BLASTX nr result
ID: Coptis24_contig00002880
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00002880
(1589 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280874.2| PREDICTED: retinoblastoma-related protein-li... 457 e-154
ref|XP_002529988.1| conserved hypothetical protein [Ricinus comm... 450 e-154
ref|XP_002297730.1| hypothetical protein POPTRDRAFT_547794 [Popu... 454 e-154
gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Popul... 451 e-154
emb|CBI20795.3| unnamed protein product [Vitis vinifera] 454 e-153
>ref|XP_002280874.2| PREDICTED: retinoblastoma-related protein-like [Vitis vinifera]
gi|254789791|sp|A7P514.1|RBR_VITVI RecName:
Full=Retinoblastoma-related protein
gi|359392418|gb|AEV45768.1| RBR protein [Vitis
pseudoreticulata]
Length = 1007
Score = 457 bits (1177), Expect(3) = e-154
Identities = 235/384 (61%), Positives = 285/384 (74%), Gaps = 11/384 (2%)
Frame = +1
Query: 169 ADESDAVEARFQQLCKSGLLLDEGMLLQAMKLFKEXXXXXXXXXXXXXXXXPPEEIERYW 348
A++ AVEARF + CK+GL LDE QAMKLF+E PE+ ERYW
Sbjct: 10 AEQGGAVEARFTEFCKNGLQLDESTFAQAMKLFEESNHLLSTTSLSAIGNGVPEDSERYW 69
Query: 349 FAFIIYCVKRLSDGNNAEI---------TLFQILKITKLNIVDFFKEMPQFLLKAGLVLN 501
FAFI+Y VKRLS+G + L QIL+++KLNIVDFFKE+PQF++K G +L
Sbjct: 70 FAFILYSVKRLSEGTAENVQQGNDENGFNLCQILRVSKLNIVDFFKELPQFIVKVGPILG 129
Query: 502 KIYGLDWEKRLEAKELQANFVHMSVLSKYYKHVYQELFLTSDRDDEKMTVISSTTGYVAD 681
+YG DWEKRLEAKELQANFVH+S+LSKYYK Y E F TS + +K + + S +GYV+D
Sbjct: 130 NLYGPDWEKRLEAKELQANFVHLSILSKYYKRAYLEFFSTSGSNLDKQSSVISASGYVSD 189
Query: 682 YHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFCIRDSPRFVRKG 861
YHRFGWLLFLALR+HAFSRFKDLVTCTNGLVSILAILILHVP+ FR+F I + PRFV+KG
Sbjct: 190 YHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPISFRSFTINNYPRFVKKG 249
Query: 862 SKGVDLLASLCNMYDTSEDDLRRTLEKANDLIANILKKKPSLASECKPENLDYIDTDGLT 1041
+KG+DLLASLC++Y+TSED++R+T+E+ N +I +ILKKKP LASECK ENL ID DGL
Sbjct: 250 NKGMDLLASLCDIYETSEDEVRKTMEQTNKVIVDILKKKPCLASECKSENLASIDPDGLV 309
Query: 1042 YFEDLMEDXXXXXXXXTLEKDYNDAILNKCELDERVFVDDEQSLLGTGSLSEHIN--IGT 1215
YFEDLM++ LEKDY+ AI NK ELDERVF++ E SLLG+GSLS G
Sbjct: 310 YFEDLMDESSLSSSINILEKDYDAAIRNKGELDERVFINGEDSLLGSGSLSGGAMSISGA 369
Query: 1216 KRKFDVVSSLAKTITSPLSPPRSP 1287
KRK D ++S AKTITSPLSP RSP
Sbjct: 370 KRKIDSLASPAKTITSPLSPNRSP 393
Score = 85.5 bits (210), Expect(3) = e-154
