BLASTX nr result

ID: Coptis24_contig00002940 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002940
         (1788 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521836.1| RNA-binding protein Nova-1, putative [Ricinu...   290   9e-76
ref|XP_002278761.1| PREDICTED: uncharacterized protein LOC100259...   221   6e-55
ref|NP_001146241.1| uncharacterized protein LOC100279814 [Zea ma...   220   8e-55
ref|XP_002451801.1| hypothetical protein SORBIDRAFT_04g007950 [S...   217   9e-54
gb|ACN27617.1| unknown [Zea mays] gi|413926085|gb|AFW66017.1| hy...   211   4e-52

>ref|XP_002521836.1| RNA-binding protein Nova-1, putative [Ricinus communis]
            gi|223538874|gb|EEF40472.1| RNA-binding protein Nova-1,
            putative [Ricinus communis]
          Length = 544

 Score =  290 bits (742), Expect = 9e-76
 Identities = 183/447 (40%), Positives = 239/447 (53%), Gaps = 13/447 (2%)
 Frame = +1

Query: 1    VNDVISETDXXXXXXXXXXXXXXXXHGGDQFAMKVPNDKVAWVIGKGGETIKNIQSRSGA 180
            +NDVI+ETD                 G +QF+++VPNDKV  +IGKGGETIK +QSRSGA
Sbjct: 152  INDVIAETDAGGSASSAVHGLNTKQPGAEQFSIRVPNDKVGLLIGKGGETIKYMQSRSGA 211

Query: 181  RIQIIPLRLPPGDTSTXXXXXXXXXXXXXXXXXXXXXXPGDTSTERSVYISGTQEQIDSA 360
            R+QIIPL LPPGD +T                            ER+VYI+G  EQI++A
Sbjct: 212  RMQIIPLHLPPGDPTT----------------------------ERTVYINGLTEQIEAA 243

Query: 361  KDLINDVVSGNRL-NPQTTSNYTQQGYGPPGNWSQP---PMQQPAHGYAQPGAYPTGXXX 528
            K+L+NDV++G R+ +P  +S+Y Q  Y   GNW+QP   PMQQP +GYAQPG  PT    
Sbjct: 244  KELVNDVLNGKRIIDPTGSSSYGQPTYPATGNWAQPGQTPMQQPQYGYAQPGNQPT---- 299

Query: 529  XXXXXXXXXAAPTWDQSNPSSAHLPPXXXXXXXXXXXXXPTETGSAQANASYAYGQAPP- 705
                       P WDQSNP++                    + GSA  N+SY   Q PP 
Sbjct: 300  PPAYYGNYTQQPAWDQSNPTTMS---QTQQMAGYGYYGQQPQMGSAPLNSSY--NQTPPV 354

Query: 706  STNNYDQSYSQQPHSYGQDTAAQAPQHDQQKQYTSPGYGPPAASSQLDGTVLGQSYGTQS 885
            +++ Y  SYSQQ  +YGQ+ ++Q P  +QQ+ Y +  YG  A SSQ DG +  QS  TQ+
Sbjct: 355  ASSGYGNSYSQQTSNYGQNISSQTPTLEQQRPYATSNYGSAAVSSQSDGAISSQS--TQA 412

Query: 886  S-TQPPSAYPVDYNQPQNVSSAGYGPSQGYTAPLANHPGYDQTGYNQSGYGGQKPPQYLP 1062
            +   PP AY      PQ      Y  + GY        GYDQTGY+Q+GYG         
Sbjct: 413  APAYPPPAYNQQVADPQT-----YWTAAGYAGQPPPQTGYDQTGYSQAGYGVS------- 460

Query: 1063 PVQNPVPTSQPVYGQGGYPSQPAPAQPTYVQGTNPPGYGQQQPHTQSTTYTEK------- 1221
                 + ++QPVYGQGGYP QP+PA   Y QGTNP GYGQ Q   Q  +           
Sbjct: 461  -----LSSNQPVYGQGGYPLQPSPAAANYAQGTNPLGYGQPQLEAQPQSQPSNNGHSQSL 515

