BLASTX nr result
ID: Coptis24_contig00002610
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00002610 (2204 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex s... 728 0.0 ref|NP_191274.1| H/ACA ribonucleoprotein complex subunit 4 [Arab... 723 0.0 ref|XP_002308911.1| predicted protein [Populus trichocarpa] gi|2... 722 0.0 ref|XP_003545704.1| PREDICTED: H/ACA ribonucleoprotein complex s... 719 0.0 ref|XP_002878134.1| hypothetical protein ARALYDRAFT_486159 [Arab... 719 0.0 >ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera] Length = 586 Score = 728 bits (1880), Expect = 0.0 Identities = 364/454 (80%), Positives = 390/454 (85%) Frame = +3 Query: 144 TPKQNDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIRY 323 T K ++LIKPQSFTP+LDTSQWPILLKNYDRLNVRTGHYTPLPSG+SPLKRPL YIRY Sbjct: 33 TQKDGEFLIKPQSFTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRY 92 Query: 324 GVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 503 G++NLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA Sbjct: 93 GILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 152 Query: 504 GKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDA 683 GKEYVC+ARLHS+VPDV+KVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD Sbjct: 153 GKEYVCVARLHSSVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDP 212 Query: 684 DKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGIMGEKDNMVTMHDVMDA 863 D+HL+VFWISCEAGTYVRT+C MQELRRVRSGI+GEKDNMVTMHDVMDA Sbjct: 213 DRHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDA 272 Query: 864 QWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIEN 1043 QWV+DN RDE+YLRRVIMPLEV+LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIEN Sbjct: 273 QWVYDNYRDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIEN 332 Query: 1044 GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMK 1223 GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVA+IKRVVMDRDTYPRKWGLGPRA+MK Sbjct: 333 GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRAAMK 392 Query: 1224 KKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHAAATEPIPAXXXXXXXXXXX 1403 KK++ EG L+KHGKPNE TP+EW RNVVLPTGGD+MVA AAA EP Sbjct: 393 KKLITEGKLNKHGKPNENTPSEWLRNVVLPTGGDSMVASLAAAVEP---------TVKAE 443 Query: 1404 XXXXXXXXXXXXAPKTEDNNASPAPVPTKKIKVE 1505 K ++ P VP KKIK E Sbjct: 444 TDVKEEIDGEQRKRKLNESTDDPVTVPAKKIKKE 477 >ref|NP_191274.1| H/ACA ribonucleoprotein complex subunit 4 [Arabidopsis thaliana] gi|67460428|sp|Q9LD90.1|CBF5_ARATH RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName: Full=CBF5 homolog; AltName: Full=Dyskerin; AltName: Full=Nopp-140-associated protein of 57 kDa homolog; Short=AtNAP57; AltName: Full=Nucleolar protein NAP57 homolog gi|8901186|gb|AAF43210.2|AF234984_1 putative pseudouridine synthase [Arabidopsis thaliana] gi|6911885|emb|CAB72185.1| putative protein [Arabidopsis thaliana] gi|28392852|gb|AAO41863.1| unknown protein [Arabidopsis thaliana] gi|225898727|dbj|BAH30494.1| hypothetical protein [Arabidopsis thaliana] gi|332646100|gb|AEE79621.1| H/ACA ribonucleoprotein complex subunit 4 [Arabidopsis thaliana] Length = 565 Score = 723 bits (1866), Expect = 0.0 Identities = 360/456 (78%), Positives = 394/456 (86%) Frame = +3 Query: 141 DTPKQNDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIR 320 D DY+IKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTP+ +G SPLKRPL+ YIR Sbjct: 20 DAADTGDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEYIR 79 Query: 321 YGVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 500 YGVINLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG Sbjct: 80 YGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 139 Query: 501 AGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 680 AGKEYVC+ARLHSAVPDV+KVARALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD Sbjct: 140 AGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 199 Query: 681 ADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGIMGEKDNMVTMHDVMD 860 AD+HL+VFW+SCEAGTY+RTMC MQELRRVRSGI+GE +NMVTMHDVMD Sbjct: 200 ADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDVMD 259 Query: 861 AQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIE 1040 AQ+V+DN+RDE+YLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN+I+ Sbjct: 260 AQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDID 319 Query: 1041 NGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 1220 G EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM Sbjct: 320 VGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 379 Query: 1221 KKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHAAATEPIPAXXXXXXXXXX 1400 KKK++A+G LDKHGKPNEKTP EWSRNVVLPTGGD ++AG AAA E I A Sbjct: 380 KKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPEEIKADAENGEAGEA 439 Query: 1401 XXXXXXXXXXXXXAPKTEDNNASPAPVPTKKIKVEE 1508 K +D++ SPAPV TKK K +E Sbjct: 440 RKR------------KHDDSSDSPAPVTTKKSKTKE 463 >ref|XP_002308911.1| predicted protein [Populus trichocarpa] gi|222854887|gb|EEE92434.1| predicted protein [Populus trichocarpa] Length = 593 Score = 722 bits (1863), Expect = 0.0 Identities = 366/460 (79%), Positives = 391/460 (85%), Gaps = 1/460 (0%) Frame = +3 Query: 132 PIVDTPKQNDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLEL 311 P DT K D++IKPQ+FTPT+DTSQWPILLKNYDRLNVRTGHYTPLPSG SPLKRPL Sbjct: 27 PTTDTDK--DFMIKPQNFTPTIDTSQWPILLKNYDRLNVRTGHYTPLPSGHSPLKRPLAE 