BLASTX nr result

ID: Coptis24_contig00002570 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002570
         (2073 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004171246.1| PREDICTED: T-complex protein 1 subunit epsil...   936   0.0  
ref|XP_002283538.1| PREDICTED: T-complex protein 1 subunit epsil...   930   0.0  
ref|XP_002285352.1| PREDICTED: T-complex protein 1 subunit epsil...   930   0.0  
prf||2206327A T complex protein                                       930   0.0  
ref|XP_003538584.1| PREDICTED: T-complex protein 1 subunit epsil...   926   0.0  

>ref|XP_004171246.1| PREDICTED: T-complex protein 1 subunit epsilon-like [Cucumis sativus]
          Length = 535

 Score =  936 bits (2418), Expect = 0.0
 Identities = 471/535 (88%), Positives = 499/535 (93%)
 Frame = +2

Query: 107  MALAFDEYGRPFIIVRDQEQKTRLRGIDAQKAHISAGKAVARILRTSLGPKGMDKMLQSP 286
            MALAFDEYGRPFII+++QEQKTRLRG+DAQKA+I++GKAVARILRTSLGPKGMDKMLQSP
Sbjct: 1    MALAFDEYGRPFIILKEQEQKTRLRGLDAQKANIASGKAVARILRTSLGPKGMDKMLQSP 60

Query: 287  DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMXXXXXXXXXXXX 466
            DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVM            
Sbjct: 61   DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERLL 120

Query: 467  XXXVHPIRVAEGYEMASRISVEHLENIAQKFVFDATNIEPLVQTCMTTLSSKIVNRCKRP 646
               +HPIRVAEGYE+ASRI+V+HLE+IAQKF F   N+EPL+QTCMTTLSSKIVNRCKR 
Sbjct: 121  ERGIHPIRVAEGYELASRIAVDHLEHIAQKFDFGEKNLEPLIQTCMTTLSSKIVNRCKRS 180

Query: 647  LAEIXXXXXXXXXDLERRDVNLDLIKVEGKVGGKLEDTELINGIIVDKDMSHPQMPKQIR 826
            LAEI         DLERRDVNLDLIKVEGKVGGKLEDTEL+ GIIVDKDMSHPQMPKQI 
Sbjct: 181  LAEIAVKAVVAVADLERRDVNLDLIKVEGKVGGKLEDTELVYGIIVDKDMSHPQMPKQIE 240

Query: 827  NAKIAILTCPFEPPKPKTKHKVDIDSVEKFQTLRLQEQKYFDDMVQKCKDVGATLVICQW 1006
            +AKIAILTCPFEPPKPKTKHKVDID+VEKFQTLRLQEQKYFDDMVQKCKDVGATLVICQW
Sbjct: 241  DAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRLQEQKYFDDMVQKCKDVGATLVICQW 300

Query: 1007 GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTAEKLGKAGLVREKSF 1186
            GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELT+EKLGKAGLVREKSF
Sbjct: 301  GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTSEKLGKAGLVREKSF 360

Query: 1187 GTTKERMLYIEECANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGS 1366
            GTTK+RMLYIE CANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGS
Sbjct: 361  GTTKDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGS 420

Query: 1367 AEIACSIAVEAAADRYPGVEQYAIRAFADALDSIPMALAENSGLQPIETLSAVKSQQIKE 1546
            AEI+CS+AVE AAD+YPGVEQYAIRAFADALD++PMALAENSGLQPIETLSAVKSQQIKE
Sbjct: 421  AEISCSVAVETAADKYPGVEQYAIRAFADALDAVPMALAENSGLQPIETLSAVKSQQIKE 480

Query: 1547 NNSYFGIDCNDVGTNDMCKQNVFETLIGKQQQILLATQVVKMILKIDDIISPSDF 1711
            NN Y GIDCND+GTNDM +QNVFETLIGKQQQILLATQVVKMILKIDD+ISPSD+
Sbjct: 481  NNPYCGIDCNDIGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSDY 535


>ref|XP_002283538.1| PREDICTED: T-complex protein 1 subunit epsilon [Vitis vinifera]
            gi|302143543|emb|CBI22104.3| unnamed protein product
            [Vitis vinifera]
          Length = 535

 Score =  930 bits (2404), Expect = 0.0
 Identities = 471/535 (88%), Positives = 497/535 (92%)
 Frame = +2

Query: 107  MALAFDEYGRPFIIVRDQEQKTRLRGIDAQKAHISAGKAVARILRTSLGPKGMDKMLQSP 286
            MALAFDE+GRPFII+R QEQK+RLRG+DAQKA+ISAGKAVARILRTSLGPKGMDK+LQSP
Sbjct: 1    MALAFDEFGRPFIILRGQEQKSRLRGLDAQKANISAGKAVARILRTSLGPKGMDKILQSP 60

