BLASTX nr result
ID: Coptis24_contig00002940
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00002940
(1788 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002521836.1| RNA-binding protein Nova-1, putative [Ricinu... 290 9e-76
ref|XP_002278761.1| PREDICTED: uncharacterized protein LOC100259... 221 6e-55
ref|NP_001146241.1| uncharacterized protein LOC100279814 [Zea ma... 220 8e-55
ref|XP_002451801.1| hypothetical protein SORBIDRAFT_04g007950 [S... 217 9e-54
gb|ACN27617.1| unknown [Zea mays] gi|413926085|gb|AFW66017.1| hy... 211 4e-52
>ref|XP_002521836.1| RNA-binding protein Nova-1, putative [Ricinus communis]
gi|223538874|gb|EEF40472.1| RNA-binding protein Nova-1,
putative [Ricinus communis]
Length = 544
Score = 290 bits (742), Expect = 9e-76
Identities = 183/447 (40%), Positives = 239/447 (53%), Gaps = 13/447 (2%)
Frame = +1
Query: 1 VNDVISETDXXXXXXXXXXXXXXXXHGGDQFAMKVPNDKVAWVIGKGGETIKNIQSRSGA 180
+NDVI+ETD G +QF+++VPNDKV +IGKGGETIK +QSRSGA
Sbjct: 152 INDVIAETDAGGSASSAVHGLNTKQPGAEQFSIRVPNDKVGLLIGKGGETIKYMQSRSGA 211
Query: 181 RIQIIPLRLPPGDTSTXXXXXXXXXXXXXXXXXXXXXXPGDTSTERSVYISGTQEQIDSA 360
R+QIIPL LPPGD +T ER+VYI+G EQI++A
Sbjct: 212 RMQIIPLHLPPGDPTT----------------------------ERTVYINGLTEQIEAA 243
Query: 361 KDLINDVVSGNRL-NPQTTSNYTQQGYGPPGNWSQP---PMQQPAHGYAQPGAYPTGXXX 528
K+L+NDV++G R+ +P +S+Y Q Y GNW+QP PMQQP +GYAQPG PT
Sbjct: 244 KELVNDVLNGKRIIDPTGSSSYGQPTYPATGNWAQPGQTPMQQPQYGYAQPGNQPT---- 299
Query: 529 XXXXXXXXXAAPTWDQSNPSSAHLPPXXXXXXXXXXXXXPTETGSAQANASYAYGQAPP- 705
P WDQSNP++ + GSA N+SY Q PP
Sbjct: 300 PPAYYGNYTQQPAWDQSNPTTMS---QTQQMAGYGYYGQQPQMGSAPLNSSY--NQTPPV 354
Query: 706 STNNYDQSYSQQPHSYGQDTAAQAPQHDQQKQYTSPGYGPPAASSQLDGTVLGQSYGTQS 885
+++ Y SYSQQ +YGQ+ ++Q P +QQ+ Y + YG A SSQ DG + QS TQ+
Sbjct: 355 ASSGYGNSYSQQTSNYGQNISSQTPTLEQQRPYATSNYGSAAVSSQSDGAISSQS--TQA 412
Query: 886 S-TQPPSAYPVDYNQPQNVSSAGYGPSQGYTAPLANHPGYDQTGYNQSGYGGQKPPQYLP 1062
+ PP AY PQ Y + GY GYDQTGY+Q+GYG
Sbjct: 413 APAYPPPAYNQQVADPQT-----YWTAAGYAGQPPPQTGYDQTGYSQAGYGVS------- 460
Query: 1063 PVQNPVPTSQPVYGQGGYPSQPAPAQPTYVQGTNPPGYGQQQPHTQSTTYTEK------- 1221
+ ++QPVYGQGGYP QP+PA Y QGTNP GYGQ Q Q +
Sbjct: 461 -----LSSNQPVYGQGGYPLQPSPAAANYAQGTNPLGYGQPQLEAQPQSQPSNNGHSQSL 515
Query: 1222 TYGSERNGDGNNAQSGYASSPAVQEGV 1302
YG+E + DG N+ G+ S+P+V+E V
Sbjct: 516 AYGAEIH-DG-NSNPGHGSNPSVKEAV 540
>ref|XP_002278761.1| PREDICTED: uncharacterized protein LOC100259454 [Vitis vinifera]
