BLASTX nr result

ID: Coptis24_contig00002357 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002357
         (1185 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279406.1| PREDICTED: uncharacterized protein LOC100249...   212   1e-52
emb|CAN72576.1| hypothetical protein VITISV_004233 [Vitis vinifera]   197   6e-48
ref|XP_002516441.1| conserved hypothetical protein [Ricinus comm...   177   6e-42
ref|XP_003544535.1| PREDICTED: uncharacterized protein LOC100775...   170   6e-40
ref|XP_002324174.1| predicted protein [Populus trichocarpa] gi|2...   168   2e-39

>ref|XP_002279406.1| PREDICTED: uncharacterized protein LOC100249297 [Vitis vinifera]
          Length = 249

 Score =  212 bits (540), Expect = 1e-52
 Identities = 129/258 (50%), Positives = 160/258 (62%), Gaps = 10/258 (3%)
 Frame = +3

Query: 198 MLEES--IPAVWASMNSWFTPTLLFVFLNLMIGTIAVASGGFGTQKQNRENNNDNQQP-G 368
           M EES  IP++WASMNSWFTP +LF+ LNLMIGTI V S G GTQ+ +++  + +Q P  
Sbjct: 1   MFEESMSIPSIWASMNSWFTPAVLFLLLNLMIGTIFVTS-GLGTQRPHQQPRDSSQDPQP 59

Query: 369 QLLRSPSLLQRVKSINLYRYKSQELNPFSSITTTTLQPSELEHTQQVLDTFNIPHDDK-Q 545
           QL RSPS+LQR+KSIN Y Y+SQE         TT+ PS  E   +    F + H  + +
Sbjct: 60  QLPRSPSVLQRLKSINFYSYRSQE--------PTTVTPSIAEKLPEQDTRFALRHTHQPE 111

Query: 546 HTGQFPYENLDENHH----LPMDETYHNIEDHHVTRTLSDTKPASGDIPVXXXXXXXXXX 713
              +   E   E+H       +DE Y  I+     RT SD +PASG+ PV          
Sbjct: 112 PEPELEREPEPESHEGESPKTLDEIYGQIQGRPFERTKSDQEPASGETPVRLSKKMKKSA 171

Query: 714 XXXXAFAHFGEQEVVQVTRPATVREGKSSTSQSFG--DDEEVDAKADDFINKFKNQLKLQ 887
                FAHF E ++V+  RPATVREGK+  + + G  DDEEVDAKADDFINKFK QLKLQ
Sbjct: 172 SAKSTFAHFEEGDIVESRRPATVREGKAKATVAEGDEDDEEVDAKADDFINKFKQQLKLQ 231

Query: 888 RLDSIIRYKEMLGRGADK 941
           RLDSIIRYKEM+GRG  K
Sbjct: 232 RLDSIIRYKEMIGRGTGK 249


>emb|CAN72576.1| hypothetical protein VITISV_004233 [Vitis vinifera]
          Length = 306

 Score =  197 bits (500), Expect = 6e-48
 Identities = 120/244 (49%), Positives = 149/244 (61%), Gaps = 8/244 (3%)
 Frame = +3

Query: 234 MNSWFTPTLLFVFLNLMIGTIAVASGGFGTQKQNRENNNDNQQPG-QLLRSPSLLQRVKS 410
           MNSWFTP +LF+ LNLMIGTI V SG  GTQ+ +++  + +Q P  QL RSPS+LQR+KS
Sbjct: 1   MNSWFTPAVLFLLLNLMIGTIFVTSG-LGTQRPHQQPRDSSQDPQPQLPRSPSVLQRLKS 59

Query: 411 INLYRYKSQELNPFSSITTTTLQPSELEHTQQVLDTFNIPHDDK-QHTGQFPYENLDENH 587
           IN Y Y+SQE         TT+ PS  E   +    F + H  + +   +   E   E+H
Sbjct: 60  INFYSYRSQE--------PTTVTPSIAEKLPEQDTRFALRHTHQPEPEPELEREPEPESH 111

