BLASTX nr result

ID: Coptis24_contig00002511 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002511
         (1008 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528825.1| structural molecule, putative [Ricinus commu...   299   8e-79
ref|XP_002312588.1| predicted protein [Populus trichocarpa] gi|2...   295   9e-78
gb|ABK93378.1| unknown [Populus trichocarpa]                          295   9e-78
ref|XP_002285326.1| PREDICTED: probable plastid-lipid-associated...   293   6e-77
gb|AAR26489.1| harpin binding protein 1 [Vitis sp. NL-2003]           293   6e-77

>ref|XP_002528825.1| structural molecule, putative [Ricinus communis]
           gi|223531737|gb|EEF33559.1| structural molecule,
           putative [Ricinus communis]
          Length = 285

 Score =  299 bits (765), Expect = 8e-79
 Identities = 155/235 (65%), Positives = 176/235 (74%), Gaps = 12/235 (5%)
 Frame = +2

Query: 155 LKSALGDSPVLERPPKPP------------KVLYPELKFKLLSAVSGLNKGLXXXXXXXX 298
           +KSAL + PVL+ PP PP              L   LK KLLS VSGLN+GL        
Sbjct: 52  VKSALDEVPVLDPPPPPPPPPPPFGNERENNKLVASLKLKLLSIVSGLNRGLAASEDDLQ 111

Query: 299 XXXXXXXXXXXXGGLVDLSTDLDKLQGRWKLTYSSAFSSRTLGGSRPGPQLGRLLPITLG 478
                       GGLVDLS D+DKLQGRWKL YSSAFSSRTLGGSRPGP  GRLLPITLG
Sbjct: 112 KADAAAKELEAVGGLVDLSNDIDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLG 171

Query: 479 QVFQRIDILSKDFDNIVELQLGTLWPFPPIEVTATLAHKFELIGSAVIKIVYKKTSIKTT 658
           QVFQRID+L+KDFDNIVELQLG  WP PP+EVTATLAHKFELIGSA +KI ++KT++KTT
Sbjct: 172 QVFQRIDVLNKDFDNIVELQLGAPWPLPPVEVTATLAHKFELIGSAKVKITFEKTTVKTT 231

Query: 659 GTLSQLQPFELPQLPEAIRPSSNNRGRGEFEVTYIDADTRITRGDRGELRVFVIS 823
           G LSQL P E+P++P+A+RP SN  G G+FEVTY+DADTRITRGDRGELRVFVI+
Sbjct: 232 GNLSQLPPLEIPRIPDALRPPSNT-GSGDFEVTYVDADTRITRGDRGELRVFVIA 285


>ref|XP_002312588.1| predicted protein [Populus trichocarpa] gi|222852408|gb|EEE89955.1|
           predicted protein [Populus trichocarpa]
          Length = 287

 Score =  295 bits (756), Expect = 9e-78
 Identities = 155/241 (64%), Positives = 179/241 (74%), Gaps = 8/241 (3%)
 Frame = +2

Query: 125 FTHSKRNKLTLKSALGDSPVLERPPKPPKVLYPE--------LKFKLLSAVSGLNKGLXX 280
           +TH ++  + L+SAL +  VL+ PP  P   Y E        LK KLLS VSGLN+GL  
Sbjct: 51  YTHHRQRSVVLRSALDEIYVLDPPPSSP---YEEGKTEPIASLKLKLLSVVSGLNRGLAA 107

Query: 281 XXXXXXXXXXXXXXXXXXGGLVDLSTDLDKLQGRWKLTYSSAFSSRTLGGSRPGPQLGRL 460
                             GGLVDLS D+DKLQGRWKL YSSAFSSRTLGGSRPGP  GRL
Sbjct: 108 SEDDQQKADAAAKDLEAAGGLVDLSKDIDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRL 167

Query: 461 LPITLGQVFQRIDILSKDFDNIVELQLGTLWPFPPIEVTATLAHKFELIGSAVIKIVYKK 640
           LPITLGQVFQRID+LSKDFDNIVEL+LG  WP  P+EVTATLAHKFELIGSA IKI ++K
Sbjct: 168 LPITLGQVFQRIDVLSKDFDNIVELELGAPWPLQPVEVTATLAHKFELIGSAKIKITFEK 227

Query: 641 TSIKTTGTLSQLQPFELPQLPEAIRPSSNNRGRGEFEVTYIDADTRITRGDRGELRVFVI 820
           T++KTTG LSQL P E+P++P+A+RP SN  G GEFEVTY+DADTR+TRGDR ELRVFV+
Sbjct: 228 TTVKTTGNLSQLPPLEVPRIPDALRPPSNT-GSGEFEVTYLDADTRVTRGDRSELRVFVL 286

Query: 821 S 823
           S
Sbjct: 287 S 287


>gb|ABK93378.1| unknown [Populus trichocarpa]
          Length = 287

 Score =  295 bits (756), Expect = 9e-78
 Identities = 155/241 (64%), Positives = 179/241 (74%), Gaps = 8/241 (3%)
 Frame = +2

Query: 125 FTHSKRNKLTLKSALGDSPVLERPPKPPKVLYPE--------LKFKLLSAVSGLNKGLXX 280
           +TH ++  + L+SAL +  VL+ PP  P   Y E        LK KLLS VSGLN+GL  
Sbjct: 51  YTHHRQRSVVLRSALDEIYVLDPPPSSP---YEEGKTEPIASLKLKLLSVVSGLNRGLAA 107

Query: 281 XXXXXXXXXXXXXXXXXXGGLVDLSTDLDKLQGRWKLTYSSAFSSRTLGGSRPGPQLGRL 460
                             GGLVDLS D+DKLQGRWKL YSSAFSSRTLGGSRPGP  GRL
Sbjct: 108 SEDDQQKADAAAKDLEAAGGLVDLSKDIDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRL 167