Identities = 39/49 (79%), Positives = 46/49 (93%)
Frame = +3
Query: 1326 GGNTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 1472
G N+KMAPTP +TAMTTAKWL TVISPLPSKPSA+LERFL+SCD+D+T+
Sbjct: 398 GANSKMAPTPVTTAMTTAKWLRTVISPLPSKPSAELERFLTSCDKDVTS 446
Score = 54.3 bits (129), Expect(3) = e-154
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2
Query: 1481 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 1588
RRA++ILEAIFP IA GERC+TG SA+LMDSIWA
Sbjct: 450 RRANVILEAIFPSIAFGERCVTG---SASLMDSIWA 482
>ref|XP_002529988.1| conserved hypothetical protein [Ricinus communis]
gi|254789790|sp|B9SVG9.1|RBR_RICCO RecName:
Full=Retinoblastoma-related protein
gi|223530511|gb|EEF32393.1| conserved hypothetical
protein [Ricinus communis]
Length = 1020
Score = 450 bits (1157), Expect(3) = e-154
Identities = 238/383 (62%), Positives = 288/383 (75%), Gaps = 11/383 (2%)
Frame = +1
Query: 175 ESDAVEARFQQLCKSGLLLDEGMLLQAMKLFKEXXXXXXXXXXXXXXXXPPEEIERYWFA 354
E+D +E RF CK GL + E +A+KLFK P EE ER+WFA
Sbjct: 21 ENDTIEVRFTDFCKIGLSVSEDAYEEAIKLFKGTKHLLLANISAIGNGMP-EEAERFWFA 79
Query: 355 FIIYCVKRLSDG---------NNAEITLFQILKITKLNIVDFFKEMPQFLLKAGLVLNKI 507
F+ Y VKRLS+ ++ +TL QIL+ KLNIVDFFKE+PQ+++KAG +L+ +
Sbjct: 80 FVSYSVKRLSEKIRDNMQQRPDDNGLTLCQILRRAKLNIVDFFKELPQYVVKAGPILSTM 139
Query: 508 YGLDWEKRLEAKELQANFVHMSVLSKYYKHVYQELFLTSDRDDEKMTVISSTTGYVADYH 687
YG+DWE RLEAKELQANFVH+S+LS++YK Y+ELFLTSD + +K S T Y++DYH
Sbjct: 140 YGVDWENRLEAKELQANFVHLSILSRHYKRAYRELFLTSDANVDKQ----SATAYMSDYH 195
Query: 688 RFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFCIRDSPRFVRKGSK 867
RFGWLLFLALR+HAFSRFKDLVTCTNGLVS+LAILI+HVPVRFRNF + DS RFV+KG K
Sbjct: 196 RFGWLLFLALRVHAFSRFKDLVTCTNGLVSVLAILIIHVPVRFRNFNLNDSQRFVKKGDK 255
Query: 868 GVDLLASLCNMYDTSEDDLRRTLEKANDLIANILKKKPSLASECKPENLDYIDTDGLTYF 1047
GVDLLASLCN YDTSED+LR+T+EK N+LIA+ILKKKP +ASE K ENLD I+TDGL Y+
Sbjct: 256 GVDLLASLCNKYDTSEDELRKTMEKTNNLIADILKKKPHMASEYKNENLDNINTDGLIYY 315
Query: 1048 EDLMEDXXXXXXXXTLEKDYNDAILNKCELDERVFVDDEQSLLGTGSLS-EHINI-GTKR 1221
EDLME+ LEKDY DAI K ELDERVF+++E SLLG+GSLS I++ GTKR
Sbjct: 316 EDLMEESSLRSSLDILEKDYEDAIRCKGELDERVFINEEDSLLGSGSLSGGAISVTGTKR 375
Query: 1222 KFDVVSSLAKTITSPLSPPRSPA 1290
KFD +SS KTITSPLSP RSPA
Sbjct: 376 KFDQISSPTKTITSPLSPHRSPA 398
Score = 82.4 bits (202), Expect(3) = e-154
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = +3