Length = 690
Score = 221 bits (562), Expect = 6e-55
Identities = 176/492 (35%), Positives = 212/492 (43%), Gaps = 55/492 (11%)
Frame = +1
Query: 1 VNDVISETDXXXXXXXXXXXXXXXXHGGDQFAMKVPNDKVAWVIGKGGETIKNIQSRSGA 180
+NDV+SE + G +QF MKVPN+KV +IGKGGETIKN+Q+R+GA
Sbjct: 202 INDVLSEAEAGGSGIVSRRLTGQA--GSEQFVMKVPNNKVGLIIGKGGETIKNMQARTGA 259
Query: 181 RIQIIPLRLPPGDTSTXXXXXXXXXXXXXXXXXXXXXXPGDTSTERSVYISGTQEQIDSA 360
RIQ+IPL LPPGDT S ER+V I GT EQI+SA
Sbjct: 260 RIQVIPLHLPPGDT----------------------------SMERTVQIDGTSEQIESA 291
Query: 361 KDLINDVVSGNRL-NPQTTSNYTQQGY--GPPGNW----SQPPMQQPAHGYAQPGAYP-- 513
K L+N+V+S NR+ NP Y QQGY PP W PPMQQP + YAQPG+YP
Sbjct: 292 KQLVNEVISENRIRNPAMAGGYPQQGYQARPPSGWGAPPGAPPMQQPGYSYAQPGSYPGP 351
Query: 514 -----------TGXXXXXXXXXXXXAAPTWDQSNPSSAHLPPXXXXXXXXXXXXXPTETG 660
G AAP Q+ P S + +G
Sbjct: 352 SPQYNMSQPAYAGYSQPNATGWDQTAAPPSQQTTPGSGY-DYYGQQQTQQQQQAHGGPSG 410
Query: 661 SAQANASYAYGQAPPS-TNNYDQSYSQQPHSYGQDTAAQAPQ-----------HDQQKQY 804
A N+ Y Y Q P S N Q Y Q YG A APQ +DQQ+ Y
Sbjct: 411 PAD-NSGYNYNQPPASGYNQQGQGYPQD--GYGGGYHAPAPQPGYGQPQPIPGYDQQQGY 467
Query: 805 TS-PGYGPPAASSQLDGTVLGQSYGTQSST--QPPSAYP-----VDYNQPQNVSSAGYGP 960
S GYG A +Q T SYG Q T PPS P YN Q S P
Sbjct: 468 NSATGYGNVANPTQEGHTT---SYGAQGETGQAPPSVQPSAIGQQGYNTQQPSPSPASYP 524
Query: 961 SQGYTAPLANHPGYDQTGYNQSGYGGQKPPQ------YLPPVQNPVPTSQPVYG------ 1104
QG +N P Y +Q+G+G Q P Q Y PP P + PVYG
Sbjct: 525 PQG-----SNQPAYGMPPTSQTGFGSQPPAQSGYTTNYGPPQAQKAPANPPVYGQTQQSP 579
Query: 1105 --QGGYPSQPAPAQPTYVQGTNPPGY-GQQQPHTQSTTYTEKTYGSERNGDGNNAQSGYA 1275
QGGY +QPAP QP Y PP G Q + S +YG+ G S Y+
Sbjct: 580 SAQGGY-AQPAPVQPGYPHSQQPPAQSGYAQTDSSSQRAAPSSYGTAAGQPGYGGPSAYS 638
Query: 1276 SSPAVQEGVHPQ 1311
+ Q G Q
Sbjct: 639 APTVTQAGYGQQ 650
>ref|NP_001146241.1| uncharacterized protein LOC100279814 [Zea mays]
gi|219886335|gb|ACL53542.1| unknown [Zea mays]
gi|413926084|gb|AFW66016.1| hypothetical protein
ZEAMMB73_777138 [Zea mays]
Length = 692
Score = 220 bits (561), Expect = 8e-55
Identities = 171/465 (36%), Positives = 213/465 (45%), Gaps = 59/465 (12%)
Frame = +1
Query: 79 GGDQFAMKVPNDKVAWVIGKGGETIKNIQSRSGARIQIIPLRLPPGDTSTXXXXXXXXXX 258
G + F MK+ N+KV +IGKGGETIK++Q+ SGARIQ+IPL LP GDTS
Sbjct: 232 GAETFQMKIANNKVGLIIGKGGETIKSMQANSGARIQVIPLHLPAGDTS----------- 280
Query: 259 XXXXXXXXXXXXPGDTSTERSVYISGTQEQIDSAKDLINDVVSGNRLNPQTTSNYTQQGY 438
TER+V+I GTQEQI++AK LI++V S NR + Y+QQGY