Query: 287  DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMXXXXXXXXXXXX 466
            DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVV+            
Sbjct: 61   DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVLAGALLEQAEGLL 120

Query: 467  XXXVHPIRVAEGYEMASRISVEHLENIAQKFVFDATNIEPLVQTCMTTLSSKIVNRCKRP 646
               +HPIRVAEGYEMA RI+VEHLE+IAQKF F  TNIEPLVQTCMTTLSSKIVNRCKR 
Sbjct: 121  ERGIHPIRVAEGYEMACRIAVEHLEHIAQKFEFGVTNIEPLVQTCMTTLSSKIVNRCKRS 180

Query: 647  LAEIXXXXXXXXXDLERRDVNLDLIKVEGKVGGKLEDTELINGIIVDKDMSHPQMPKQIR 826
            LAEI         DLERRDVNLDLIKVEGKVGGKLEDTELI+GI+VDKDMSHPQMPK I 
Sbjct: 181  LAEIAVKAVMAVADLERRDVNLDLIKVEGKVGGKLEDTELIHGIVVDKDMSHPQMPKHIE 240

Query: 827  NAKIAILTCPFEPPKPKTKHKVDIDSVEKFQTLRLQEQKYFDDMVQKCKDVGATLVICQW 1006
            +AKIAILTCPFEPPKPKTKHKVDID+VEKFQTLRLQEQKYFDDMVQKCKDVGATLVICQW
Sbjct: 241  DAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRLQEQKYFDDMVQKCKDVGATLVICQW 300

Query: 1007 GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTAEKLGKAGLVREKSF 1186
            GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELT EKLGKAGLVREKSF
Sbjct: 301  GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSF 360

Query: 1187 GTTKERMLYIEECANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGS 1366
            GTTK+RMLYIE CANSRAVTIF+RGGNKM+IEETKRSIHDALCVARN+IRNNSIVYGGGS
Sbjct: 361  GTTKDRMLYIERCANSRAVTIFVRGGNKMIIEETKRSIHDALCVARNIIRNNSIVYGGGS 420

Query: 1367 AEIACSIAVEAAADRYPGVEQYAIRAFADALDSIPMALAENSGLQPIETLSAVKSQQIKE 1546
            AEI+CSIAVEAAAD+YPGVEQYAIRAF DALDSIPMALAENSGLQPIETLSAVKSQQIK+
Sbjct: 421  AEISCSIAVEAAADKYPGVEQYAIRAFGDALDSIPMALAENSGLQPIETLSAVKSQQIKD 480

Query: 1547 NNSYFGIDCNDVGTNDMCKQNVFETLIGKQQQILLATQVVKMILKIDDIISPSDF 1711
            NN+Y GIDCNDVGT DM +QNVFETLIGKQQQILLATQVVKMILKIDD+ISP+D+
Sbjct: 481  NNAYCGIDCNDVGTYDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPTDY 535


>ref|XP_002285352.1| PREDICTED: T-complex protein 1 subunit epsilon [Vitis vinifera]
          Length = 535

 Score =  930 bits (2404), Expect = 0.0
 Identities = 472/535 (88%), Positives = 498/535 (93%)
 Frame = +2

Query: 107  MALAFDEYGRPFIIVRDQEQKTRLRGIDAQKAHISAGKAVARILRTSLGPKGMDKMLQSP 286
            MALAFDE+GRPFII+++QEQK+RLRG+DAQKA+ISAGKAVARILRTSLGPKGMDKMLQSP
Sbjct: 1    MALAFDEFGRPFIILKEQEQKSRLRGLDAQKANISAGKAVARILRTSLGPKGMDKMLQSP 60

Query: 287  DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMXXXXXXXXXXXX 466
            DGDVTITNDGATILEQMDVDNQIAKL+VELSRSQDYEIGDGTTGVVVM            
Sbjct: 61   DGDVTITNDGATILEQMDVDNQIAKLVVELSRSQDYEIGDGTTGVVVMAGALLEQAERLL 120

Query: 467  XXXVHPIRVAEGYEMASRISVEHLENIAQKFVFDATNIEPLVQTCMTTLSSKIVNRCKRP 646
               +HPIR++EGYEMASRI+VEHLE+IAQKF F  TNIEPLVQTCMTTLSSKIVNRCKR 
Sbjct: 121  ERGIHPIRISEGYEMASRIAVEHLEHIAQKFDFGVTNIEPLVQTCMTTLSSKIVNRCKRS 180

