BLASTX nr result
ID: Coptis24_contig00002574
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00002574 (1705 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containi... 682 0.0 ref|XP_002529915.1| pentatricopeptide repeat-containing protein,... 643 0.0 ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containi... 637 e-180 ref|XP_002303044.1| predicted protein [Populus trichocarpa] gi|2... 634 e-179 ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containi... 627 e-177 >ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Vitis vinifera] gi|297744374|emb|CBI37344.3| unnamed protein product [Vitis vinifera] Length = 497 Score = 682 bits (1760), Expect = 0.0 Identities = 333/427 (77%), Positives = 382/427 (89%) Frame = +1 Query: 169 ASKKAVSVILRREATKAIIEKKRGPTNSKKLLPRTVLEALHERVTALRWESALMVFELLQ 348 ASKKA+SVILRREATKA+IEKKRGP NSKKLLPRTVLEALHER+TALRWESAL VFELL+ Sbjct: 70 ASKKAISVILRREATKAVIEKKRGPNNSKKLLPRTVLEALHERITALRWESALKVFELLR 129 Query: 349 EQLWYRPNPGVYIKLIVMLGKCKQPEKANDLFESMIEEGCIVNHESYTALVSAYSRSGLF 528 EQLWYRPN G+YIKLIVMLGKCKQPEKA+ LF +MI+EGC+VNHE+YTAL+SAYSRSGLF Sbjct: 130 EQLWYRPNSGIYIKLIVMLGKCKQPEKAHALFLAMIDEGCVVNHEAYTALLSAYSRSGLF 189 Query: 529 DRAFSLLDQMKNTRGCEPDVYTYTILIKSCLQVFAFDRVQTLLSDMADQRIKPSTVTYNT 708 D+AFSLL++MKNT C+PDV+TY++LIKSCLQV AFD+V LLSDMA+Q IKP+TVTYNT Sbjct: 190 DKAFSLLEKMKNTPDCQPDVHTYSVLIKSCLQVVAFDKVPVLLSDMANQGIKPNTVTYNT 249 Query: 709 LIDAYGRAGRYGEMESTLVEMLRQRECEPDVWTMNATLRAFGGSGQIETMENCYEKFQNS 888 LIDAYG+A R+ EMESTL+EMLR+ +CEPDVWTMN+TLRAFG SGQIETME CYEKFQ++ Sbjct: 250 LIDAYGKAKRFAEMESTLLEMLREGKCEPDVWTMNSTLRAFGSSGQIETMEKCYEKFQSA 309 Query: 889 GIRPDIKTFNILLDSYGKAGSYQKMSAVMEYMQKYYFSWTIVTYNVVIDAFGRAGDLKQM 1068 GI P+IKTFNILLDSYGKA Y+KMSAVMEYMQKY+FSWTIVTYNVVIDAFGRAGDLKQM Sbjct: 310 GIEPNIKTFNILLDSYGKAEKYEKMSAVMEYMQKYHFSWTIVTYNVVIDAFGRAGDLKQM 369 Query: 1069 EYLFRLMRTEKIKPNCITLSSLVKAYGRAGSAEKIGSVLRFIENSDVTLDTAFFNCLLDA 1248 EYLFRLMR+E+IKP+C+TL SLV+AYGRAG AEKIG VLRFIENSDV LD FFNCL+DA Sbjct: 370 EYLFRLMRSERIKPSCVTLCSLVRAYGRAGKAEKIGGVLRFIENSDVMLDIVFFNCLVDA 429 Query: 1249 YGRMGCLAEMKEASEMMIERGCKADRITYSTMIKAYASNGITSRAKELEDMISKGKRTQE 1428 YGR+GC AEMK EMM ++GCK D+ITY TMIKAY G+TS AKEL+ ++ T+ Sbjct: 430 YGRLGCFAEMKGVLEMMKKKGCKPDKITYRTMIKAYKIGGMTSCAKELQGLMRMPDETRL 489 Query: 1429 KLG*LDF 1449 ++G DF Sbjct: 490 EMGKPDF 496 >ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223530592|gb|EEF32469.