Query: 1332 NTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 1472
N++MA TP STAMTTAKWL TVISPLPSKPS QLERFL+SCDRD+TN
Sbjct: 409 NSRMAATPVSTAMTTAKWLRTVISPLPSKPSPQLERFLASCDRDVTN 455
Score = 64.7 bits (156), Expect(3) = e-154
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = +2
Query: 1481 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 1588
RRAHIILEAIFP ALGERC+TG+LQS NLMD+IWA
Sbjct: 459 RRAHIILEAIFPSNALGERCVTGSLQSTNLMDNIWA 494
>ref|XP_002297730.1| hypothetical protein POPTRDRAFT_547794 [Populus trichocarpa]
gi|254789789|sp|B9GLX8.1|RBR_POPTR RecName:
Full=Retinoblastoma-related protein
gi|222844988|gb|EEE82535.1| hypothetical protein
POPTRDRAFT_547794 [Populus trichocarpa]
Length = 1035
Score = 454 bits (1167), Expect(3) = e-154
Identities = 241/389 (61%), Positives = 287/389 (73%), Gaps = 11/389 (2%)
Frame = +1
Query: 178 SDAVEARFQQLCKSGLLLDEGMLLQAMKLFKEXXXXXXXXXXXXXXXXPPEEIERYWFAF 357
SDAVE RF CKSGL LDE QA+KLFK+ EE ER+WFAF
Sbjct: 34 SDAVEVRFSDFCKSGLALDENTCTQAIKLFKDTKHLLMTNVSSIGNGTS-EEAERFWFAF 92
Query: 358 IIYCVKRLSDGNNAE---------ITLFQILKITKLNIVDFFKEMPQFLLKAGLVLNKIY 510
+ Y VKRLS+ N + +TL QIL++ KLNIVDFFKE+P F++KAG +L+ IY
Sbjct: 93 VSYSVKRLSEKNRDDAQQKSDDPGLTLCQILRLAKLNIVDFFKELPHFIVKAGPILSNIY 152
Query: 511 GLDWEKRLEAKELQANFVHMSVLSKYYKHVYQELFLTSDRDDEKMTVISSTTGYVADYHR 690
G DWE RLEAKELQANFVH+S+LS++YK +ELFLTSD +K IS+ +V+D+HR
Sbjct: 153 GADWENRLEAKELQANFVHLSILSRHYKRACRELFLTSDASSDKQPAISNEATHVSDHHR 212
Query: 691 FGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFCIRDSPRFVRKGSKG 870
FGWLLFLALR+HAFSRFKDLVTCTNGLVS+LA+LI+HVPVRFRNF DS FVRKG KG
Sbjct: 213 FGWLLFLALRVHAFSRFKDLVTCTNGLVSVLAVLIIHVPVRFRNFSFNDSQWFVRKGDKG 272
Query: 871 VDLLASLCNMYDTSEDDLRRTLEKANDLIANILKKKPSLASECKPENLDYIDTDGLTYFE 1050
VDLLASLCN YDTSE+ LR+++E N+LIANILKKKP ASE K ENL I+ DGL Y+E
Sbjct: 273 VDLLASLCNKYDTSEEVLRKSMETTNNLIANILKKKPHSASEYKNENLVNINPDGLIYYE 332
Query: 1051 DLMEDXXXXXXXXTLEKDYNDAILNKCELDERVFVDDEQSLLGTGSLSE-HINI-GTKRK 1224
DLME+ LEKDY+DAI NK ELDERVF+++E SLLG+GS+S +NI G KRK
Sbjct: 333 DLMEESSLQSSLNILEKDYDDAIRNKAELDERVFINEEDSLLGSGSVSAGSLNITGAKRK 392
Query: 1225 FDVVSSLAKTITSPLSPPRSPAFSPAKGL 1311
FD++SS KTITSPLSP RSPA S A G+
Sbjct: 393 FDLISSPTKTITSPLSPHRSPA-SHANGI 420
Score = 82.8 bits (203), Expect(3) = e-154
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = +3
Query: 1332 NTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 1472
