BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002610
         (2204 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex s...   728   0.0  
ref|NP_191274.1| H/ACA ribonucleoprotein complex subunit 4 [Arab...   723   0.0  
ref|XP_002308911.1| predicted protein [Populus trichocarpa] gi|2...   722   0.0  
ref|XP_003545704.1| PREDICTED: H/ACA ribonucleoprotein complex s...   719   0.0  
ref|XP_002878134.1| hypothetical protein ARALYDRAFT_486159 [Arab...   719   0.0  

>ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera]
          Length = 586

 Score =  728 bits (1880), Expect = 0.0
 Identities = 364/454 (80%), Positives = 390/454 (85%)
 Frame = +3

Query: 144  TPKQNDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIRY 323
            T K  ++LIKPQSFTP+LDTSQWPILLKNYDRLNVRTGHYTPLPSG+SPLKRPL  YIRY
Sbjct: 33   TQKDGEFLIKPQSFTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRY 92

Query: 324  GVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 503
            G++NLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA
Sbjct: 93   GILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 152

Query: 504  GKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDA 683
            GKEYVC+ARLHS+VPDV+KVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 
Sbjct: 153  GKEYVCVARLHSSVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDP 212

Query: 684  DKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGIMGEKDNMVTMHDVMDA 863
            D+HL+VFWISCEAGTYVRT+C            MQELRRVRSGI+GEKDNMVTMHDVMDA
Sbjct: 213  DRHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDA 272

Query: 864  QWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIEN 1043
            QWV+DN RDE+YLRRVIMPLEV+LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIEN
Sbjct: 273  QWVYDNYRDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIEN 332

Query: 1044 GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMK 1223
            GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVA+IKRVVMDRDTYPRKWGLGPRA+MK
Sbjct: 333  GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRAAMK 392

Query: 1224 KKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHAAATEPIPAXXXXXXXXXXX 1403
            KK++ EG L+KHGKPNE TP+EW RNVVLPTGGD+MVA  AAA EP              
Sbjct: 393  KKLITEGKLNKHGKPNENTPSEWLRNVVLPTGGDSMVASLAAAVEP---------TVKAE 443

Query: 1404 XXXXXXXXXXXXAPKTEDNNASPAPVPTKKIKVE 1505
                          K  ++   P  VP KKIK E
Sbjct: 444  TDVKEEIDGEQRKRKLNESTDDPVTVPAKKIKKE 477


>ref|NP_191274.1| H/ACA ribonucleoprotein complex subunit 4 [Arabidopsis thaliana]
            gi|67460428|sp|Q9LD90.1|CBF5_ARATH RecName: Full=H/ACA
            ribonucleoprotein complex subunit 4; AltName: Full=CBF5
            homolog; AltName: Full=Dyskerin; AltName:
            Full=Nopp-140-associated protein of 57 kDa homolog;
            Short=AtNAP57; AltName: Full=Nucleolar protein NAP57
            homolog gi|8901186|gb|AAF43210.2|AF234984_1 putative
            pseudouridine synthase [Arabidopsis thaliana]
            gi|6911885|emb|CAB72185.1| putative protein [Arabidopsis
            thaliana] gi|28392852|gb|AAO41863.1| unknown protein
            [Arabidopsis thaliana] gi|225898727|dbj|BAH30494.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|332646100|gb|AEE79621.1| H/ACA ribonucleoprotein
            complex subunit 4 [Arabidopsis thaliana]
          Length = 565

 Score =  723 bits (1866), Expect = 0.0
 Identities = 360/456 (78%), Positives = 394/456 (86%)
 Frame = +3

Query: 141  DTPKQNDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIR 320
            D     DY+IKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTP+ +G SPLKRPL+ YIR
Sbjct: 20   DAADTGDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEYIR 79

Query: 321  YGVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 500
            YGVINLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG
Sbjct: 80   YGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 139

Query: 501  AGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 680
            AGKEYVC+ARLHSAVPDV+KVARALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD
Sbjct: 140  AGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 199

Query: 681  ADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGIMGEKDNMVTMHDVMD 860
            AD+HL+VFW+SCEAGTY+RTMC            MQELRRVRSGI+GE +NMVTMHDVMD
Sbjct: 200  ADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDVMD 259

Query: 861  AQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIE 1040
            AQ+V+DN+RDE+YLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN+I+
Sbjct: 260  AQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDID 319

Query: 1041 NGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 1220
             G EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM
Sbjct: 320  VGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 379

Query: 1221 KKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHAAATEPIPAXXXXXXXXXX 1400
            KKK++A+G LDKHGKPNEKTP EWSRNVVLPTGGD ++AG AAA E I A          
Sbjct: 380  KKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPEEIKADAENGEAGEA 439

Query: 1401 XXXXXXXXXXXXXAPKTEDNNASPAPVPTKKIKVEE 1508
                           K +D++ SPAPV TKK K +E
Sbjct: 440  RKR------------KHDDSSDSPAPVTTKKSKTKE 463


>ref|XP_002308911.1| predicted protein [Populus trichocarpa] gi|222854887|gb|EEE92434.1|
            predicted protein [Populus trichocarpa]
          Length = 593

 Score =  722 bits (1863), Expect = 0.0
 Identities = 366/460 (79%), Positives = 391/460 (85%), Gaps = 1/460 (0%)
 Frame = +3

Query: 132  PIVDTPKQNDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLEL 311
            P  DT K  D++IKPQ+FTPT+DTSQWPILLKNYDRLNVRTGHYTPLPSG SPLKRPL  
Sbjct: 27   PTTDTDK--DFMIKPQNFTPTIDTSQWPILLKNYDRLNVRTGHYTPLPSGHSPLKRPLAE 84