Query: 588 H----LPMDETYHNIEDHHVTRTLSDTKPASGDIPVXXXXXXXXXXXXXXAFAHFGEQEV 755
                  +DE Y  I+     RT SD +PASG+ PV               FAHF E ++
Sbjct: 112 EGESPKTLDEIYGQIQGRPFERTKSDQEPASGETPVRLSKKMKKSASAKSTFAHFEEGDI 171

Query: 756 VQVTRPATVREGKSSTSQSFGD--DEEVDAKADDFINKFKNQLKLQRLDSIIRYKEMLGR 929
           V+  RPATVREGK+  + + GD  DEEVDAKADDFINKFK QLKLQRLDSIIRYKEM+GR
Sbjct: 172 VESRRPATVREGKAKATVAEGDEDDEEVDAKADDFINKFKQQLKLQRLDSIIRYKEMIGR 231

Query: 930 GADK 941
           G  K
Sbjct: 232 GTGK 235


>ref|XP_002516441.1| conserved hypothetical protein [Ricinus communis]
           gi|223544261|gb|EEF45782.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 316

 Score =  177 bits (448), Expect = 6e-42
 Identities = 122/316 (38%), Positives = 163/316 (51%), Gaps = 72/316 (22%)
 Frame = +3

Query: 198 MLEES---IPAVWASMNSWFTPTLLFVFLNLMIGTIAVASGGFGTQKQNRENNNDNQQPG 368
           M EES   IP++WASMNSWFTPT+LF+FLNLMIGTI V S    TQK ++E+        
Sbjct: 1   MFEESVTSIPSIWASMNSWFTPTVLFLFLNLMIGTIYVTSS-LATQKPHQEDKQLQAHHH 59

Query: 369 QLLRSPSLLQRVKSINLYRYKSQELNPF----------SSITTTTLQPSELEHTQQ---- 506
           Q+ RSPS+LQR+KSIN + Y+S E              SS T  + Q S LE   Q    
Sbjct: 60  QIARSPSVLQRLKSINFHSYRSPEPTTVTLEKTHQFDNSSNTPFSFQQSPLEEYHQNQPF 119

Query: 507 ------------VLDTFN-----IPHDDKQHTGQF-----------PYENLDE------- 581
                        ++ +N     +P++ + HT              P+++L +       
Sbjct: 120 LSRSPSMLQRIKSINLYNYFSQELPNNQETHTSATTAITTTITHFTPHQDLQQEQEQLQE 179

Query: 582 ------------------NHHLPMDETYHNIEDHH-VTRTLSDTKPASGDIPVXXXXXXX 704
                             +    +DE Y  ++++  V+R+ SDT P SG++P        
Sbjct: 180 QQVEEKEEELEESEDKIQDQEQTLDEIYSKLKNNSKVSRSKSDTNPTSGEVPKKLSKKMK 239

Query: 705 XXXXXXXAFAHFGEQE-VVQVTRPATVREGKSSTSQSFGDDEEVDAKADDFINKFKNQLK 881
                  AFAHF E + +V+  RPATVREGKS    +  DD EVDAKADDFIN+FK QLK
Sbjct: 240 KSASAKSAFAHFEEDDDIVESRRPATVREGKSGHKMTEVDDAEVDAKADDFINRFKQQLK 299

Query: 882 LQRLDSIIRYKEMLGR 929
           LQR+DSIIRYKE + R
Sbjct: 300 LQRIDSIIRYKEKVNR 315


>ref|XP_003544535.1| PREDICTED: uncharacterized protein LOC100775337 [Glycine max]
          Length = 318

 Score =  170 bits (431), Expect = 6e-40
 Identities = 124/327 (37%), Positives = 160/327 (48%), Gaps = 79/327 (24%)
 Frame = +3

Query: 198 MLEESI---PAVWASMNSWFTPTLLFVFLNLMIGTIAVASGGFGTQKQNRE--------- 341
           ML+ES+   P    S+ SWFTPT+ F+ L L+IGTI + S    T K  ++         
Sbjct: 1   MLDESVSSTPTFLGSLYSWFTPTVFFLLLQLVIGTIFIISNLANTHKHQQQEPQQAHDFP 60

Query: 342 ------------------------------------NNNDNQQPGQLLRSPSLLQRVKSI 413
                                               N ++N+QP QL RSPS+LQR+KSI
Sbjct: 61  HHHLPRSPSMLQRLKSINFYPSSPFRSQDLQNPHFHNAHENEQP-QLARSPSVLQRLKSI 119

