BLASTX nr result
ID: Coptis24_contig00002433
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00002433
(1504 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 322 2e-85
ref|XP_002329779.1| predicted protein [Populus trichocarpa] gi|2... 317 5e-84
ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containi... 313 8e-83
ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containi... 313 8e-83
ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containi... 310 6e-82
>ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33760-like [Vitis vinifera]
Length = 561
Score = 322 bits (824), Expect = 2e-85
Identities = 152/224 (67%), Positives = 180/224 (80%)
Frame = +1
Query: 1 AGFLNEAFQYIEESFHGKPPAAVCTAMLGACKMHKKYELGVQVAEHLLTIEPDNPGHYVL 180
AGFLNEAFQYI++ G+ A+ TAMLGACKMHK +LGVQVAEHLL EP+NP HYVL
Sbjct: 338 AGFLNEAFQYIKDLKQGEQAPALWTAMLGACKMHKNLDLGVQVAEHLLAAEPENPSHYVL 397
Query: 181 LSNIYALAGRMDRVEVIRKLMRRKGLKKQVGYTVIEVDNVSHMFCLGDTSHPHTAEIYKY 360
LSN+YALAGRM+RVE++R +M RKGLKKQVGY++IEV S++F +GD SHP T EIYKY
Sbjct: 398 LSNVYALAGRMERVEMVRNMMIRKGLKKQVGYSIIEVGQKSYLFSMGDRSHPETTEIYKY 457
Query: 361 LENLMWKCKQAGYIPETDSMMHDLXXXXXXFALRFHSEKLAIAFGLMKTSQGSTIRIIKN 540
L+ LM + K+AGY+P + +MH+L +ALR+HSEKLAIAFGLMKTS G TIRI+KN
Sbjct: 458 LDELMLRSKEAGYVPAPELVMHELEEEEREYALRYHSEKLAIAFGLMKTSHGMTIRIVKN 517
Query: 541 LRMCDDCHSTIKFISTVTCREIIVRDKHRFHHFTEGSCSCLDYW 672
LRMC+DCHS IKFIS + REIIVRDK RFHHF G CSC DYW
Sbjct: 518 LRMCEDCHSAIKFISNIANREIIVRDKLRFHHFKNGLCSCQDYW 561
>ref|XP_002329779.1| predicted protein [Populus trichocarpa] gi|222870841|gb|EEF07972.1|
predicted protein [Populus trichocarpa]
Length = 585
Score = 317 bits (812), Expect = 5e-84
Identities = 146/224 (65%), Positives = 178/224 (79%)
Frame = +1
Query: 1 AGFLNEAFQYIEESFHGKPPAAVCTAMLGACKMHKKYELGVQVAEHLLTIEPDNPGHYVL 180
AG L+EA+ +I+E P A+ TAMLGACKMHK ++LG QVAEHLL EP+NP HYV+
Sbjct: 362 AGLLDEAYNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVI 421
Query: 181 LSNIYALAGRMDRVEVIRKLMRRKGLKKQVGYTVIEVDNVSHMFCLGDTSHPHTAEIYKY 360
LSNIYALAGRMD+VE++R M RK LKKQVGY+ +EVD +++F +GD SH T IY Y
Sbjct: 422 LSNIYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHY 481
Query: 361 LENLMWKCKQAGYIPETDSMMHDLXXXXXXFALRFHSEKLAIAFGLMKTSQGSTIRIIKN 540
L+ LMWKC +AGY+P +DS+MH+L +ALR+HSEKLAIAFGL+KTS G+ IRI+KN
Sbjct: 482 LDELMWKCSEAGYVPVSDSVMHELEEEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKN 541
Query: 541 LRMCDDCHSTIKFISTVTCREIIVRDKHRFHHFTEGSCSCLDYW 672
LRMC+DCHS IKFIS ++ REIIVRDK RFHHF GSCSCLDYW
Sbjct: 542 LRMCEDCHSAIKFISAISSREIIVRDKLRFHHFKVGSCSCLDYW 585
>ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like
[Cucumis sativus]
Length = 663
Score = 313 bits (802), Expect = 8e-83
Identities = 139/224 (62%), Positives = 185/224 (82%)
Frame = +1