Query: 1222 TYGSERNGDGNNAQSGYASSPAVQEGV 1302
             YG+E + DG N+  G+ S+P+V+E V
Sbjct: 516  AYGAEIH-DG-NSNPGHGSNPSVKEAV 540


>ref|XP_002278761.1| PREDICTED: uncharacterized protein LOC100259454 [Vitis vinifera]
          Length = 690

 Score =  221 bits (562), Expect = 6e-55
 Identities = 176/492 (35%), Positives = 212/492 (43%), Gaps = 55/492 (11%)
 Frame = +1

Query: 1    VNDVISETDXXXXXXXXXXXXXXXXHGGDQFAMKVPNDKVAWVIGKGGETIKNIQSRSGA 180
            +NDV+SE +                 G +QF MKVPN+KV  +IGKGGETIKN+Q+R+GA
Sbjct: 202  INDVLSEAEAGGSGIVSRRLTGQA--GSEQFVMKVPNNKVGLIIGKGGETIKNMQARTGA 259

Query: 181  RIQIIPLRLPPGDTSTXXXXXXXXXXXXXXXXXXXXXXPGDTSTERSVYISGTQEQIDSA 360
            RIQ+IPL LPPGDT                            S ER+V I GT EQI+SA
Sbjct: 260  RIQVIPLHLPPGDT----------------------------SMERTVQIDGTSEQIESA 291

Query: 361  KDLINDVVSGNRL-NPQTTSNYTQQGY--GPPGNW----SQPPMQQPAHGYAQPGAYP-- 513
            K L+N+V+S NR+ NP     Y QQGY   PP  W      PPMQQP + YAQPG+YP  
Sbjct: 292  KQLVNEVISENRIRNPAMAGGYPQQGYQARPPSGWGAPPGAPPMQQPGYSYAQPGSYPGP 351

Query: 514  -----------TGXXXXXXXXXXXXAAPTWDQSNPSSAHLPPXXXXXXXXXXXXXPTETG 660
                        G            AAP   Q+ P S +                   +G
Sbjct: 352  SPQYNMSQPAYAGYSQPNATGWDQTAAPPSQQTTPGSGY-DYYGQQQTQQQQQAHGGPSG 410

Query: 661  SAQANASYAYGQAPPS-TNNYDQSYSQQPHSYGQDTAAQAPQ-----------HDQQKQY 804
             A  N+ Y Y Q P S  N   Q Y Q    YG    A APQ           +DQQ+ Y
Sbjct: 411  PAD-NSGYNYNQPPASGYNQQGQGYPQD--GYGGGYHAPAPQPGYGQPQPIPGYDQQQGY 467

Query: 805  TS-PGYGPPAASSQLDGTVLGQSYGTQSST--QPPSAYP-----VDYNQPQNVSSAGYGP 960
             S  GYG  A  +Q   T    SYG Q  T   PPS  P       YN  Q   S    P
Sbjct: 468  NSATGYGNVANPTQEGHTT---SYGAQGETGQAPPSVQPSAIGQQGYNTQQPSPSPASYP 524

Query: 961  SQGYTAPLANHPGYDQTGYNQSGYGGQKPPQ------YLPPVQNPVPTSQPVYG------ 1104
             QG     +N P Y     +Q+G+G Q P Q      Y PP     P + PVYG      
Sbjct: 525  PQG-----SNQPAYGMPPTSQTGFGSQPPAQSGYTTNYGPPQAQKAPANPPVYGQTQQSP 579

