BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002947
         (2140 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519561.1| conserved hypothetical protein [Ricinus comm...   269   6e-84
ref|XP_003634670.1| PREDICTED: transcription factor TCP4-like [V...   249   6e-81
dbj|BAJ07175.1| MdTCP4A [Malus x domestica]                           246   8e-76
gb|ADL36833.1| TCP domain class transcription factor [Malus x do...   238   5e-75
dbj|BAJ07176.1| MdTCP4B [Malus x domestica]                           236   2e-74

>ref|XP_002519561.1| conserved hypothetical protein [Ricinus communis]
            gi|223541258|gb|EEF42810.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 595

 Score =  269 bits (688), Expect(2) = 6e-84
 Identities = 173/356 (48%), Positives = 201/356 (56%), Gaps = 22/356 (6%)
 Frame = +3

Query: 405  LFYGREVEGSSLEAQPPKKRSYFPLSEE----QRRSIEYARFGEKMGDNPQQPQQTTSRL 572
            L+   +++   +   PPKKRS+F  S      Q +  EYAR   KMG++ +Q QQ  +R 
Sbjct: 134  LYQRLDLQQLQIPLHPPKKRSHFSSSSSTSIIQEQGFEYAR---KMGESQRQHQQQPARS 190

Query: 573  GLLKSSXXXXXXXXXXXXXXXRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDR 752
              L +                RSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDR
Sbjct: 191  SRLGTRNTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDR 250

Query: 753  LGYDRPSKAVDWLIKKAKSAIDELAELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGF 932
            LGYDRPSKAVDWLIKKAK+AIDEL EL                              D  
Sbjct: 251  LGYDRPSKAVDWLIKKAKAAIDELEELPAWNPTTAVAKDSTQIGDERDYQLPVENNLDAI 310

Query: 933  AGSSKRPLG------VEQDGSGYGFQQQHLSNNPTSSSGFLPPSLDSDAIADTIKSFFPI 1094
             G++K P           D  G   QQQHL+ NP +SS FLPPSLDSDAIADTIKSFFP+
Sbjct: 311  GGNTKTPAATATTTTTAADVQGIE-QQQHLAENPNNSSSFLPPSLDSDAIADTIKSFFPM 369

Query: 1095 AASTTSPPIHFQNYPPDLLSRTTSSHTQDLRLSLQSFQDPILLXXXXXXXXXXXXXXXXX 1274
             A  T+    FQ+YPPDLLSR TSS  QDLRLSL SFQ+PILL                 
Sbjct: 370  GA--TAETTQFQSYPPDLLSR-TSSQNQDLRLSLHSFQEPILL--QQQHHHHGHAQNEQQ 424

Query: 1275 TLFSNSSP---LPFETNSTSWSD--QQHQ-EIGRFQRMVAWNA------GTDAGSG 1406
             L S+ +      F+ +S  WS+  Q H  +I RFQRM+AWNA       TD GSG
Sbjct: 425  VLLSSGTAAHHFGFDGSSAGWSEHHQNHSADIARFQRMIAWNAAAAAVDATDTGSG 480



 Score = 70.5 bits (171), Expect(2) = 6e-84
 Identities = 44/104 (42%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
 Frame = +2

Query: 1481 GVGFVFNSQQPS--------QPVLGQ-NPFFTQRGPLQSSNSPQFRAWTDPSIANSNQMQ 1633
            G GF+FN   P         QP+ GQ N F +QRGPLQSSN P  RAW DP   + +   
Sbjct: 487  GGGFIFNPILPQTVSPTPLLQPLFGQSNQFLSQRGPLQSSNMPSIRAWIDPGADHHHHHH 546

Query: 1634 SVNQSLXXXXXXXXXXXXXXXXPARIQG-EEEHDAASNKPPSAS 1762
            +    L                PARIQG EEEHD   NKP S S
Sbjct: 547  TQISQLHHHHQQSFGGISGFRVPARIQGEEEEHDGIHNKPSSVS 590


>ref|XP_003634670.1| PREDICTED: transcription factor TCP4-like [Vitis vinifera]
          Length = 398