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 636 Score = 643 bits (1658), Expect = 0.0 Identities = 310/417 (74%), Positives = 365/417 (87%) Frame = +1 Query: 169 ASKKAVSVILRREATKAIIEKKRGPTNSKKLLPRTVLEALHERVTALRWESALMVFELLQ 348 AS+KA+SVILRREATKAIIEKKRGPTNSKKLLPRTVLEALHER+TALRWESAL VFELL+ Sbjct: 87 ASRKAISVILRREATKAIIEKKRGPTNSKKLLPRTVLEALHERITALRWESALKVFELLR 146 Query: 349 EQLWYRPNPGVYIKLIVMLGKCKQPEKANDLFESMIEEGCIVNHESYTALVSAYSRSGLF 528 EQ+WYRP G+YIKLIVMLGKCKQPEKA++LF++MI EGC V+HESYTAL+SAY RSGL Sbjct: 147 EQIWYRPYSGMYIKLIVMLGKCKQPEKAHELFQAMIHEGCDVSHESYTALLSAYGRSGLL 206 Query: 529 DRAFSLLDQMKNTRGCEPDVYTYTILIKSCLQVFAFDRVQTLLSDMADQRIKPSTVTYNT 708 D+AFSLL++MK C+PDV+TY+ILIKSC+QVFAFD+ +TLLS+M I P+T+TYNT Sbjct: 207 DKAFSLLEEMKRNPDCQPDVHTYSILIKSCVQVFAFDKAKTLLSNMESLGISPNTITYNT 266 Query: 709 LIDAYGRAGRYGEMESTLVEMLRQRECEPDVWTMNATLRAFGGSGQIETMENCYEKFQNS 888 LIDAYG+A + EME+TLV+ML Q+ CEPDVWTMN+TLRAFG SGQIETME CYEKFQ + Sbjct: 267 LIDAYGKAKMFEEMEATLVKMLSQQNCEPDVWTMNSTLRAFGISGQIETMEKCYEKFQGA 326 Query: 889 GIRPDIKTFNILLDSYGKAGSYQKMSAVMEYMQKYYFSWTIVTYNVVIDAFGRAGDLKQM 1068 GI P I TFN+LLDSYGKAG Y+KMSAVMEYMQKY++SWTI+TYN+VIDAFGRAGDLKQM Sbjct: 327 GIEPSIMTFNVLLDSYGKAGDYKKMSAVMEYMQKYHYSWTIITYNIVIDAFGRAGDLKQM 386 Query: 1069 EYLFRLMRTEKIKPNCITLSSLVKAYGRAGSAEKIGSVLRFIENSDVTLDTAFFNCLLDA 1248 EYLFRLMR+E+IKP+C+TL SLV+AYG+A EKI VLRFIENSD+TLDT FFNCL+DA Sbjct: 387 EYLFRLMRSERIKPSCVTLCSLVRAYGQAEKPEKIEGVLRFIENSDITLDTVFFNCLVDA 446 Query: 1249 YGRMGCLAEMKEASEMMIERGCKADRITYSTMIKAYASNGITSRAKELEDMISKGKR 1419 YGRMGC AEMK +M ++G + D+ITY TMIKAY+S G+T KEL+D+ + G R Sbjct: 447 YGRMGCFAEMKGVLILMEQKGYRPDKITYRTMIKAYSSKGMTKHVKELQDLEAAGVR 503 >ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Glycine max] Length = 515 Score = 637 bits (1644), Expect = e-180 Identities = 311/433 (71%), Positives = 370/433 (85%), Gaps = 6/433 (1%) Frame = +1 Query: 169 ASKKAVSVILRREATKAIIEK------KRGPTNSKKLLPRTVLEALHERVTALRWESALM 330 AS+KAVSVIL REATKA+I+K K+GP NSKKLLPRTVLEALHERVTALRWESAL Sbjct: 83 ASQKAVSVILWREATKAMIDKSGGGRKKKGPINSKKLLPRTVLEALHERVTALRWESALK 142 Query: 331 VFELLQEQLWYRPNPGVYIKLIVMLGKCKQPEKANDLFESMIEEGCIVNHESYTALVSAY 510 VFELL EQ+WY+P+ GVYIKLIVMLGKCKQPEKA++LF++M++EGC+++ ESYTAL+SAY Sbjct: 143 VFELLHEQIWYKPDTGVYIKLIVMLGKCKQPEKAHELFQAMVDEGCVLDCESYTALLSAY 202 Query: 511 