Length = 893 Score = 227 bits (578), Expect = 8e-57 Identities = 113/326 (34%), Positives = 186/326 (57%), Gaps = 11/326 (3%) Frame = +2 Query: 383 RSIKEFIYPARTTRPSCIVPPPTNANHFELKPNLLGLLPKFRGTDEEDPYLHVREFEDIC 562 RS+++ ++P R + PSCI+PP ++P+++ LLP F G + E+PY H++EFED+C Sbjct: 507 RSMRDRMHPPRMSAPSCIIPP---TEKLIIRPHIVPLLPTFHGMESENPYAHIKEFEDVC 563 Query: 563 GTVKLQQFSDEAIKLKLFPFSLKEKAKSWFHTLPSNSITTWERLCIVFLKNFFPNHKATA 742 T + + E ++LKLFPF+LK+KAK W ++L SI TW L FLK FFP H+ Sbjct: 564 NTFQEGGTAIELMRLKLFPFTLKDKAKIWLNSLRPRSIRTWTELQADFLKKFFPTHRTNG 623 Query: 743 FRKNLSSFCQADGESLWKCMERFKDLLLQCPNHGLEKGRLIQILYEGLDFSSKAMIETMS 922 ++ +S+F + E ++C ER+ + + CP+HG + L+ Y+G+ S K ++ETM Sbjct: 624 LKRQISNFSARENEKFYECWERYMEAINACPHHGFDTWLLVSYFYDGMSSSMKQILETMC 683 Query: 923 TGDFCDKTVDDAWSFLEDVAEKVQQWE--TSRE-PKKVASSTTKNAMFHVDKDFDANAKI 1093 GDF K ++A FL V+E + W+ T+RE K+ +K M+++++D + AK+ Sbjct: 684 GGDFMSKNPEEAMDFLSYVSEVSRGWDEPTNREMGKRPVQQMSKGGMYNLNEDMEMKAKV 743 Query: 1094 AALVRRVEALELEKETKSQAQVNNVETPG--CLLCDSLDHVIDNCPGVTAQVNAFNTYQX 1267 AA+ R++E +EL K + QA ++ + P C +C S +H+++ CP + A F Sbjct: 744 AAMARKIEEMELRKVHEVQA-ISEPQQPANPCSICQSFEHMVEECPTIPAVREMFGEQAN 802 Query: 1268 XXXXXXXXXXXXQG------WRNNPN 1327 G WRN+PN Sbjct: 803 LIGQWKPNSNAPYGNTYNSSWRNHPN 828 >gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis] Length = 1788 Score = 226 bits (576), Expect = 1e-56 Identities = 108/253 (42%), Positives = 160/253 (63%), Gaps = 2/253 (0%) Frame = +2 Query: 575 LQQFSDEAIKLKLFPFSLKEKAKSWFHTLPSNSITTWERLCIVFLKNFFPNHKATAFRKN 754 +++ +++AIKL+ PF+LK+KAK W ++LP+NSI+TWE VFLK FFP HK R + Sbjct: 1 MRELTEDAIKLRFIPFALKDKAKKWLYSLPTNSISTWEEFVTVFLKKFFPIHKTVKLRNS 60 Query: 755 LSSFCQADGESLWKCMERFKDLLLQCPNHGLEKGRLIQILYEGLDFSSKAMIETMSTGDF 934 + +F GE WK +RFKDLL+QCP+HGLEK RL Q++YEGLD+SSK +E+M GDF Sbjct: 61 IQNFKIVPGEPFWKYFDRFKDLLIQCPHHGLEKWRLCQVIYEGLDYSSKTSLESMCQGDF 120 Query: 935 CDKTVDDAWSFLEDVAEKVQQWETSREPKKVASSTTKNAMFHVDKDFDANAKIAALVRRV 1114 K D+AW FLE ++EK QWE + + + S +K++ ++ + + AK+A ++RR+ Sbjct: 121 MRKNADEAWEFLESLSEKTMQWENC-DDRVSSVSQSKSSGLSLESNIASEAKMATILRRL 179 Query: 1115 EALELEKETKSQAQVNNVETPGCLLCDSLDHVIDNCP--GVTAQVNAFNTYQXXXXXXXX 1288 EALE+++ ++ AQ+N++ PGC C S HV + CP G + N Sbjct: 180 EALEVKE--RAPAQINHISAPGCHNCQSPTHVSEECPLLGNNHALEQMNAAFQRPRNDPF 237 Query: 1289 XXXXXQGWRNNPN 1327 GWRN+PN Sbjct: 238 SPTYNPGWRNHPN 250