Query: 647  LAEIXXXXXXXXXDLERRDVNLDLIKVEGKVGGKLEDTELINGIIVDKDMSHPQMPKQIR 826
            LAEI         DLER+DVNLDLIKVEGKVGGKLEDTELI GI+VDKDMSHPQMPKQI 
Sbjct: 181  LAEIAVKAVMSVADLERKDVNLDLIKVEGKVGGKLEDTELIYGILVDKDMSHPQMPKQIE 240

Query: 827  NAKIAILTCPFEPPKPKTKHKVDIDSVEKFQTLRLQEQKYFDDMVQKCKDVGATLVICQW 1006
            +AKIAILTCPFEPPKPKTKHKVDID+VEKFQTLR QEQKYFDDMVQKCKDVGATLVICQW
Sbjct: 241  DAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQW 300

Query: 1007 GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTAEKLGKAGLVREKSF 1186
            GFDDEANHLL+HRNLPAVRWVGGVELELIAIATGGRIVPRFQELT EKLGKAGLVREKSF
Sbjct: 301  GFDDEANHLLLHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTQEKLGKAGLVREKSF 360

Query: 1187 GTTKERMLYIEECANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGS 1366
            GTTK+RMLYIE CANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIR+NSIVYGGGS
Sbjct: 361  GTTKDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRSNSIVYGGGS 420

Query: 1367 AEIACSIAVEAAADRYPGVEQYAIRAFADALDSIPMALAENSGLQPIETLSAVKSQQIKE 1546
            AEI+CSIAVEAAADRYPGVEQYAIRAF DALDSIPMALAENSGLQPIETLSAVKSQQIKE
Sbjct: 421  AEISCSIAVEAAADRYPGVEQYAIRAFGDALDSIPMALAENSGLQPIETLSAVKSQQIKE 480

Query: 1547 NNSYFGIDCNDVGTNDMCKQNVFETLIGKQQQILLATQVVKMILKIDDIISPSDF 1711
            +N Y GIDCNDVGTNDM +QNVFETLIGKQQQILLATQVVKMILKIDD+ISPS++
Sbjct: 481  DNPYCGIDCNDVGTNDMQEQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 535


>prf||2206327A T complex protein
          Length = 534

 Score =  930 bits (2404), Expect = 0.0
 Identities = 471/535 (88%), Positives = 498/535 (93%)
 Frame = +2

Query: 107  MALAFDEYGRPFIIVRDQEQKTRLRGIDAQKAHISAGKAVARILRTSLGPKGMDKMLQSP 286
            MALAFDEYGRPFII+++QEQKTRLRG+DAQKA+I++GKAVARILRTSLGPKGMDKMLQSP
Sbjct: 1    MALAFDEYGRPFIILKEQEQKTRLRGLDAQKANIASGKAVARILRTSLGPKGMDKMLQSP 60

Query: 287  DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMXXXXXXXXXXXX 466
            DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVM            
Sbjct: 61   DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERLL 120

Query: 467  XXXVHPIRVAEGYEMASRISVEHLENIAQKFVFDATNIEPLVQTCMTTLSSKIVNRCKRP 646
               +HPIRVAEGYE+ASRI+V+HLE+IAQKF F   NIEPL+QTCMTTLSSKIVNRCKR 
Sbjct: 121  ERGIHPIRVAEGYELASRIAVDHLEHIAQKFDFGEKNIEPLIQTCMTTLSSKIVNRCKRS 180

Query: 647  LAEIXXXXXXXXXDLERRDVNLDLIKVEGKVGGKLEDTELINGIIVDKDMSHPQMPKQIR 826
            LAEI         DLERRDVNLDLIKVEGKVGGKLEDTEL+ GIIVDKDMSHPQMPKQI 
Sbjct: 181  LAEIAVKAVVAVADLERRDVNLDLIKVEGKVGGKLEDTELVYGIIVDKDMSHPQMPKQIE 240

Query: 827  NAKIAILTCPFEPPKPKTKHKVDIDSVEKFQTLRLQEQKYFDDMVQKCKDVGATLVICQW 1006
            +AKIAILTCPFEPPKPKTKHKVDID+VEKFQTLRLQEQKYFDDMVQKCKDVGATL ICQW
Sbjct: 241  DAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRLQEQKYFDDMVQKCKDVGATL-ICQW 299

Query: 1007 GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTAEKLGKAGLVREKSF 1186
            GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELT+EKLGKAGLVREKSF
Sbjct: 300  GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTSEKLGKAGLVREKSF 359

Query: 1187 GTTKERMLYIEECANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGS 1366
            GTTK+RMLYIE CANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGS
Sbjct: 360  GTTKDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGS 419