Query: 312  YIRYGVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKS 491
            YIRYG++NLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKS
Sbjct: 85   YIRYGIMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKS 144

Query: 492  QQGAGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL 671
            QQGAGKEYVCIARLH  VPDV+KVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL
Sbjct: 145  QQGAGKEYVCIARLHDKVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL 204

Query: 672  EYDADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGIMGEKDNMVTMHD 851
            EYDAD+HL+VFWISCEAGTYVRTMC            MQELRRVRSGI+GEKDNMVTMHD
Sbjct: 205  EYDADRHLVVFWISCEAGTYVRTMCVHLGLILGVGAHMQELRRVRSGILGEKDNMVTMHD 264

Query: 852  VMDAQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN 1031
            VMDAQWV+DN RDE+YLRR IMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN
Sbjct: 265  VMDAQWVYDNYRDESYLRRAIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN 324

Query: 1032 EIENGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPR 1211
            +IE GEEVVLMTTKGEA+ALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPR
Sbjct: 325  DIEAGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPR 384

Query: 1212 ASMKKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAG-HAAATEPIPAXXXXXX 1388
            AS+KKK+++EG LDKHGKPNE TP EW RN+VLP GGD+MVAG  AAA EP+        
Sbjct: 385  ASIKKKLISEGKLDKHGKPNENTPHEWMRNLVLPPGGDSMVAGIAAAAAEPVVKEIGEEE 444

Query: 1389 XXXXXXXXXXXXXXXXXAPKTEDNNASPAPVPTKKIKVEE 1508
                               ++ D+ A  A VP KK K EE
Sbjct: 445  KKKKNKDGEDGEGRKRKLNESSDSPA--AQVPAKKTKTEE 482


>ref|XP_003545704.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine
            max]
          Length = 589

 Score =  719 bits (1857), Expect = 0.0
 Identities = 358/456 (78%), Positives = 389/456 (85%)
 Frame = +3

Query: 141  DTPKQNDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIR 320
            ++  +   +IKPQSFTP +DTSQWPILLKNY+RLNVRTGHYTP+PSG+SPLKRPL  Y++
Sbjct: 26   ESKDEGGLMIKPQSFTPPIDTSQWPILLKNYERLNVRTGHYTPIPSGYSPLKRPLAEYLK 85

Query: 321  YGVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 500
            YGV+NLDKPANPSSHEVVAWIKRLLR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG
Sbjct: 86   YGVLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 145

Query: 501  AGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 680
            AGKEYVCIARLHS VPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD
Sbjct: 146  AGKEYVCIARLHSDVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 205

Query: 681  ADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGIMGEKDNMVTMHDVMD 860
             D+HL+VFWISCEAGTYVRTMC            MQELRRVRSGIMGEKDNMV+MHDVMD
Sbjct: 206  PDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMD 265

Query: 861  AQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIE 1040
            AQWV+DN RDE YLRRV+MPLE+LLTSYKRLVVKDSAVNAICYGAK MIPGLLRFEN+I+
Sbjct: 266  AQWVYDNYRDETYLRRVVMPLEILLTSYKRLVVKDSAVNAICYGAKFMIPGLLRFENDID 325

Query: 1041 NGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 1220
             GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM
Sbjct: 326  VGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 385

Query: 1221 KKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHAAATEPIPAXXXXXXXXXX 1400
            KK++++EG LDKHGKPNEKTP EW RN+VLPTGGD+++AG AAA EP             
Sbjct: 386  KKRLISEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGLAAAPEP-----------ED 434

Query: 1401 XXXXXXXXXXXXXAPKTEDNNASPAPVPTKKIKVEE 1508
                           K  ++  SP  VP KK+KV+E
Sbjct: 435  DKIQKKEGDGEGKKRKKHESTDSPVAVPAKKVKVDE 470


>ref|XP_002878134.1| hypothetical protein ARALYDRAFT_486159 [Arabidopsis lyrata subsp.
            lyrata] gi|297323972|gb|EFH54393.1| hypothetical protein
            ARALYDRAFT_486159 [Arabidopsis lyrata subsp. lyrata]
          Length = 561

 Score =  719 bits (1856), Expect = 0.0
 Identities = 358/456 (78%), Positives = 393/456 (86%)
 Frame = +3

Query: 141  DTPKQNDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIR 320
            D     DY+IKPQSFTP +DTSQWPILLKNYD LNVRTGHYTP+ +G+SPLKRPL+ YIR
Sbjct: 20   DAADTGDYMIKPQSFTPAIDTSQWPILLKNYDLLNVRTGHYTPISAGYSPLKRPLQEYIR 79

Query: 321  YGVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 500
            YGVINLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG
Sbjct: 80   YGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 139

Query: 501  AGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 680
            AGKEYVC+ARLHSAVPDV+KVARALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD
Sbjct: 140  AGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 199

Query: 681  ADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGIMGEKDNMVTMHDVMD 860
            AD+HL+VFW+SCEAGTY+RTMC            MQELRRVRSGI+GE +NMVTMHDVMD
Sbjct: 200  ADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDVMD 259

Query: 861  AQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIE 1040
            AQ+V+DN+RDE+YLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN+I+
Sbjct: 260  AQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDID 319

Query: 1041 NGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 1220
             G EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM
Sbjct: 320  VGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 379

Query: 1221 KKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHAAATEPIPAXXXXXXXXXX 1400
            KKK++A+G LDKHGKPNEKTP EWSRNVVLPTGGD ++AG AAA   I A          
Sbjct: 380  KKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPVEIKAEAENGEAGEV 439

Query: 1401 XXXXXXXXXXXXXAPKTEDNNASPAPVPTKKIKVEE 1508
                           K +D++ SPAPV TKK K +E
Sbjct: 440  RKR------------KHDDSSDSPAPVSTKKSKTKE 463