BLASTX nr result
ID: Coptis24_contig00002955
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00002955
(507 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272703.1| PREDICTED: protein DGCR14 [Vitis vinifera] 177 8e-65
ref|XP_002533868.1| protein with unknown function [Ricinus commu... 161 4e-59
ref|XP_002301584.1| predicted protein [Populus trichocarpa] gi|2... 156 4e-57
ref|XP_003617969.1| Protein DGCR14 [Medicago truncatula] gi|3555... 167 9e-57
ref|XP_004144540.1| PREDICTED: protein DGCR14 homolog [Cucumis s... 156 9e-57
>ref|XP_002272703.1| PREDICTED: protein DGCR14 [Vitis vinifera]
Length = 504
Score = 177 bits (450), Expect(2) = 8e-65
Identities = 82/108 (75%), Positives = 95/108 (87%)
Frame = +2
Query: 2 GLTKEIQRTNTRFHGKSVDSRPKEEDTIAVMYTPVAGGTLVFSSYAEREAEKTRKYDLED 181
GLTKE+ TNTRFHGK +DSRPK+EDT+AV+YTP+ G T V S +ERE +K++KYDLED
Sbjct: 259 GLTKEVNLTNTRFHGKLMDSRPKDEDTVAVLYTPIPGATPVPLSLSEREGDKSKKYDLED 318
Query: 182 MRKTPNLFYVEFGKKADNGYNYVKTPSPAPGVDESPFITWGEIEGTPL 325
+RKTPN FYVE K+ADNGY+YVKTPSPAPGVDESPFITWGEIEGTPL
Sbjct: 319 LRKTPNPFYVESRKRADNGYSYVKTPSPAPGVDESPFITWGEIEGTPL 366
Score = 94.7 bits (234), Expect(2) = 8e-65
Identities = 48/61 (78%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
Frame = +1
Query: 328 LRLEQEDTPVGIGGSR-GPQFSIAYPSPRDVKAHSLSREAARKTRERSKMFQKPPLPSPA 504
LRLE EDTP+GIGGS GP F I P RD+KAHSLSREAARK RERSKMFQKPPLPSP
Sbjct: 366 LRLEPEDTPIGIGGSGDGPHFKIPCPPSRDLKAHSLSREAARKLRERSKMFQKPPLPSPV 425
Query: 505 R 507
R
Sbjct: 426 R 426
>ref|XP_002533868.1| protein with unknown function [Ricinus communis]
gi|223526190|gb|EEF28518.1| protein with unknown
function [Ricinus communis]
Length = 519
Score = 161 bits (407), Expect(2) = 4e-59
Identities = 74/108 (68%), Positives = 91/108 (84%)
Frame = +2
Query: 2 GLTKEIQRTNTRFHGKSVDSRPKEEDTIAVMYTPVAGGTLVFSSYAEREAEKTRKYDLED 181
GLTKEI R+NTRFHGK +DSRPK++ ++ V+YTPV GGT + + R +K +KYDLED
Sbjct: 276 GLTKEINRSNTRFHGKMLDSRPKDDGSVEVLYTPVVGGTPL--PVSGRHGDKAKKYDLED 333
Query: 182 MRKTPNLFYVEFGKKADNGYNYVKTPSPAPGVDESPFITWGEIEGTPL 325
+R+TPN FY+E GKKA+NGY +V+TPSPAPGVDESPFITWGEIEGTPL
Sbjct: 334 LRRTPNNFYMESGKKAENGYAFVRTPSPAPGVDESPFITWGEIEGTPL 381
Score = 92.4 bits (228), Expect(2) = 4e-59
Identities = 47/61 (77%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Frame = +1
Query: 328 LRLEQEDTPVGIGGSR-GPQFSIAYPSPRDVKAHSLSREAARKTRERSKMFQKPPLPSPA 504
LRLE EDTP+ IGGS GP F I P RDVKAH+LSREAARK RERSKMFQKPPLPSP
Sbjct: 381 LRLESEDTPIDIGGSGDGPHFKILNPPARDVKAHTLSREAARKLRERSKMFQKPPLPSPG 440
Query: 505 R 507
R
Sbjct: 441 R 441
>ref|XP_002301584.1| predicted protein [Populus trichocarpa] gi|222843310|gb|EEE80857.1|
predicted protein [Populus trichocarpa]
Length = 514
Score = 156 bits (395), Expect(2) = 4e-57
Identities = 70/108 (64%), Positives = 92/108 (85%)