Sbjct: 281 -----------------TERTVHIDGTQEQIEAAKQLISEVTSENRARNPMSGGYSQQGY 323
Query: 439 GPP---GNWSQP--PMQQPAHGYAQPGAYPTGXXXXXXXXXXXXAAPT--------WDQS 579
PP NW P P QQP +GY QPGAYP + P WDQS
Sbjct: 324 RPPRPQSNWGPPSVPPQQPGYGYMQPGAYPGAPPQYGAPQQPYGSYPPTSGGYQTGWDQS 383
Query: 580 NPSSAHLPPXXXXXXXXXXXXXPTE-----TGSAQANASYAYGQAPPST---NNYDQSYS 735
+H P P + T ++ SY YGQ PST YD +Y+
Sbjct: 384 QNQQSHTTPPGTGYDYYSQQQQPQQQSAPGTAASTDATSYNYGQ--PSTYASQGYDSTYT 441
Query: 736 QQ---PHSYGQD------TAAQAPQHDQQKQYTSPGYGPPAASSQLDGTVLGQSYG---- 876
QQ +YG D T Q + QQ Y GYG A S T G +YG
Sbjct: 442 QQSGGQQAYGHDGYTGYQTQGQQQGYSQQTGYDQQGYGTSAYGSAASSTQDGSNYGGPGG 501
Query: 877 -TQSS-----------------TQPPSAYPVDYNQPQNVSSAGYG--PSQ-GYTAPLANH 993
+Q+S +QPP++ Y PQ + +GYG PSQ GY
Sbjct: 502 ASQASPGQQTSNPAAGSQPGYTSQPPTSAAATY-PPQGSAPSGYGAPPSQSGYGTQPPQQ 560
Query: 994 PGYDQTGYNQSGYGGQKPPQYLPPVQNPVP-TSQPVYGQGGYPSQPAPAQPTYVQG---T 1161
GY Q Y Q GQKPP P Q P P ++Q YGQ GY SQPA P G
Sbjct: 561 AGYGQGAYGQPSPQGQKPPALSPYGQAPPPGSAQAGYGQYGY-SQPAYGAPPAYPGAPIA 619
Query: 1162 NPPGYGQQQPHTQSTTYTEKTYGSERNGDGNNAQSGYASSPAVQE 1296
+ GYGQQQ + Q +Y + YGS G A S A+ PA +
Sbjct: 620 SHQGYGQQQSYGQQQSYGD-AYGSASYGQ-PPAYSTEATPPAASQ 662
>ref|XP_002451801.1| hypothetical protein SORBIDRAFT_04g007950 [Sorghum bicolor]
gi|241931632|gb|EES04777.1| hypothetical protein
SORBIDRAFT_04g007950 [Sorghum bicolor]
Length = 688
Score = 217 bits (552), Expect = 9e-54
Identities = 169/468 (36%), Positives = 210/468 (44%), Gaps = 58/468 (12%)
Frame = +1
Query: 1 VNDVISETDXXXXXXXXXXXXXXXXHGGDQFAMKVPNDKVAWVIGKGGETIKNIQSRSGA 180
+ +V++E D GG+ F MK+ N+KV VIGKGGETIK++Q ++GA
Sbjct: 209 IKEVLAEADAGSSGGGSGRKYNAPQPGGETFQMKIANNKVGLVIGKGGETIKSMQQKTGA 268
Query: 181 RIQIIPLRLPPGDTSTXXXXXXXXXXXXXXXXXXXXXXPGDTSTERSVYISGTQEQIDSA 360
RIQ+IPL LP GDTS TER+V+I GT EQI+SA
Sbjct: 269 RIQVIPLHLPAGDTS----------------------------TERTVHIDGTPEQIESA 300
Query: 361 KDLINDVVSGNRLNPQTTSNYTQQGYGPP---GNWSQP--PMQQPAHGYAQPGAYPTGXX 525
K L+ +V S NR + Y+QQGY PP NW P P QQP +GY QPGAYP
Sbjct: 301 KQLVIEVTSENRARNPMSGGYSQQGYRPPRPQSNWGPPSAPPQQPGYGYMQPGAYPGAPP 360
Query: 526 XXXXXXXXXXAAPT--------WDQSNPSSAHLPPXXXXXXXXXXXXXPTETGSAQANA- 678
+ P WDQS +H P P + SA A
Sbjct: 361 QYGAPQQPYGSYPPTSGGYQTGWDQSQNQQSHTTPPGTGYDYYSQQQQPQQQQSAPGTAA 420
Query: 679 -----SYAYGQAPPST---NNYDQSYSQQ---PHSYGQD------TAAQAPQHDQQKQYT 807
SY YGQ PST YD +Y+QQ +YG D T Q + QQ Y