N+KMA TP STAMTTAKWL T+ISPLPSKPSAQLERFL SCD+D+TN
Sbjct: 425 NSKMAATPVSTAMTTAKWLRTIISPLPSKPSAQLERFLVSCDKDVTN 471
Score = 58.9 bits (141), Expect(3) = e-154
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2
Query: 1481 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 1588
RRA IILEAIFP +LGERC+ G+LQS NLMD+IWA
Sbjct: 475 RRAQIILEAIFPSSSLGERCVNGSLQSTNLMDNIWA 510
>gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Populus tremula x Populus
tremuloides]
Length = 1035
Score = 451 bits (1159), Expect(3) = e-154
Identities = 240/389 (61%), Positives = 286/389 (73%), Gaps = 11/389 (2%)
Frame = +1
Query: 178 SDAVEARFQQLCKSGLLLDEGMLLQAMKLFKEXXXXXXXXXXXXXXXXPPEEIERYWFAF 357
SDAVE RF CKSGL LDE QA+KLFK+ EE ER+WFAF
Sbjct: 34 SDAVEVRFSDFCKSGLALDENTCTQAIKLFKDTKHLLMTNVSSIGNGTS-EEAERFWFAF 92
Query: 358 IIYCVKRLSDGNNAE---------ITLFQILKITKLNIVDFFKEMPQFLLKAGLVLNKIY 510
+ Y VKRLS+ N + +TL QIL++ KLNIVDFFKE+P F++KAG +L+ IY
Sbjct: 93 VSYSVKRLSEKNRDDAQQKSDDPGLTLCQILRLAKLNIVDFFKELPHFIVKAGPILSNIY 152
Query: 511 GLDWEKRLEAKELQANFVHMSVLSKYYKHVYQELFLTSDRDDEKMTVISSTTGYVADYHR 690
G DWE RLEAKELQANFVH+S+LS++YK +ELFLTSD +K IS+ +V+D+HR
Sbjct: 153 GADWENRLEAKELQANFVHLSILSRHYKRACRELFLTSDASSDKQPAISNEATHVSDHHR 212
Query: 691 FGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFCIRDSPRFVRKGSKG 870
FGWLLFLALR+HAFSRFKDLVTCTNGLVS+LA+LI+HVPV FRNF DS FVRKG KG
Sbjct: 213 FGWLLFLALRVHAFSRFKDLVTCTNGLVSVLAVLIIHVPVCFRNFSFNDSQWFVRKGDKG 272
Query: 871 VDLLASLCNMYDTSEDDLRRTLEKANDLIANILKKKPSLASECKPENLDYIDTDGLTYFE 1050
VDLLASLCN YDTSE+ LR+++E N+LIANILKKKP ASE K ENL I+ DGL Y+E
Sbjct: 273 VDLLASLCNKYDTSEEVLRKSMETTNNLIANILKKKPHSASEYKNENLVNINPDGLIYYE 332
Query: 1051 DLMEDXXXXXXXXTLEKDYNDAILNKCELDERVFVDDEQSLLGTGSLSE-HINI-GTKRK 1224
DLME+ LEKDY+DAI NK ELDERVF+++E SLLG+GS+S +NI G KRK
Sbjct: 333 DLMEESSLQSSLNILEKDYDDAIRNKAELDERVFINEEDSLLGSGSVSAGSLNITGAKRK 392
Query: 1225 FDVVSSLAKTITSPLSPPRSPAFSPAKGL 1311
FD++SS KTITSPLSP RSPA S A G+
Sbjct: 393 FDLISSPTKTITSPLSPHRSPA-SHANGI 420
Score = 82.8 bits (203), Expect(3) = e-154
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = +3
Query: 1332 NTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 1472
N+KMA TP STAMTTAKWL T+ISPLPSKPSAQLERFL SCD+D+TN
Sbjct: 425 NSKMAATPVSTAMTTAKWLRTIISPLPSKPSAQLERFLVSCDKDVTN 471
Score = 60.8 bits (146), Expect(3) = e-154