Query: 1367 AEIACSIAVEAAADRYPGVEQYAIRAFADALDSIPMALAENSGLQPIETLSAVKSQQIKE 1546
            AEI+CS+AVE AAD+YPGVEQYAIRAFADALD++PMALAENSGLQPIETLSAVKSQQIKE
Sbjct: 420  AEISCSVAVETAADKYPGVEQYAIRAFADALDAVPMALAENSGLQPIETLSAVKSQQIKE 479

Query: 1547 NNSYFGIDCNDVGTNDMCKQNVFETLIGKQQQILLATQVVKMILKIDDIISPSDF 1711
            NN Y GIDCND+GTNDM +QNVFETLIGKQQQILLATQVVKMILKIDD+ISPSD+
Sbjct: 480  NNPYCGIDCNDIGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSDY 534


>ref|XP_003538584.1| PREDICTED: T-complex protein 1 subunit epsilon-like [Glycine max]
          Length = 535

 Score =  926 bits (2394), Expect = 0.0
 Identities = 464/535 (86%), Positives = 498/535 (93%)
 Frame = +2

Query: 107  MALAFDEYGRPFIIVRDQEQKTRLRGIDAQKAHISAGKAVARILRTSLGPKGMDKMLQSP 286
            MALAFDE+GRPFII+++QEQK+RLRG+DAQKA+ISAGKAVARILRTSLGPKGMDKMLQSP
Sbjct: 1    MALAFDEFGRPFIILKEQEQKSRLRGLDAQKANISAGKAVARILRTSLGPKGMDKMLQSP 60

Query: 287  DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMXXXXXXXXXXXX 466
            DGDVTITNDGATIL+QMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVM            
Sbjct: 61   DGDVTITNDGATILDQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEKAERLL 120

Query: 467  XXXVHPIRVAEGYEMASRISVEHLENIAQKFVFDATNIEPLVQTCMTTLSSKIVNRCKRP 646
               +HPIR+AEGYEMASRI+VEHLE +A KF FD +N+EPL+QTCMTTLSSKIVNRCKR 
Sbjct: 121  ERGIHPIRIAEGYEMASRIAVEHLERVANKFEFDESNLEPLIQTCMTTLSSKIVNRCKRS 180

Query: 647  LAEIXXXXXXXXXDLERRDVNLDLIKVEGKVGGKLEDTELINGIIVDKDMSHPQMPKQIR 826
            LAEI         DL R+DVNLDLIKVEGKVGGKLEDTELI GI+VDKDMSHPQMPKQI 
Sbjct: 181  LAEIAVKAVLAVADLARKDVNLDLIKVEGKVGGKLEDTELIYGIVVDKDMSHPQMPKQIE 240

Query: 827  NAKIAILTCPFEPPKPKTKHKVDIDSVEKFQTLRLQEQKYFDDMVQKCKDVGATLVICQW 1006
            +AKIAILTCPFEPPKPKTKHKVDID+VEKFQTLRLQEQKYFDDMVQKCKDVGATLVICQW
Sbjct: 241  DAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRLQEQKYFDDMVQKCKDVGATLVICQW 300

Query: 1007 GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTAEKLGKAGLVREKSF 1186
            GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQEL+ EKLGKAG+VREKSF
Sbjct: 301  GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELSPEKLGKAGMVREKSF 360

Query: 1187 GTTKERMLYIEECANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGS 1366
            GTTK+RMLYIE CANSRAVTIFIRGGNKM+IEETKRS+HDALCVARNLIRNNSIVYGGGS
Sbjct: 361  GTTKDRMLYIEHCANSRAVTIFIRGGNKMIIEETKRSLHDALCVARNLIRNNSIVYGGGS 420

Query: 1367 AEIACSIAVEAAADRYPGVEQYAIRAFADALDSIPMALAENSGLQPIETLSAVKSQQIKE 1546
            AEI+CSIAVEAAADRYPGVEQYAIRAF DAL++IPMALAENSGLQPIETLSAVKSQQIK+
Sbjct: 421  AEISCSIAVEAAADRYPGVEQYAIRAFGDALEAIPMALAENSGLQPIETLSAVKSQQIKD 480

Query: 1547 NNSYFGIDCNDVGTNDMCKQNVFETLIGKQQQILLATQVVKMILKIDDIISPSDF 1711
            NN +FGIDCNDVGTNDM +QNVFETLIGKQQQ+LLATQVVKMILKIDD+ISPS++
Sbjct: 481  NNPHFGIDCNDVGTNDMREQNVFETLIGKQQQLLLATQVVKMILKIDDVISPSEY 535


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