SRSGLFDRAFSLLDQMKNTRGCEPDVYTYTILIKSCLQVFAFDRVQTLLSDMADQRIKPS 690 SRSGL D+AFSLL++MKNT GC+PDV TY+IL+KSCLQVFAFD++Q+LLSDM ++ IKP+ Sbjct: 203 SRSGLLDKAFSLLEEMKNTPGCQPDVQTYSILLKSCLQVFAFDKIQSLLSDMTNRGIKPN 262 Query: 691 TVTYNTLIDAYGRAGRYGEMESTLVEMLRQRECEPDVWTMNATLRAFGGSGQIETMENCY 870 TVTYNTLIDAYG+A ++ EMES LVEML R C+PDVWTMN+TLRAFG GQIETME CY Sbjct: 263 TVTYNTLIDAYGKARKFSEMESILVEMLADRYCQPDVWTMNSTLRAFGNIGQIETMEKCY 322 Query: 871 EKFQNSGIRPDIKTFNILLDSYGKAGSYQKMSAVMEYMQKYYFSWTIVTYNVVIDAFGRA 1050 EKFQN+GI+P+++TFNILLDSYGKA Y+KMSAVMEYMQKY++SWTIVT+N+VIDAFG+A Sbjct: 323 EKFQNAGIQPNVQTFNILLDSYGKAQDYKKMSAVMEYMQKYHYSWTIVTFNIVIDAFGKA 382 Query: 1051 GDLKQMEYLFRLMRTEKIKPNCITLSSLVKAYGRAGSAEKIGSVLRFIENSDVTLDTAFF 1230 GDLKQMEYLFRLMR+E+IKP+C+TL SLV+AY RAG EKI VLRF+ENSDV LDT FF Sbjct: 383 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYARAGKPEKISGVLRFVENSDVLLDTVFF 442 Query: 1231 NCLLDAYGRMGCLAEMKEASEMMIERGCKADRITYSTMIKAYASNGITSRAKELEDMISK 1410 NCL+DAY R+GCLAEMK EMM + GCK D +TY TMIK Y G+ S AKEL +++ Sbjct: 443 NCLVDAYARLGCLAEMKGVLEMMKQNGCKPDIVTYRTMIKTYTYKGMDSHAKELRELLPT 502 Query: 1411 GKRTQEKLG*LDF 1449 R K DF Sbjct: 503 VNRPPLKRDKPDF 515 >ref|XP_002303044.1| predicted protein [Populus trichocarpa] gi|222844770|gb|EEE82317.1| predicted protein [Populus trichocarpa] Length = 485 Score = 634 bits (1636), Expect = e-179 Identities = 307/419 (73%), Positives = 365/419 (87%) Frame = +1 Query: 169 ASKKAVSVILRREATKAIIEKKRGPTNSKKLLPRTVLEALHERVTALRWESALMVFELLQ 348 AS+KA+SVILRREATKA+IEKKRGPTNSKKLLP+TVLEALHER+TALRW SAL VFELL+ Sbjct: 72 ASQKAISVILRREATKAVIEKKRGPTNSKKLLPQTVLEALHERITALRWASALEVFELLR 131 Query: 349 EQLWYRPNPGVYIKLIVMLGKCKQPEKANDLFESMIEEGCIVNHESYTALVSAYSRSGLF 528 EQLWYRP G+Y+KLIVMLGKCKQP+KA+ LF++MI+EGC V HESYTAL+SAY RSGLF Sbjct: 132 EQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAYGRSGLF 191 Query: 529 DRAFSLLDQMKNTRGCEPDVYTYTILIKSCLQVFAFDRVQTLLSDMADQRIKPSTVTYNT 708 D+AFS++++MKNT C PDV+TY+ILIKSCLQVFAFD+VQ LLSDM I+P+TVT+ Sbjct: 192 DKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPNTVTF-- 249 Query: 709 LIDAYGRAGRYGEMESTLVEMLRQRECEPDVWTMNATLRAFGGSGQIETMENCYEKFQNS 888 EME+TL+EML Q++CEPDVWTMN+T+RAFGGSGQ+E MENCYEKFQ++ Sbjct: 250 -----------AEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSA 298 Query: 889 GIRPDIKTFNILLDSYGKAGSYQKMSAVMEYMQKYYFSWTIVTYNVVIDAFGRAGDLKQM 1068 GI