Query: 1105 --QGGYPSQPAPAQPTYVQGTNPPGY-GQQQPHTQSTTYTEKTYGSERNGDGNNAQSGYA 1275
              QGGY +QPAP QP Y     PP   G  Q  + S      +YG+     G    S Y+
Sbjct: 580  SAQGGY-AQPAPVQPGYPHSQQPPAQSGYAQTDSSSQRAAPSSYGTAAGQPGYGGPSAYS 638

Query: 1276 SSPAVQEGVHPQ 1311
            +    Q G   Q
Sbjct: 639  APTVTQAGYGQQ 650


>ref|NP_001146241.1| uncharacterized protein LOC100279814 [Zea mays]
            gi|219886335|gb|ACL53542.1| unknown [Zea mays]
            gi|413926084|gb|AFW66016.1| hypothetical protein
            ZEAMMB73_777138 [Zea mays]
          Length = 692

 Score =  220 bits (561), Expect = 8e-55
 Identities = 171/465 (36%), Positives = 213/465 (45%), Gaps = 59/465 (12%)
 Frame = +1

Query: 79   GGDQFAMKVPNDKVAWVIGKGGETIKNIQSRSGARIQIIPLRLPPGDTSTXXXXXXXXXX 258
            G + F MK+ N+KV  +IGKGGETIK++Q+ SGARIQ+IPL LP GDTS           
Sbjct: 232  GAETFQMKIANNKVGLIIGKGGETIKSMQANSGARIQVIPLHLPAGDTS----------- 280

Query: 259  XXXXXXXXXXXXPGDTSTERSVYISGTQEQIDSAKDLINDVVSGNRLNPQTTSNYTQQGY 438
                             TER+V+I GTQEQI++AK LI++V S NR     +  Y+QQGY
Sbjct: 281  -----------------TERTVHIDGTQEQIEAAKQLISEVTSENRARNPMSGGYSQQGY 323

Query: 439  GPP---GNWSQP--PMQQPAHGYAQPGAYPTGXXXXXXXXXXXXAAPT--------WDQS 579
             PP    NW  P  P QQP +GY QPGAYP              + P         WDQS
Sbjct: 324  RPPRPQSNWGPPSVPPQQPGYGYMQPGAYPGAPPQYGAPQQPYGSYPPTSGGYQTGWDQS 383

Query: 580  NPSSAHLPPXXXXXXXXXXXXXPTE-----TGSAQANASYAYGQAPPST---NNYDQSYS 735
                +H  P             P +     T ++    SY YGQ  PST     YD +Y+
Sbjct: 384  QNQQSHTTPPGTGYDYYSQQQQPQQQSAPGTAASTDATSYNYGQ--PSTYASQGYDSTYT 441

Query: 736  QQ---PHSYGQD------TAAQAPQHDQQKQYTSPGYGPPAASSQLDGTVLGQSYG---- 876
            QQ     +YG D      T  Q   + QQ  Y   GYG  A  S    T  G +YG    
Sbjct: 442  QQSGGQQAYGHDGYTGYQTQGQQQGYSQQTGYDQQGYGTSAYGSAASSTQDGSNYGGPGG 501

Query: 877  -TQSS-----------------TQPPSAYPVDYNQPQNVSSAGYG--PSQ-GYTAPLANH 993
             +Q+S                 +QPP++    Y  PQ  + +GYG  PSQ GY       
Sbjct: 502  ASQASPGQQTSNPAAGSQPGYTSQPPTSAAATY-PPQGSAPSGYGAPPSQSGYGTQPPQQ 560

Query: 994  PGYDQTGYNQSGYGGQKPPQYLPPVQNPVP-TSQPVYGQGGYPSQPAPAQPTYVQG---T 1161
             GY Q  Y Q    GQKPP   P  Q P P ++Q  YGQ GY SQPA   P    G    
Sbjct: 561  AGYGQGAYGQPSPQGQKPPALSPYGQAPPPGSAQAGYGQYGY-SQPAYGAPPAYPGAPIA 619

