BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002662
         (556 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD18921.1| RNA-binding protein precursor [Persea americana]      217   1e-54
emb|CBI34828.3| unnamed protein product [Vitis vinifera]              216   2e-54
ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   216   2e-54
gb|ABF60862.1| GRSF [Lilium longiflorum]                              206   2e-51
ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ri...   205   3e-51

>emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
          Length = 300

 Score =  217 bits (552), Expect = 1e-54
 Identities = 103/123 (83%), Positives = 118/123 (95%)
 Frame = -3

Query: 554 AIDMFNRYDINGRNLTVNKAAPKGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQVFSE 375
           A++MFNRYDINGR LTVNKAAP+G+R +R PR+FEP+FR+YVGNLPWQVDDARLEQVFSE
Sbjct: 178 AVEMFNRYDINGRLLTVNKAAPRGARVDRPPRAFEPAFRMYVGNLPWQVDDARLEQVFSE 237

Query: 374 YGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAALDGQSLDGRAIKVNVAEERPRR 195
           +GKV +ARVVYDRE+GRSRGFGF+TMSTQTE+DDAIAALDGQSLDGRAI+VNVAE+RPRR
Sbjct: 238 HGKVVEARVVYDRETGRSRGFGFVTMSTQTELDDAIAALDGQSLDGRAIRVNVAEDRPRR 297

Query: 194 NSF 186
            SF
Sbjct: 298 ASF 300



 Score = 74.7 bits (182), Expect = 9e-12
 Identities = 35/82 (42%), Positives = 53/82 (64%)
 Frame = -3

Query: 440 RIYVGNLPWQVDDARLEQVFSEYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAA 261
           +++VGNLP+ VD   L ++F + G V  A V+Y+RE+ +SRGFGF+TMST  E + A+  
Sbjct: 122 KLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEM 181

Query: 260 LDGQSLDGRAIKVNVAEERPRR 195
            +   ++GR + VN A  R  R
Sbjct: 182 FNRYDINGRLLTVNKAAPRGAR 203


>emb|CBI34828.3| unnamed protein product [Vitis vinifera]
          Length = 272

 Score =  216 bits (550), Expect = 2e-54
 Identities = 102/123 (82%), Positives = 118/123 (95%)
 Frame = -3

Query: 554 AIDMFNRYDINGRNLTVNKAAPKGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQVFSE 375
           A++MFNRYD+NGR LTVNKAAP+GSRPER P++FEPSFRIYVGNLPWQVDDARLEQVFSE
Sbjct: 150 AVEMFNRYDLNGRFLTVNKAAPRGSRPERPPQAFEPSFRIYVGNLPWQVDDARLEQVFSE 209

Query: 374 YGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAALDGQSLDGRAIKVNVAEERPRR 195
           +GKV DARVVYDR++ RSRGFGF+TMS++TE++DAIAALDGQSLDGRAI+VNVAEERPRR
Sbjct: 210 HGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEERPRR 269

Query: 194 NSF 186
            S+
Sbjct: 270 GSY 272



 Score = 78.6 bits (192), Expect = 6e-13
 Identities = 38/82 (46%), Positives = 54/82 (65%)
 Frame = -3

Query: 440 RIYVGNLPWQVDDARLEQVFSEYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAA 261
           +++VGNLP+ +D  +L Q+F E G V  A V+Y+RE+ +SRGFGFITMST  E + A+  
Sbjct: 94  KLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVEM 153

Query: 260 LDGQSLDGRAIKVNVAEERPRR 195
            +   L+GR + VN A  R  R
Sbjct: 154 FNRYDLNGRFLTVNKAAPRGSR 175


>ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
           vinifera]
          Length = 312

 Score =  216 bits (550), Expect = 2e-54
 Identities = 102/123 (82%), Positives = 118/123 (95%)
 Frame = -3

Query: 554 AIDMFNRYDINGRNLTVNKAAPKGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQVFSE 375
           A++MFNRYD+NGR LTVNKAAP+GSRPER P++FEPSFRIYVGNLPWQVDDARLEQVFSE
Sbjct: 190 AVEMFNRYDLNGRFLTVNKAAPRGSRPERPPQAFEPSFRIYVGNLPWQVDDARLEQVFSE 249

Query: 374 YGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAALDGQSLDGRAIKVNVAEERPRR 195
           +GKV DARVVYDR++ RSRGFGF+TMS++TE++DAIAALDGQSLDGRAI+VNVAEERPRR
Sbjct: 250 HGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEERPRR 309