Query: 461 LPITLGQVFQRIDILSKDFDNIVELQLGTLWPFPPIEVTATLAHKFELIGSAVIKIVYKK 640
           LPITLGQVFQRID+LSKDFDNIVEL+LG  WP  P+EVTATLAHKFELIGSA IKI ++K
Sbjct: 168 LPITLGQVFQRIDVLSKDFDNIVELELGAPWPLQPVEVTATLAHKFELIGSAKIKITFEK 227

Query: 641 TSIKTTGTLSQLQPFELPQLPEAIRPSSNNRGRGEFEVTYIDADTRITRGDRGELRVFVI 820
           T++KTTG LSQL P E+P++P+A+RP SN  G GEFEVTY+DADTR+TRGDR ELRVFV+
Sbjct: 228 TTVKTTGNLSQLPPLEVPRIPDALRPPSNT-GSGEFEVTYLDADTRVTRGDRNELRVFVL 286

Query: 821 S 823
           S
Sbjct: 287 S 287


>ref|XP_002285326.1| PREDICTED: probable plastid-lipid-associated protein 6,
           chloroplastic [Vitis vinifera]
           gi|296083683|emb|CBI23672.3| unnamed protein product
           [Vitis vinifera]
          Length = 293

 Score =  293 bits (749), Expect = 6e-77
 Identities = 155/249 (62%), Positives = 182/249 (73%), Gaps = 6/249 (2%)
 Frame = +2

Query: 95  RQYIHSVPKKFTHSK---RNKLTLKSALGDSPVLERPPKPPKV---LYPELKFKLLSAVS 256
           R+ + +  K +T +    +    L+S L +  VL+ PP P      L   LK KLLSAVS
Sbjct: 46  RRRLRTTSKPYTWTSGLPKRSFVLRSTLDEVSVLDPPPPPEDSTADLLSSLKLKLLSAVS 105

Query: 257 GLNKGLXXXXXXXXXXXXXXXXXXXXGGLVDLSTDLDKLQGRWKLTYSSAFSSRTLGGSR 436
           GLN+GL                    GG VDLS DLDKLQGRWKL YSSAFSSRTLGGSR
Sbjct: 106 GLNRGLAAIEDDLQKADAAAKELEAAGGTVDLSIDLDKLQGRWKLIYSSAFSSRTLGGSR 165

Query: 437 PGPQLGRLLPITLGQVFQRIDILSKDFDNIVELQLGTLWPFPPIEVTATLAHKFELIGSA 616
           PGP  GRLLPITLGQVFQRIDI+SKDFDNIV+LQ+G  WP PPIE+TATLAHKFELIG++
Sbjct: 166 PGPPTGRLLPITLGQVFQRIDIVSKDFDNIVDLQIGAPWPLPPIELTATLAHKFELIGTS 225

Query: 617 VIKIVYKKTSIKTTGTLSQLQPFELPQLPEAIRPSSNNRGRGEFEVTYIDADTRITRGDR 796
            IKI ++KT++KTTG LSQL P E+P++P+A+RP SN  G GEFEVTY+DADTRITRGDR
Sbjct: 226 SIKITFEKTTVKTTGNLSQLPPLEVPRIPDALRPPSNT-GSGEFEVTYLDADTRITRGDR 284

Query: 797 GELRVFVIS 823
           GELRVFVI+
Sbjct: 285 GELRVFVIA 293


>gb|AAR26489.1| harpin binding protein 1 [Vitis sp. NL-2003]
          Length = 291

 Score =  293 bits (749), Expect = 6e-77
 Identities = 155/249 (62%), Positives = 182/249 (73%), Gaps = 6/249 (2%)
 Frame = +2

Query: 95  RQYIHSVPKKFTHSK---RNKLTLKSALGDSPVLERPPKPPKV---LYPELKFKLLSAVS 256
           R+ + +  K +T +    +    L+S L +  VL+ PP P      L   LK KLLSAVS
Sbjct: 44  RRRLRTTSKPYTWTSGLPKRSFVLRSTLDEVSVLDPPPPPEDSTADLLSSLKLKLLSAVS 103

Query: 257 GLNKGLXXXXXXXXXXXXXXXXXXXXGGLVDLSTDLDKLQGRWKLTYSSAFSSRTLGGSR 436
           GLN+GL                    GG VDLS DLDKLQGRWKL YSSAFSSRTLGGSR
Sbjct: 104 GLNRGLAAIEDDLQKADAAAKELEAAGGTVDLSIDLDKLQGRWKLIYSSAFSSRTLGGSR 163

Query: 437 PGPQLGRLLPITLGQVFQRIDILSKDFDNIVELQLGTLWPFPPIEVTATLAHKFELIGSA 616
           PGP  GRLLPITLGQVFQRIDI+SKDFDNIV+LQ+G  WP PPIE+TATLAHKFELIG++
Sbjct: 164 PGPPTGRLLPITLGQVFQRIDIVSKDFDNIVDLQIGVPWPLPPIELTATLAHKFELIGTS 223

Query: 617 VIKIVYKKTSIKTTGTLSQLQPFELPQLPEAIRPSSNNRGRGEFEVTYIDADTRITRGDR 796
            IKI ++KT++KTTG LSQL P E+P++P+A+RP SN  G GEFEVTY+DADTRITRGDR
Sbjct: 224 SIKITFEKTTVKTTGNLSQLPPLEVPRIPDALRPPSNT-GSGEFEVTYLDADTRITRGDR 282

Query: 797 GELRVFVIS 823
           GELRVFVI+
Sbjct: 283 GELRVFVIA 291


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