84 Query: 312 YIRYGVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKS 491 YIRYG++NLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKS Sbjct: 85 YIRYGIMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKS 144 Query: 492 QQGAGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL 671 QQGAGKEYVCIARLH VPDV+KVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL Sbjct: 145 QQGAGKEYVCIARLHDKVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL 204 Query: 672 EYDADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGIMGEKDNMVTMHD 851 EYDAD+HL+VFWISCEAGTYVRTMC MQELRRVRSGI+GEKDNMVTMHD Sbjct: 205 EYDADRHLVVFWISCEAGTYVRTMCVHLGLILGVGAHMQELRRVRSGILGEKDNMVTMHD 264 Query: 852 VMDAQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN 1031 VMDAQWV+DN RDE+YLRR IMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN Sbjct: 265 VMDAQWVYDNYRDESYLRRAIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN 324 Query: 1032 EIENGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPR 1211 +IE GEEVVLMTTKGEA+ALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPR Sbjct: 325 DIEAGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPR 384 Query: 1212 ASMKKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAG-HAAATEPIPAXXXXXX 1388 AS+KKK+++EG LDKHGKPNE TP EW RN+VLP GGD+MVAG AAA EP+ Sbjct: 385 ASIKKKLISEGKLDKHGKPNENTPHEWMRNLVLPPGGDSMVAGIAAAAAEPVVKEIGEEE 444 Query: 1389 XXXXXXXXXXXXXXXXXAPKTEDNNASPAPVPTKKIKVEE 1508 ++ D+ A A VP KK K EE Sbjct: 445 KKKKNKDGEDGEGRKRKLNESSDSPA--AQVPAKKTKTEE 482 >ref|XP_003545704.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine max] Length = 589 Score = 719 bits (1857), Expect = 0.0 Identities = 358/456 (78%), Positives = 389/456 (85%) Frame = +3 Query: 141 DTPKQNDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIR 320 ++ + +IKPQSFTP +DTSQWPILLKNY+RLNVRTGHYTP+PSG+SPLKRPL Y++ Sbjct: 26 ESKDEGGLMIKPQSFTPPIDTSQWPILLKNYERLNVRTGHYTPIPSGYSPLKRPLAEYLK 85 Query: 321 YGVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 500 YGV+NLDKPANPSSHEVVAWIKRLLR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG Sbjct: 86 YGVLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 145 Query: 501 AGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 680 AGKEYVCIARLHS VPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD Sbjct: 146 AGKEYVCIARLHSDVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 205 Query: 681 ADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGIMGEKDNMVTMHDVMD 860 D+HL+VFWISCEAGTYVRTMC MQELRRVRSGIMGEKDNMV+MHDVMD Sbjct: 206 PDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMD 265 Query: 861 AQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIE 1040 AQWV+DN RDE YLRRV+MPLE+LLTSYKRLVVKDSAVNAICYGAK MIPGLLRFEN+I+ Sbjct: 266 AQWVYDNYRDETYLRRVVMPLEILLTSYKRLVVKDSAVNAICYGAKFMIPGLLRFENDID 325 Query: 1041 NGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 1220 GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM Sbjct: 326 VGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 385 Query: 1221 KKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHAAATEPIPAXXXXXXXXXX 1400 KK++++EG LDKHGKPNEKTP EW RN+VLPTGGD+++AG AAA EP Sbjct: 386 KKRLISEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGLAAAPEP-----------ED 434 Query: 1401 XXXXXXXXXXXXXAPKTEDNNASPAPVPTKKIKVEE 1508 K ++ SP VP KK+KV+E Sbjct: 435 DKIQKKEGDGEGKKRKKHESTDSPVAVPAKKVKVDE 470 >ref|XP_002878134.1| hypothetical protein ARALYDRAFT_486159 [Arabidopsis lyrata subsp. lyrata] gi|297323972|gb|EFH54393.1| hypothetical protein ARALYDRAFT_486159 [Arabidopsis lyrata subsp. lyrata] Length = 561 Score = 719 bits (1856), Expect = 0.0 Identities = 358/456 (78%), Positives = 393/456 (86%) Frame = +3 Query: 141 DTPKQNDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIR 320 D DY+IKPQSFTP +DTSQWPILLKNYD LNVRTGHYTP+ +G+SPLKRPL+ YIR Sbjct: 20 DAADTGDYMIKPQSFTPAIDTSQWPILLKNYDLLNVRTGHYTPISAGYSPLKRPLQEYIR 79 Query: 321 YGVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 500 YGVINLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG Sbjct: 80 YGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 139 Query: 501 AGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 680 AGKEYVC+ARLHSAVPDV+KVARALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD Sbjct: 140 AGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 199 Query: 681 ADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGIMGEKDNMVTMHDVMD 860 AD+HL+VFW+SCEAGTY+RTMC MQELRRVRSGI+GE +NMVTMHDVMD Sbjct: 200 ADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDVMD 259 Query: 861 AQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIE 1040 AQ+V+DN+RDE+YLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN+I+ Sbjct: 260 AQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDID 319 Query: 1041 NGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 1220 G EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM Sbjct: 320 VGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 379 Query: 1221 KKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHAAATEPIPAXXXXXXXXXX 1400 KKK++A+G LDKHGKPNEKTP EWSRNVVLPTGGD ++AG AAA I A Sbjct: 380 KKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPVEIKAEAENGEAGEV 439 Query: 1401 XXXXXXXXXXXXXAPKTEDNNASPAPVPTKKIKVEE 1508 K +D++ SPAPV TKK K +E Sbjct: 440 RKR------------KHDDSSDSPAPVSTKKSKTKE 463