P+IKTFNILLDSYGKAG+YQKMSAVMEYMQ+Y++SWTIVTYNVVIDAFGRAGDLKQM Sbjct: 299 GIEPNIKTFNILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQM 358 Query: 1069 EYLFRLMRTEKIKPNCITLSSLVKAYGRAGSAEKIGSVLRFIENSDVTLDTAFFNCLLDA 1248 EYLFRLMR+E+IKP+C+TL SLV+AY AG EKIGSVLRFIENSDVTLDT FFNCL+DA Sbjct: 359 EYLFRLMRSERIKPSCVTLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDA 418 Query: 1249 YGRMGCLAEMKEASEMMIERGCKADRITYSTMIKAYASNGITSRAKELEDMISKGKRTQ 1425 YGR+ C AEMKE E+M E+GCK D++TY TMIKAY+ G+TS AK+L +++ + T+ Sbjct: 419 YGRLECFAEMKEVLELMEEKGCKPDKVTYRTMIKAYSIKGMTSHAKKLRNLLGSVEVTR 477 >ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Cucumis sativus] Length = 511 Score = 627 bits (1616), Expect = e-177 Identities = 302/425 (71%), Positives = 365/425 (85%), Gaps = 3/425 (0%) Frame = +1 Query: 169 ASKKAVSVILRREATKAIIEKKRGPTNSKKLLPRTVLEALHERVTALRWESALMVFELLQ 348 AS+KA+SVILRREATKA+IE+KRGP NSKKLLPRTVLEALH+R+T LRWESAL VFELL+ Sbjct: 87 ASQKAISVILRREATKAVIERKRGPNNSKKLLPRTVLEALHDRITTLRWESALKVFELLR 146 Query: 349 EQLWYRPNPGVYIKLIVMLGKCKQPEKANDLFESMIEEGCIVNHESYTALVSAYSRSGLF 528 EQLWYRP G+YIKLIVMLGKCKQ EKA +LF+ MIEEGC V+HESYTAL+SAYSRSGL Sbjct: 147 EQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSRSGLL 206 Query: 529 DRAFSLLDQMKNTRGCEPDVYTYTILIKSCLQVFAFDRVQTLLSDMADQRIKPSTVTYNT 708 D AFS+L++MKN+ C+PDV+TY+ILIKSCLQVFAF++ QTLLSDM + IKP+T+TYNT Sbjct: 207 DEAFSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPNTITYNT 266 Query: 709 LIDAYGRAGRYGEMESTLVEMLRQRECEPDVWTMNATLRAFGGSGQIETMENCYEKFQNS 888 IDAYG+A + EMES LV+ML C+PDVWTMN+TLRAFG SGQ+ETME CYEKFQ + Sbjct: 267 FIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCYEKFQEA 326 Query: 889 GIRPDIKTFNILLDSYGKAGSYQKMSAVMEYMQKYYFSWTIVTYNVVIDAFGRAGDLKQM 1068 GI+P I+TFNILLDSYGKA SY+KMSAVMEYMQKY++SWTIVTYN+VIDAFGRAG+LKQM Sbjct: 327 GIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGNLKQM 386 Query: 1069 EYLFRLMRTEKIKPNCITLSSLVKAYGRAGSAEKIGSVLRFIENSDVTLDTAFFNCLLDA 1248 E+LFRLMR+E+IKP+C+TL SLV+AYG+AG EKI SVL +ENSD+ LDT F+NCL+DA Sbjct: 387 EHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVFYNCLVDA 446 Query: 1249 YGRMGCLAEMKEASEMMIERGCKADRITYSTMIKAYASNGITSRAKELEDMIS---KGKR 1419 YGR+ C AEMK+ MM +RGCK D+ TY TM +AY+ G+ + AKE++++I+ KR Sbjct: 447 YGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARAYSDGGMANHAKEIQELITTAEPSKR 506 Query: 1420 TQEKL 1434 T+ L Sbjct: 507 TRPDL 511