Frame = +2
Query: 2 GLTKEIQRTNTRFHGKSVDSRPKEEDTIAVMYTPVAGGTLVFSSYAEREAEKTRKYDLED 181
GLTKEI R++TRFHGK +D+RP+++ + V+YTPVAG T + +R+ +K +KYDLED
Sbjct: 271 GLTKEINRSSTRFHGKMLDTRPRDDGVVEVLYTPVAGATPL--PMYDRDGDKAKKYDLED 328
Query: 182 MRKTPNLFYVEFGKKADNGYNYVKTPSPAPGVDESPFITWGEIEGTPL 325
+R+TP+ FYVE GKKAD+GY++V+TPSPAPGVDESPFITWGEIEGTP+
Sbjct: 329 LRRTPDRFYVESGKKADDGYSFVRTPSPAPGVDESPFITWGEIEGTPM 376
Score = 90.1 bits (222), Expect(2) = 4e-57
Identities = 44/61 (72%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
Frame = +1
Query: 328 LRLEQEDTPVGIGGS-RGPQFSIAYPSPRDVKAHSLSREAARKTRERSKMFQKPPLPSPA 504
+RLE EDTP+ IGGS GP F I P RDVKAHSLSREA+R+ RE+SKMFQKPPLPSP+
Sbjct: 376 MRLEPEDTPIDIGGSGNGPHFKIPNPPARDVKAHSLSREASRRLREKSKMFQKPPLPSPS 435
Query: 505 R 507
R
Sbjct: 436 R 436
>ref|XP_003617969.1| Protein DGCR14 [Medicago truncatula] gi|355519304|gb|AET00928.1|
Protein DGCR14 [Medicago truncatula]
Length = 510
Score = 167 bits (424), Expect(2) = 9e-57
Identities = 79/106 (74%), Positives = 91/106 (85%)
Frame = +2
Query: 8 TKEIQRTNTRFHGKSVDSRPKEEDTIAVMYTPVAGGTLVFSSYAEREAEKTRKYDLEDMR 187
TKEI R NTRFHGK +DSRPKE+ T+ ++YTPVAG T V S+ R+A+K +KYDLED+R
Sbjct: 269 TKEIDRVNTRFHGKMMDSRPKEDGTVEMLYTPVAGATPVPMSF--RDADKLKKYDLEDLR 326
Query: 188 KTPNLFYVEFGKKADNGYNYVKTPSPAPGVDESPFITWGEIEGTPL 325
KTPN FY+E GKKADNGY+YVKTPSPAPG DESPFITWGEIEGTPL
Sbjct: 327 KTPNPFYLESGKKADNGYSYVKTPSPAPGADESPFITWGEIEGTPL 372
Score = 77.8 bits (190), Expect(2) = 9e-57
Identities = 41/61 (67%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Frame = +1
Query: 328 LRLEQEDTPVGIGGSR-GPQFSIAYPSPRDVKAHSLSREAARKTRERSKMFQKPPLPSPA 504
LRL+ EDTP+ IGGS GP + I RD KAHSLSREAAR RERSK F KPPL SPA
Sbjct: 372 LRLDMEDTPIDIGGSADGPHYRIPSAPARDAKAHSLSREAARNLRERSKKFCKPPLASPA 431
Query: 505 R 507
R
Sbjct: 432 R 432
>ref|XP_004144540.1| PREDICTED: protein DGCR14 homolog [Cucumis sativus]
Length = 509
Score = 156 bits (395), Expect(2) = 9e-57
Identities = 72/108 (66%), Positives = 91/108 (84%)
Frame = +2
Query: 2 GLTKEIQRTNTRFHGKSVDSRPKEEDTIAVMYTPVAGGTLVFSSYAEREAEKTRKYDLED 181
GLTKEI R++TRFHGK +DSRPK++ ++ V+Y PVAG T +R+ ++ +KYDLED
Sbjct: 265 GLTKEINRSSTRFHGKLMDSRPKDDGSVEVIYAPVAGTTP--HPVLDRDGDRLKKYDLED 322
Query: 182 MRKTPNLFYVEFGKKADNGYNYVKTPSPAPGVDESPFITWGEIEGTPL 325
+RKTPN FYVE GK+A+NGY++V+TPSPAPGVDESPFITWGEIEGTPL
Sbjct: 323 LRKTPNPFYVESGKRAENGYSFVRTPSPAPGVDESPFITWGEIEGTPL 370
Score = 89.0 bits (219), Expect(2) = 9e-57
Identities = 44/61 (72%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
Frame = +1
Query: 328 LRLEQEDTPVGIGGS-RGPQFSIAYPSPRDVKAHSLSREAARKTRERSKMFQKPPLPSPA 504
LRL+ EDTP+ IGGS GP+++I P+ RD KAHSLSREAARK RE+SKMFQKPPLPSP
Sbjct: 370 LRLDPEDTPIDIGGSVDGPRYNIPCPAARDEKAHSLSREAARKLREKSKMFQKPPLPSPV 429
Query: 505 R 507
R
Sbjct: 430 R 430