Query: 414 NLYRYKSQELNPFSSITTTTLQPSELEHT------QQVLDTFNIPHDDKQHTGQFPYENL 575
           NLY Y   E  PF+S  T      E  +       QQV++T     D+++  G   Y   
Sbjct: 120 NLYSYFPTE--PFTSKLTPDQHVPEKPYVREQNQPQQVVET-----DEEKEEGYDDYVVE 172

Query: 576 DENHHL---------------------PMDETYHNIEDH----HVTRTLSDTKPASGDIP 680
           D+N+ +                      +DE Y  ++      H  RT SDTKPASG++P
Sbjct: 173 DDNNIIMSTHNYNYNLGVSEEGGAGSSSLDEIYCKLQQQGQEGHFERTHSDTKPASGEVP 232

Query: 681 VXXXXXXXXXXXXXXAFAHFGEQEVVQVTRPATVREGKSSTSQSFGDDEEVDAKADDFIN 860
           V              AF+HF E ++V+  RPATVRE K  T  +  DD EVDAKADDFIN
Sbjct: 233 VKLPRKMKKSASSKSAFSHFKEDDIVETRRPATVREAKV-TGGAAEDDAEVDAKADDFIN 291

Query: 861 KFKNQLKLQRLDSIIRYKEMLGRGADK 941
           KFK QLKLQRLDSIIRYKEM+GRG+ K
Sbjct: 292 KFKQQLKLQRLDSIIRYKEMIGRGSAK 318


>ref|XP_002324174.1| predicted protein [Populus trichocarpa] gi|222865608|gb|EEF02739.1|
           predicted protein [Populus trichocarpa]
          Length = 315

 Score =  168 bits (426), Expect = 2e-39
 Identities = 118/320 (36%), Positives = 161/320 (50%), Gaps = 74/320 (23%)
 Frame = +3

Query: 198 MLEESIPAVWASMNSWFTPTLLFVFLNLMIGTIAVASGGFGTQK---QNRENNNDNQQPG 368
           MLEES+ ++WASM+SWFTPT+LFV LNLMIGTI + S    T K   Q++E     Q   
Sbjct: 1   MLEESM-SIWASMSSWFTPTVLFVLLNLMIGTIFITS-SIATHKPSDQHQEQERHVQAQN 58

Query: 369 ----------QLLRSPSLLQRVKSINLYRYKSQELNPFS-----------SITTTTLQPS 485
                     QL RSPS+LQR+KSIN Y Y+SQE   F+           ++   T Q  
Sbjct: 59  GHGLGLGHGHQLARSPSVLQRLKSINFYSYRSQEPTTFTFEKPQESDQHFTLHQQTPQQG 118

Query: 486 ELEHTQQ----------------------------VLDTFNIPHDDKQ-----HTGQFPY 566
              H  Q                            +  T    H D++      T Q  Y
Sbjct: 119 YQYHQNQNQPPISRSPSMLQRLKSINLYNYFSQEPINPTITNNHKDQETTAAHFTSQQMY 178

Query: 567 ENLDE-----------------NHHLPMDETYHNIEDHHVTRTLSDTKPASGDIPVXXXX 695
            ++ E                 +    ++E Y  ++ + ++++ SDTKP SG++P     
Sbjct: 179 GHIQELDGQLQEQQEEEEEEEEDQEQTLEEIYSKLQGNKLSKSKSDTKPTSGEVPKKLPK 238

Query: 696 XXXXXXXXXXAFAHFGEQEVVQVTRPATVREGKSSTSQSFGDDEEVDAKADDFINKFKNQ 875
                     AFAHF E ++V+  RPATV+EGK+ST     DD EVDAKADDFIN+FK Q
Sbjct: 239 KMKKSASAKSAFAHFEEDDIVESRRPATVKEGKTSTE---FDDTEVDAKADDFINRFKQQ 295

Query: 876 LKLQRLDSIIRYKEMLGRGA 935
           LKLQR++SI++YKEM+ RG+
Sbjct: 296 LKLQRMNSIMKYKEMITRGS 315


Top