 Score =  249 bits (637), Expect(2) = 6e-81
 Identities = 155/303 (51%), Positives = 177/303 (58%), Gaps = 10/303 (3%)
 Frame = +3

Query: 528  MGDNPQQPQQ-TTSRLGLLKSSXXXXXXXXXXXXXXXRSTGRKDRHSKVCTAKGPRDRRV 704
            MG+  QQ Q  ++SR+G+   S               RSTGRKDRHSKVCTAKGPRDRRV
Sbjct: 1    MGETHQQQQAASSSRMGM--RSVVGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRV 58

Query: 705  RLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAELXXXXXXXXXXXXXXXXX 884
            RLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAK+AIDELA+L                 
Sbjct: 59   RLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAQLPAWHPTAITVTAAAAAA 118

Query: 885  XXXXXXXXXXXXXDGFAGSSKRPLGVEQDGSGYGFQQQHLSN-------NPTSSSGFLPP 1043
                                + P  V  DG     Q  H +N       NP  +  FLPP
Sbjct: 119  TTATTTHHQE--------DEENPNQVAIDGDDDRVQMHHGNNPDPNPNPNPNQNPSFLPP 170

Query: 1044 SLDSDAIADTIKSFFPIAAS--TTSPPIHFQNYPPDLLSRTTSSHTQDLRLSLQSFQDPI 1217
            SLDSD IADTIKSFFP+ AS  ++S  + FQ+YPPDLLSR TSS  QDLRLSLQSFQDP+
Sbjct: 171  SLDSDTIADTIKSFFPMGASGESSSSSVQFQSYPPDLLSR-TSSQNQDLRLSLQSFQDPM 229

Query: 1218 LLXXXXXXXXXXXXXXXXXTLFSNSSPLPFETNSTSWSDQQHQEIGRFQRMVAWNAGTDA 1397
            LL                  LF   SPL F+  S +WS+    E+GRFQRMVAWNAG ++
Sbjct: 230  LL---HHHHTQSHSHHQQQALF---SPLGFDAPSAAWSEHHAAEMGRFQRMVAWNAGAES 283

Query: 1398 GSG 1406
              G
Sbjct: 284  SGG 286



 Score = 80.1 bits (196), Expect(2) = 6e-81
 Identities = 47/108 (43%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
 Frame = +2

Query: 1481 GVGFVFNSQQ-------PSQPVLGQNPFFTQRGPLQSSNSPQFRAWTDPSIA-------N 1618
            G GFVFNS         P QP+  Q+  ++QRGPLQSSN+P  RAW DP IA       +
Sbjct: 286  GGGFVFNSPPTPTPAPPPLQPLFCQSQMYSQRGPLQSSNTPSIRAWIDPPIAATIDHHHH 345

Query: 1619 SNQMQSVNQSLXXXXXXXXXXXXXXXXPARIQGEEEHDAASNKPPSAS 1762
             +Q   +  S+                PARIQGEEEHD  S+KP SAS
Sbjct: 346  HHQTTPIQPSMISGIGFVPGGFSGFRIPARIQGEEEHDGISDKPSSAS 393


>dbj|BAJ07175.1| MdTCP4A [Malus x domestica]
          Length = 431

 Score =  246 bits (627), Expect(2) = 8e-76
 Identities = 158/308 (51%), Positives = 180/308 (58%), Gaps = 21/308 (6%)
 Frame = +3

Query: 528  MGDNPQQPQQTTSRLGLLKSSXXXXXXXXXXXXXXX-----RSTGRKDRHSKVCTAKGPR 692
            MGD+      T+SRLG+   S                    R+TGRKDRHSKVCTAKGPR
Sbjct: 1    MGDSHHHQATTSSRLGIRPPSSGAGVVSTDIVEVVRGSHIVRATGRKDRHSKVCTAKGPR 60

Query: 693  DRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAELXXXXXXXXXXXXX 872
            DRRVRL+AHTAIQFYDVQDRLGYDRPSKAVDWLIKKAK+AIDEL EL             
Sbjct: 61   DRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELPSWNPHSTSTTAS 120