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = +2
Query: 1481 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 1588
RRA IILEAIFP +LGERC+TG+LQS NLMD+IWA
Sbjct: 475 RRAQIILEAIFPSSSLGERCVTGSLQSTNLMDNIWA 510
>emb|CBI20795.3| unnamed protein product [Vitis vinifera]
Length = 1006
Score = 454 bits (1167), Expect(3) = e-153
Identities = 235/384 (61%), Positives = 285/384 (74%), Gaps = 11/384 (2%)
Frame = +1
Query: 169 ADESDAVEARFQQLCKSGLLLDEGMLLQAMKLFKEXXXXXXXXXXXXXXXXPPEEIERYW 348
A++ AVEARF + CK+GL LDE QAMKLF+E P E+ ERYW
Sbjct: 10 AEQGGAVEARFTEFCKNGLQLDESTFAQAMKLFEESNHLLSTTSLSAIGNGP-EDSERYW 68
Query: 349 FAFIIYCVKRLSDGNNAEI---------TLFQILKITKLNIVDFFKEMPQFLLKAGLVLN 501
FAFI+Y VKRLS+G + L QIL+++KLNIVDFFKE+PQF++K G +L
Sbjct: 69 FAFILYSVKRLSEGTAENVQQGNDENGFNLCQILRVSKLNIVDFFKELPQFIVKVGPILG 128
Query: 502 KIYGLDWEKRLEAKELQANFVHMSVLSKYYKHVYQELFLTSDRDDEKMTVISSTTGYVAD 681
+YG DWEKRLEAKELQANFVH+S+LSKYYK Y E F TS + +K + + S +GYV+D
Sbjct: 129 NLYGPDWEKRLEAKELQANFVHLSILSKYYKRAYLEFFSTSGSNLDKQSSVISASGYVSD 188
Query: 682 YHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFCIRDSPRFVRKG 861
YHRFGWLLFLALR+HAFSRFKDLVTCTNGLVSILAILILHVP+ FR+F I + PRFV+KG
Sbjct: 189 YHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPISFRSFTINNYPRFVKKG 248
Query: 862 SKGVDLLASLCNMYDTSEDDLRRTLEKANDLIANILKKKPSLASECKPENLDYIDTDGLT 1041
+KG+DLLASLC++Y+TSED++R+T+E+ N +I +ILKKKP LASECK ENL ID DGL
Sbjct: 249 NKGMDLLASLCDIYETSEDEVRKTMEQTNKVIVDILKKKPCLASECKSENLASIDPDGLV 308
Query: 1042 YFEDLMEDXXXXXXXXTLEKDYNDAILNKCELDERVFVDDEQSLLGTGSLSEHIN--IGT 1215
YFEDLM++ LEKDY+ AI NK ELDERVF++ E SLLG+GSLS G
Sbjct: 309 YFEDLMDESSLSSSINILEKDYDAAIRNKGELDERVFINGEDSLLGSGSLSGGAMSISGA 368
Query: 1216 KRKFDVVSSLAKTITSPLSPPRSP 1287
KRK D ++S AKTITSPLSP RSP
Sbjct: 369 KRKIDSLASPAKTITSPLSPNRSP 392
Score = 85.5 bits (210), Expect(3) = e-153
Identities = 39/49 (79%), Positives = 46/49 (93%)
Frame = +3
Query: 1326 GGNTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 1472
G N+KMAPTP +TAMTTAKWL TVISPLPSKPSA+LERFL+SCD+D+T+
Sbjct: 397 GANSKMAPTPVTTAMTTAKWLRTVISPLPSKPSAELERFLTSCDKDVTS 445
Score = 54.3 bits (129), Expect(3) = e-153
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2
Query: 1481 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 1588
RRA++ILEAIFP IA GERC+TG SA+LMDSIWA
Sbjct: 449 RRANVILEAIFPSIAFGERCVTG---SASLMDSIWA 481