Query: 1162 NPPGYGQQQPHTQSTTYTEKTYGSERNGDGNNAQSGYASSPAVQE 1296
            +  GYGQQQ + Q  +Y +  YGS   G    A S  A+ PA  +
Sbjct: 620  SHQGYGQQQSYGQQQSYGD-AYGSASYGQ-PPAYSTEATPPAASQ 662


>ref|XP_002451801.1| hypothetical protein SORBIDRAFT_04g007950 [Sorghum bicolor]
            gi|241931632|gb|EES04777.1| hypothetical protein
            SORBIDRAFT_04g007950 [Sorghum bicolor]
          Length = 688

 Score =  217 bits (552), Expect = 9e-54
 Identities = 169/468 (36%), Positives = 210/468 (44%), Gaps = 58/468 (12%)
 Frame = +1

Query: 1    VNDVISETDXXXXXXXXXXXXXXXXHGGDQFAMKVPNDKVAWVIGKGGETIKNIQSRSGA 180
            + +V++E D                 GG+ F MK+ N+KV  VIGKGGETIK++Q ++GA
Sbjct: 209  IKEVLAEADAGSSGGGSGRKYNAPQPGGETFQMKIANNKVGLVIGKGGETIKSMQQKTGA 268

Query: 181  RIQIIPLRLPPGDTSTXXXXXXXXXXXXXXXXXXXXXXPGDTSTERSVYISGTQEQIDSA 360
            RIQ+IPL LP GDTS                            TER+V+I GT EQI+SA
Sbjct: 269  RIQVIPLHLPAGDTS----------------------------TERTVHIDGTPEQIESA 300

Query: 361  KDLINDVVSGNRLNPQTTSNYTQQGYGPP---GNWSQP--PMQQPAHGYAQPGAYPTGXX 525
            K L+ +V S NR     +  Y+QQGY PP    NW  P  P QQP +GY QPGAYP    
Sbjct: 301  KQLVIEVTSENRARNPMSGGYSQQGYRPPRPQSNWGPPSAPPQQPGYGYMQPGAYPGAPP 360

Query: 526  XXXXXXXXXXAAPT--------WDQSNPSSAHLPPXXXXXXXXXXXXXPTETGSAQANA- 678
                      + P         WDQS    +H  P             P +  SA   A 
Sbjct: 361  QYGAPQQPYGSYPPTSGGYQTGWDQSQNQQSHTTPPGTGYDYYSQQQQPQQQQSAPGTAA 420

Query: 679  -----SYAYGQAPPST---NNYDQSYSQQ---PHSYGQD------TAAQAPQHDQQKQYT 807
                 SY YGQ  PST     YD +Y+QQ     +YG D      T  Q   + QQ  Y 
Sbjct: 421  STDATSYNYGQ--PSTYASQGYDSTYTQQSGGQQAYGHDGYSGYQTQGQQQGYSQQTGYD 478

Query: 808  SPGYGPPAASSQLDGTVLGQ--SYG----------TQSSTQPPSAYPVDYNQPQNVSSAG 951
              GYG  A  S  + T  G   SYG           Q S+ P +++P   +QP   ++A 
Sbjct: 479  QQGYGASAYGSAANSTQDGSAASYGGPGGASQASPGQQSSTPAASHPGYASQPPTSAAAS 538

Query: 952  YGPSQ-----GYTAPL------ANHPGYDQTGYNQSGYGGQKPPQYLPPVQNPVP-TSQP 1095
            Y P+Q     GY AP          PGY Q  Y Q    GQKPP   P  Q P P ++Q 
Sbjct: 539  Y-PTQGSAPSGYGAPPPQSGYGTQPPGYGQGAYGQPSPQGQKPPASSPYGQAPPPGSAQG 597

Query: 1096 VYGQGGYPSQPAPAQPTYVQG---TNPPGYGQQQPHTQSTTYTEKTYG 1230
             YGQ GY SQPA   P    G   ++ PGYGQQQ +     Y    YG
Sbjct: 598  GYGQYGY-SQPAYGAPPAYPGAPHSSHPGYGQQQSY--GDAYGSGNYG 642