Query: 873  XXXXXXXXXXXXXXXXX---DGFAGSSKRPLGVEQDGSGYGFQQQHLSNNPTSSSGFLPP 1043
                                D    +++R   V     G G  +Q +  NP S+S FLPP
Sbjct: 121  VPGMETHNPTTTGIHCFAGVDAIGSANQRTTMV-----GSGVSEQKIVQNPNSNSTFLPP 175

Query: 1044 SLDSDAIADTIKSFFP-------IAASTTSPPIHF-QNYPPDLLSRTTSSHTQDLRLSLQ 1199
            SLDSDAIADTIKSFFP        AA   S  I F QNYPPDLLSR TSS +QDLRLSLQ
Sbjct: 176  SLDSDAIADTIKSFFPTGASAIAAAAEAPSSTIQFHQNYPPDLLSR-TSSQSQDLRLSLQ 234

Query: 1200 SFQDPILLXXXXXXXXXXXXXXXXXTLFSNS-SPLPFETNSTSWSD----QQHQEIGRFQ 1364
            SFQDPILL                 +LFS S +PL F+ +S +W++    QQ QE+ RFQ
Sbjct: 235  SFQDPILL-----HQHHAQTHQNEQSLFSGSQNPLGFDGSSAAWAEHHHNQQQQEMNRFQ 289

Query: 1365 RMVAWNAG 1388
            RMVAWN+G
Sbjct: 290  RMVAWNSG 297



 Score = 67.0 bits (162), Expect(2) = 8e-76
 Identities = 47/117 (40%), Positives = 56/117 (47%), Gaps = 22/117 (18%)
 Frame = +2

Query: 1478 SGVGFVFNSQQPSQP------------VLGQNPFFTQRGPLQSSNSPQFRAW-----TDP 1606
            S  GF FNS  P+Q             + GQ+ FF QRGPLQSSNSP  RAW        
Sbjct: 310  SSGGFTFNSLLPTQQSGTSSLQQQQPSLFGQSQFFFQRGPLQSSNSPSIRAWMMDQQNQQ 369

Query: 1607 SIANSNQ---MQSVNQ--SLXXXXXXXXXXXXXXXXPARIQGEEEHDAASNKPPSAS 1762
            SI++ +     QS++   S                 PARI GEEEHD  S+KP SAS
Sbjct: 370  SISHDHHHQISQSIHHQPSFSGMGFTSGGGFSGFHIPARIHGEEEHDGISDKPSSAS 426


>gb|ADL36833.1| TCP domain class transcription factor [Malus x domestica]
          Length = 435

 Score =  238 bits (606), Expect(2) = 5e-75
 Identities = 146/273 (53%), Positives = 169/273 (61%), Gaps = 18/273 (6%)
 Frame = +3

Query: 636  RSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAI 815
            R+TGRKDRHSKVCTAKGPRDRRVRL+AHTAIQFYDVQDRLGYDRPSKAVDWLIKKAK+AI
Sbjct: 46   RATGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAI 105

Query: 816  DELAELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---DGFAGSSKRPLGVEQDGSGYG 986
            DEL EL                                 D    +++R +       G G
Sbjct: 106  DELEELPSWNPHSISTTAAVPAMETQNPSATGIHCFAAVDAIGSANRRTM------VGSG 159

Query: 987  FQQQHLSNNPTSSSGFLPPSLDSDAIADTIKSFFPI-------AASTTSPPIHF-QNYPP 1142
              +Q  + NP S+S FLPPSLDSDAIADTIKSFFP+       AA + S  I F QNYPP
Sbjct: 160  VSEQQFAQNPNSNSTFLPPSLDSDAIADTIKSFFPMGASAAAAAAESPSSTIQFHQNYPP 219

Query: 1143 DLLSRTTSSHTQDLRLSLQSFQDPILL--XXXXXXXXXXXXXXXXXTLFSNS-SPLPFET 1313
            DLLS+  SS +QDLRLSLQSFQDPILL                   TLFS S + L F+ 
Sbjct: 220  DLLSK-ASSQSQDLRLSLQSFQDPILLHHHDAQNQHHHAQTHQNEQTLFSGSQNQLGFDG 278

Query: 1314 NSTSWSD----QQHQEIGRFQRMVAWNAGTDAG 1400
            +  SW++    QQ QE+ RFQRMVAW++G + G
Sbjct: 279  SPGSWAEHHHNQQQQEMNRFQRMVAWDSGGNGG 311