Sbjct: 421 STDATSYNYGQ--PSTYASQGYDSTYTQQSGGQQAYGHDGYSGYQTQGQQQGYSQQTGYD 478
Query: 808 SPGYGPPAASSQLDGTVLGQ--SYG----------TQSSTQPPSAYPVDYNQPQNVSSAG 951
GYG A S + T G SYG Q S+ P +++P +QP ++A
Sbjct: 479 QQGYGASAYGSAANSTQDGSAASYGGPGGASQASPGQQSSTPAASHPGYASQPPTSAAAS 538
Query: 952 YGPSQ-----GYTAPL------ANHPGYDQTGYNQSGYGGQKPPQYLPPVQNPVP-TSQP 1095
Y P+Q GY AP PGY Q Y Q GQKPP P Q P P ++Q
Sbjct: 539 Y-PTQGSAPSGYGAPPPQSGYGTQPPGYGQGAYGQPSPQGQKPPASSPYGQAPPPGSAQG 597
Query: 1096 VYGQGGYPSQPAPAQPTYVQG---TNPPGYGQQQPHTQSTTYTEKTYG 1230
YGQ GY SQPA P G ++ PGYGQQQ + Y YG
Sbjct: 598 GYGQYGY-SQPAYGAPPAYPGAPHSSHPGYGQQQSY--GDAYGSGNYG 642
>gb|ACN27617.1| unknown [Zea mays] gi|413926085|gb|AFW66017.1| hypothetical protein
ZEAMMB73_777138 [Zea mays]
Length = 704
Score = 211 bits (538), Expect = 4e-52
Identities = 171/477 (35%), Positives = 213/477 (44%), Gaps = 71/477 (14%)
Frame = +1
Query: 79 GGDQFAMKVPNDKVAWVIGKGGETIKNIQSRSGARIQIIPLRLPPGDTSTXXXXXXXXXX 258
G + F MK+ N+KV +IGKGGETIK++Q+ SGARIQ+IPL LP GDTS
Sbjct: 232 GAETFQMKIANNKVGLIIGKGGETIKSMQANSGARIQVIPLHLPAGDTS----------- 280
Query: 259 XXXXXXXXXXXXPGDTSTERSVYISGTQEQIDSAKDLINDVVS------------GNRLN 402
TER+V+I GTQEQI++AK LI++V S NR
Sbjct: 281 -----------------TERTVHIDGTQEQIEAAKQLISEVTSELARRTANYPGEQNRAR 323
Query: 403 PQTTSNYTQQGYGPP---GNWSQP--PMQQPAHGYAQPGAYPTGXXXXXXXXXXXXAAPT 567
+ Y+QQGY PP NW P P QQP +GY QPGAYP + P
Sbjct: 324 NPMSGGYSQQGYRPPRPQSNWGPPSVPPQQPGYGYMQPGAYPGAPPQYGAPQQPYGSYPP 383
Query: 568 --------WDQSNPSSAHLPPXXXXXXXXXXXXXPTE-----TGSAQANASYAYGQAPPS 708
WDQS +H P P + T ++ SY YGQ PS
Sbjct: 384 TSGGYQTGWDQSQNQQSHTTPPGTGYDYYSQQQQPQQQSAPGTAASTDATSYNYGQ--PS 441
Query: 709 T---NNYDQSYSQQ---PHSYGQD------TAAQAPQHDQQKQYTSPGYGPPAASSQLDG 852
T YD +Y+QQ +YG D T Q + QQ Y GYG A S
Sbjct: 442 TYASQGYDSTYTQQSGGQQAYGHDGYTGYQTQGQQQGYSQQTGYDQQGYGTSAYGSAASS 501
Query: 853 TVLGQSYG-----TQSS-----------------TQPPSAYPVDYNQPQNVSSAGYG--P 960
T G +YG +Q+S +QPP++ Y PQ + +GYG P
Sbjct: 502 TQDGSNYGGPGGASQASPGQQTSNPAAGSQPGYTSQPPTSAAATY-PPQGSAPSGYGAPP 560
Query: 961 SQ-GYTAPLANHPGYDQTGYNQSGYGGQKPPQYLPPVQNPVP-TSQPVYGQGGYPSQPAP 1134
SQ GY GY Q Y Q GQKPP P Q P P ++Q YGQ GY SQPA
Sbjct: 561 SQSGYGTQPPQQAGYGQGAYGQPSPQGQKPPALSPYGQAPPPGSAQAGYGQYGY-SQPAY 619
Query: 1135 AQPTYVQG---TNPPGYGQQQPHTQSTTYTEKTYGSERNGDGNNAQSGYASSPAVQE 1296
P G + GYGQQQ + Q +Y + YGS G A S A+ PA +
Sbjct: 620 GAPPAYPGAPIASHQGYGQQQSYGQQQSYGD-AYGSASYGQ-PPAYSTEATPPAASQ 674