>gb|ACN27617.1| unknown [Zea mays] gi|413926085|gb|AFW66017.1| hypothetical protein
            ZEAMMB73_777138 [Zea mays]
          Length = 704

 Score =  211 bits (538), Expect = 4e-52
 Identities = 171/477 (35%), Positives = 213/477 (44%), Gaps = 71/477 (14%)
 Frame = +1

Query: 79   GGDQFAMKVPNDKVAWVIGKGGETIKNIQSRSGARIQIIPLRLPPGDTSTXXXXXXXXXX 258
            G + F MK+ N+KV  +IGKGGETIK++Q+ SGARIQ+IPL LP GDTS           
Sbjct: 232  GAETFQMKIANNKVGLIIGKGGETIKSMQANSGARIQVIPLHLPAGDTS----------- 280

Query: 259  XXXXXXXXXXXXPGDTSTERSVYISGTQEQIDSAKDLINDVVS------------GNRLN 402
                             TER+V+I GTQEQI++AK LI++V S             NR  
Sbjct: 281  -----------------TERTVHIDGTQEQIEAAKQLISEVTSELARRTANYPGEQNRAR 323

Query: 403  PQTTSNYTQQGYGPP---GNWSQP--PMQQPAHGYAQPGAYPTGXXXXXXXXXXXXAAPT 567
               +  Y+QQGY PP    NW  P  P QQP +GY QPGAYP              + P 
Sbjct: 324  NPMSGGYSQQGYRPPRPQSNWGPPSVPPQQPGYGYMQPGAYPGAPPQYGAPQQPYGSYPP 383

Query: 568  --------WDQSNPSSAHLPPXXXXXXXXXXXXXPTE-----TGSAQANASYAYGQAPPS 708
                    WDQS    +H  P             P +     T ++    SY YGQ  PS
Sbjct: 384  TSGGYQTGWDQSQNQQSHTTPPGTGYDYYSQQQQPQQQSAPGTAASTDATSYNYGQ--PS 441

Query: 709  T---NNYDQSYSQQ---PHSYGQD------TAAQAPQHDQQKQYTSPGYGPPAASSQLDG 852
            T     YD +Y+QQ     +YG D      T  Q   + QQ  Y   GYG  A  S    
Sbjct: 442  TYASQGYDSTYTQQSGGQQAYGHDGYTGYQTQGQQQGYSQQTGYDQQGYGTSAYGSAASS 501

Query: 853  TVLGQSYG-----TQSS-----------------TQPPSAYPVDYNQPQNVSSAGYG--P 960
            T  G +YG     +Q+S                 +QPP++    Y  PQ  + +GYG  P
Sbjct: 502  TQDGSNYGGPGGASQASPGQQTSNPAAGSQPGYTSQPPTSAAATY-PPQGSAPSGYGAPP 560

Query: 961  SQ-GYTAPLANHPGYDQTGYNQSGYGGQKPPQYLPPVQNPVP-TSQPVYGQGGYPSQPAP 1134
            SQ GY        GY Q  Y Q    GQKPP   P  Q P P ++Q  YGQ GY SQPA 
Sbjct: 561  SQSGYGTQPPQQAGYGQGAYGQPSPQGQKPPALSPYGQAPPPGSAQAGYGQYGY-SQPAY 619

Query: 1135 AQPTYVQG---TNPPGYGQQQPHTQSTTYTEKTYGSERNGDGNNAQSGYASSPAVQE 1296
              P    G    +  GYGQQQ + Q  +Y +  YGS   G    A S  A+ PA  +
Sbjct: 620  GAPPAYPGAPIASHQGYGQQQSYGQQQSYGD-AYGSASYGQ-PPAYSTEATPPAASQ 674


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