Query: 194 NSF 186
            S+
Sbjct: 310 GSY 312



 Score = 78.6 bits (192), Expect = 6e-13
 Identities = 38/82 (46%), Positives = 54/82 (65%)
 Frame = -3

Query: 440 RIYVGNLPWQVDDARLEQVFSEYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAA 261
           +++VGNLP+ +D  +L Q+F E G V  A V+Y+RE+ +SRGFGFITMST  E + A+  
Sbjct: 134 KLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVEM 193

Query: 260 LDGQSLDGRAIKVNVAEERPRR 195
            +   L+GR + VN A  R  R
Sbjct: 194 FNRYDLNGRFLTVNKAAPRGSR 215


>gb|ABF60862.1| GRSF [Lilium longiflorum]
          Length = 207

 Score =  206 bits (525), Expect = 2e-51
 Identities = 98/123 (79%), Positives = 116/123 (94%)
 Frame = -3

Query: 554 AIDMFNRYDINGRNLTVNKAAPKGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQVFSE 375
           A++M +RYDINGRNLTVNKAAP+GSRPER PR  +PS R+YVGNLPWQVDD+RLEQ+FSE
Sbjct: 86  AVEMLHRYDINGRNLTVNKAAPRGSRPER-PRESDPSLRVYVGNLPWQVDDSRLEQLFSE 144

Query: 374 YGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAALDGQSLDGRAIKVNVAEERPRR 195
           +GKV DARVVYDR+SGRSRGFGF+T++T+ EVDDAIAALDGQSL+GRA++VNVAEERPRR
Sbjct: 145 HGKVIDARVVYDRQSGRSRGFGFVTLATREEVDDAIAALDGQSLEGRALRVNVAEERPRR 204

Query: 194 NSF 186
           +SF
Sbjct: 205 SSF 207



 Score = 71.6 bits (174), Expect = 8e-11
 Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
 Frame = -3

Query: 485 GSRPERTPR---SFEPSFRIYVGNLPWQVDDARLEQVFSEYGKVADARVVYDRESGRSRG 315
           G RP+R  R   S     +++VGN+P+  D  +L  +F + G V  A V+Y+RE+ +SRG
Sbjct: 13  GRRPQRRSRRTPSRRRQAKLFVGNIPYD-DSEKLANLFDKAGVVEVAEVIYNRETDQSRG 71

Query: 314 FGFITMSTQTEVDDAIAALDGQSLDGRAIKVNVAEERPRR 195
           FGF+TMST  E + A+  L    ++GR + VN A  R  R
Sbjct: 72  FGFVTMSTVEEAERAVEMLHRYDINGRNLTVNKAAPRGSR 111


>ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223550401|gb|EEF51888.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 319

 Score =  205 bits (522), Expect = 3e-51
 Identities = 95/121 (78%), Positives = 115/121 (95%)
 Frame = -3

Query: 554 AIDMFNRYDINGRNLTVNKAAPKGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQVFSE 375
           A++MF+R+D++GR LTVNKAAP+GSRPER PR FEP +RIYVGNLPW VD+ARLEQ+FSE
Sbjct: 198 AVEMFHRHDLDGRLLTVNKAAPRGSRPERPPRVFEPGYRIYVGNLPWDVDNARLEQIFSE 257

Query: 374 YGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAALDGQSLDGRAIKVNVAEERPRR 195
           +GKV DARVVYDR++GRSRGFGF+TMST+TE++DAIAALDG+SLDGRAI+VNVAE+RPRR
Sbjct: 258 HGKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAALDGRSLDGRAIRVNVAEQRPRR 317

Query: 194 N 192
           N
Sbjct: 318 N 318



 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 41/98 (41%), Positives = 56/98 (57%)
 Frame = -3

Query: 488 KGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQVFSEYGKVADARVVYDRESGRSRGFG 309
           +GS PE          +I+VGNLP+ VD  +L  +F + G V  A V+Y+RE+  SRGFG
Sbjct: 126 EGSEPEEAFEEPPEDAKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDTSRGFG 185

Query: 308 FITMSTQTEVDDAIAALDGQSLDGRAIKVNVAEERPRR 195
           F++MST  E + A+       LDGR + VN A  R  R
Sbjct: 186 FVSMSTVEEAEKAVEMFHRHDLDGRLLTVNKAAPRGSR 223