BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002833
         (399 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270546.2| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   162   3e-38
ref|XP_002514778.1| pentatricopeptide repeat-containing protein,...   141   5e-32
ref|XP_002300357.1| predicted protein [Populus trichocarpa] gi|2...   141   5e-32
ref|XP_004138984.1| PREDICTED: pentatricopeptide repeat-containi...   134   8e-30
ref|XP_003542095.1| PREDICTED: pentatricopeptide repeat-containi...   134   8e-30

>ref|XP_002270546.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g02650, mitochondrial-like [Vitis vinifera]
          Length = 509

 Score =  162 bits (410), Expect = 3e-38
 Identities = 79/129 (61%), Positives = 99/129 (76%)
 Frame = -2

Query: 389 STRVVDSLVRAFRTGIRKKDVYALWDLVNEIGENDVGVLSTGILNEVMSLFWKLDQGEAA 210
           +TR VD+LVRA    +R+KD Y+LWDLV EIGE + GVL+ GILNE+++ F KL +G+A 
Sbjct: 183 TTRAVDALVRAVCQSVRRKDTYSLWDLVKEIGEKENGVLNVGILNELIAQFAKLGKGKAG 242

Query: 209 LEVLNKFKDFVCEPNGDSYYLTIEALCCCSIYDRALRLCKKMLNARDLPDSKKIGSIISS 30
           LEV N F ++ CEPN DSYY TIEALC  SI+D AL +C+KMLNA  LPDS+K+ +IIS 
Sbjct: 243 LEVFNAFGEYGCEPNADSYYFTIEALCRRSIFDWALSVCEKMLNASSLPDSEKVWNIISW 302

Query: 29  FCKGNKAKD 3
           FCKG K KD
Sbjct: 303 FCKGRKVKD 311


>ref|XP_002514778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545829|gb|EEF47332.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 584

 Score =  141 bits (356), Expect = 5e-32
 Identities = 71/132 (53%), Positives = 96/132 (72%)
 Frame = -2

Query: 398 LKTSTRVVDSLVRAFRTGIRKKDVYALWDLVNEIGENDVGVLSTGILNEVMSLFWKLDQG 219
           +  +TR+V  LVRA  + +RKKD YALWDLV +IGE +  VL+  +LN++++LF KL +G
Sbjct: 199 INVTTRLVHPLVRAICSELRKKDAYALWDLVKDIGEEENTVLNVDLLNQLIALFSKLGKG 258

Query: 218 EAALEVLNKFKDFVCEPNGDSYYLTIEALCCCSIYDRALRLCKKMLNARDLPDSKKIGSI 39
           +AA EV NKF DF C P+ ++Y+ TIEALC  SI+D A  + +KML A  LPD++KIG I
Sbjct: 259 KAAFEVFNKFGDFGCVPDSETYHYTIEALCRRSIFDWASSVREKMLRAEALPDTEKIGKI 318

Query: 38  ISSFCKGNKAKD 3
           I  FCKG+KA D
Sbjct: 319 ICWFCKGDKAND 330


>ref|XP_002300357.1| predicted protein [Populus trichocarpa] gi|222847615|gb|EEE85162.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score =  141 bits (356), Expect = 5e-32
 Identities = 72/133 (54%), Positives = 97/133 (72%), Gaps = 1/133 (0%)
 Frame = -2

Query: 398 LKTSTRVVDSLVRAFRTG-IRKKDVYALWDLVNEIGENDVGVLSTGILNEVMSLFWKLDQ 222
           L  +TR +D LV +  +  +R+K+ YALWDLV EIGE + G++S G LN++++L  KL +
Sbjct: 90  LSVTTRAIDVLVSSICSSELRRKNAYALWDLVREIGEKNEGLVSVGSLNQLIALLSKLGK 149

Query: 221 GEAALEVLNKFKDFVCEPNGDSYYLTIEALCCCSIYDRALRLCKKMLNARDLPDSKKIGS 42
           G+AALEV +K KDF C P+ ++YY TIEALC  S YD A  +C+KML+   LPDS+KIG 
Sbjct: 150 GKAALEVFDKSKDFGCVPDSETYYYTIEALCRRSFYDWAWIVCEKMLDQGPLPDSEKIGK 209

Query: 41  IISSFCKGNKAKD 3
           II  FCKG+KAKD
Sbjct: 210 IICWFCKGSKAKD 222


>ref|XP_004138984.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like [Cucumis sativus]
           gi|449477884|ref|XP_004155152.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like [Cucumis sativus]
          Length = 479

 Score =  134 bits (337), Expect = 8e-30
 Identities = 64/131 (48%), Positives = 92/131 (70%)
 Frame = -2

Query: 395 KTSTRVVDSLVRAFRTGIRKKDVYALWDLVNEIGENDVGVLSTGILNEVMSLFWKLDQGE 216
           + ST VVD LVR     +R++  Y+LW+L+ EIG     +L+  ILN++++ F KL +G+
Sbjct: 94  EVSTPVVDVLVRVVCANLRQRVAYSLWELIKEIGGKQTSLLNAEILNQLIAFFSKLGKGK 153

Query: 215 AALEVLNKFKDFVCEPNGDSYYLTIEALCCCSIYDRALRLCKKMLNARDLPDSKKIGSII 36
           AALEVLN ++   C PN +SYY T+EALC  S YD A  +C+KML++  +P+S ++G II
Sbjct: 154 AALEVLNSYEVLGCVPNAESYYFTVEALCRRSSYDLAWPVCEKMLDSGSMPESNRVGKII 213

Query: 35  SSFCKGNKAKD 3
           S FCKGNKAK+
Sbjct: 214 SLFCKGNKAKN 224


>ref|XP_003542095.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like [Glycine max]
          Length = 539

 Score =  134 bits (337), Expect = 8e-30
 Identities = 70/136 (51%), Positives = 99/136 (72%), Gaps = 4/136 (2%)
 Frame = -2

Query: 398 LKTSTRVVDSLVRAF--RTGIRKKD--VYALWDLVNEIGENDVGVLSTGILNEVMSLFWK 231
           L+ +T +V+SLV A      +RKK   VY+LWDLV EIGE + G+L+  ILNE++S F +
Sbjct: 149 LEVTTPMVESLVLAICGNDDVRKKKEVVYSLWDLVKEIGEKESGLLNVRILNELISSFSR 208

Query: 230 LDQGEAALEVLNKFKDFVCEPNGDSYYLTIEALCCCSIYDRALRLCKKMLNARDLPDSKK 51
           L +G+AALEV +KF+ F C P+ D+YY TIEALC    +D A  +C+KM++AR LPD++K
Sbjct: 209 LRKGKAALEVFDKFEAFHCVPDADTYYFTIEALCRRRAFDWACGVCQKMVDARTLPDAEK 268

Query: 50  IGSIISSFCKGNKAKD 3
           +G+I+S  CKG KAK+
Sbjct: 269 VGAILSWLCKGKKAKE 284