 Score = 72.4 bits (176), Expect(2) = 5e-75
 Identities = 48/117 (41%), Positives = 61/117 (52%), Gaps = 22/117 (18%)
 Frame = +2

Query: 1478 SGVGFVFNSQQPSQP------------VLGQNPFFTQRGPLQSSNSPQFRAW-----TDP 1606
            S  GF+FNS  P+Q             + GQ+ FF+QRGPLQSSNSP  RAW        
Sbjct: 314  SAGGFIFNSLLPTQQGSTSPLQQQQPSLFGQSQFFSQRGPLQSSNSPSVRAWMMDQQNQQ 373

Query: 1607 SIANSNQ---MQSVN--QSLXXXXXXXXXXXXXXXXPARIQGEEEHDAASNKPPSAS 1762
            SI++ ++    QS++  QS+                PARI GEEEHD  S+KP SAS
Sbjct: 374  SISHDHRHQISQSIHHQQSISGMGFASGGGFSGFHIPARIHGEEEHDGTSDKPSSAS 430


>dbj|BAJ07176.1| MdTCP4B [Malus x domestica]
          Length = 435

 Score =  236 bits (601), Expect(2) = 2e-74
 Identities = 145/273 (53%), Positives = 169/273 (61%), Gaps = 18/273 (6%)
 Frame = +3

Query: 636  RSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAI 815
            R+TGRKDRHSKVCTAKGPRDRRVRL+AHTAIQFYDVQDRLGYDRPSKAVDWLIKKAK+AI
Sbjct: 46   RATGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAI 105

Query: 816  DELAELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---DGFAGSSKRPLGVEQDGSGYG 986
            DEL EL                                 D    +++R +       G G
Sbjct: 106  DELEELPSWNPHSISTTAAVPAMETQNPSATGIHCFAAVDAIGSANRRTM------VGSG 159

Query: 987  FQQQHLSNNPTSSSGFLPPSLDSDAIADTIKSFFPI-------AASTTSPPIHF-QNYPP 1142
              +Q  + +P S+S FLPPSLDSDAIADTIKSFFP+       AA + S  I F QNYPP
Sbjct: 160  VSEQQFAQSPNSNSTFLPPSLDSDAIADTIKSFFPMGASAAAAAAESPSSTIQFHQNYPP 219

Query: 1143 DLLSRTTSSHTQDLRLSLQSFQDPILL--XXXXXXXXXXXXXXXXXTLFSNS-SPLPFET 1313
            DLLS+  SS +QDLRLSLQSFQDPILL                   TLFS S + L F+ 
Sbjct: 220  DLLSK-ASSQSQDLRLSLQSFQDPILLHHHDAQNQHHHAQTHQNEQTLFSGSQNQLGFDG 278

Query: 1314 NSTSWSD----QQHQEIGRFQRMVAWNAGTDAG 1400
            +  SW++    QQ QE+ RFQRMVAW++G + G
Sbjct: 279  SPGSWAEHHHNQQQQEMNRFQRMVAWDSGGNGG 311



 Score = 72.0 bits (175), Expect(2) = 2e-74
 Identities = 48/117 (41%), Positives = 60/117 (51%), Gaps = 22/117 (18%)
 Frame = +2

Query: 1478 SGVGFVFNSQQPSQP------------VLGQNPFFTQRGPLQSSNSPQFRAW-----TDP 1606
            S  GF+FNS  P+Q             + GQ+ FF+QRGPLQSSNSP  RAW        
Sbjct: 314  SAGGFIFNSLLPTQQGSTSPLQQQQPSLFGQSQFFSQRGPLQSSNSPSVRAWMVDQQNQQ 373

Query: 1607 SIANSNQ---MQSVN--QSLXXXXXXXXXXXXXXXXPARIQGEEEHDAASNKPPSAS 1762
            SI++ +     QS++  QS+                PARI GEEEHD  S+KP SAS
Sbjct: 374  SISHDHHHQISQSIHHQQSISGMGFASGGGFSGFHIPARIHGEEEHDGTSDKPSSAS 430