Query: 1 AGFLNEAFQYIEESFHGKPPAAVCTAMLGACKMHKKYELGVQVAEHLLTIEPDNPGHYVL 180
AG LN+A+Q+I++ +P AV T+MLGAC+MH+ ++LGV+VAEH+L++EP+NPGHYV+
Sbjct: 440 AGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVM 499
Query: 181 LSNIYALAGRMDRVEVIRKLMRRKGLKKQVGYTVIEVDNVSHMFCLGDTSHPHTAEIYKY 360
LSNIYALAGRMDRVE++R +M R+ LKKQVGY+ IE++ +++F +GD SHP T IY+Y
Sbjct: 500 LSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRY 559
Query: 361 LENLMWKCKQAGYIPETDSMMHDLXXXXXXFALRFHSEKLAIAFGLMKTSQGSTIRIIKN 540
L+ LM +C ++GY+P +S+MHDL +ALR+HSEKLA+AFGL+KT+QG TIRI+KN
Sbjct: 560 LDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKN 619
Query: 541 LRMCDDCHSTIKFISTVTCREIIVRDKHRFHHFTEGSCSCLDYW 672
LR+C+DCHS IK IS + REIIVRDK RFHHF +GSCSCLDYW
Sbjct: 620 LRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 663
>ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like
[Cucumis sativus]
Length = 599
Score = 313 bits (802), Expect = 8e-83
Identities = 139/224 (62%), Positives = 185/224 (82%)
Frame = +1
Query: 1 AGFLNEAFQYIEESFHGKPPAAVCTAMLGACKMHKKYELGVQVAEHLLTIEPDNPGHYVL 180
AG LN+A+Q+I++ +P AV T+MLGAC+MH+ ++LGV+VAEH+L++EP+NPGHYV+
Sbjct: 376 AGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVM 435
Query: 181 LSNIYALAGRMDRVEVIRKLMRRKGLKKQVGYTVIEVDNVSHMFCLGDTSHPHTAEIYKY 360
LSNIYALAGRMDRVE++R +M R+ LKKQVGY+ IE++ +++F +GD SHP T IY+Y
Sbjct: 436 LSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRY 495
Query: 361 LENLMWKCKQAGYIPETDSMMHDLXXXXXXFALRFHSEKLAIAFGLMKTSQGSTIRIIKN 540
L+ LM +C ++GY+P +S+MHDL +ALR+HSEKLA+AFGL+KT+QG TIRI+KN
Sbjct: 496 LDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKN 555
Query: 541 LRMCDDCHSTIKFISTVTCREIIVRDKHRFHHFTEGSCSCLDYW 672
LR+C+DCHS IK IS + REIIVRDK RFHHF +GSCSCLDYW
Sbjct: 556 LRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 599
>ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like
[Glycine max]
Length = 582
Score = 310 bits (794), Expect = 6e-82
Identities = 145/223 (65%), Positives = 178/223 (79%)
Frame = +1
Query: 4 GFLNEAFQYIEESFHGKPPAAVCTAMLGACKMHKKYELGVQVAEHLLTIEPDNPGHYVLL 183
G LNEA+Q++ + AV TAMLGACKMHK ++LGV+VAE+L++ EP+NPGHYVLL
Sbjct: 360 GLLNEAYQFVRGLSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLL 419
Query: 184 SNIYALAGRMDRVEVIRKLMRRKGLKKQVGYTVIEVDNVSHMFCLGDTSHPHTAEIYKYL 363
SN+YALAGRMDRVE +R +M ++GLKKQVGY+ I+V+N S++F +GD SHP T EIY YL
Sbjct: 420 SNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYL 479
Query: 364 ENLMWKCKQAGYIPETDSMMHDLXXXXXXFALRFHSEKLAIAFGLMKTSQGSTIRIIKNL 543
+ LMW+CK AGY P +S MH+L +ALR+HSEKLA+AFGLMKT G T+RI+KNL
Sbjct: 480 DELMWRCKDAGYAPAPESAMHELEEEEREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNL 539
Query: 544 RMCDDCHSTIKFISTVTCREIIVRDKHRFHHFTEGSCSCLDYW 672
R+C+DCHS IKFIS V REIIVRDK RFHHF EGSCSC DYW
Sbjct: 540 RICEDCHSAIKFISVVMNREIIVRDKLRFHHFREGSCSCSDYW 582