BLASTX nr result
ID: Coptis24_contig00002349
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00002349
(875 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002522167.1| pentatricopeptide repeat-containing protein,... 295 9e-78
ref|XP_002308888.1| predicted protein [Populus trichocarpa] gi|2... 287 2e-75
emb|CBI30135.3| unnamed protein product [Vitis vinifera] 278 9e-73
ref|XP_002266581.1| PREDICTED: pentatricopeptide repeat-containi... 278 9e-73
ref|XP_002322619.1| predicted protein [Populus trichocarpa] gi|2... 278 2e-72
>ref|XP_002522167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223538605|gb|EEF40208.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 342
Score = 295 bits (755), Expect = 9e-78
Identities = 137/195 (70%), Positives = 170/195 (87%)
Frame = +1
Query: 1 ECLAAIEAWGKVGKVEEAEAVFDRMTQTWKKLSSRNYTTLLKVYANHKMLTKGKDLAKRM 180
EC+A IEAWGK+ K+++AE VF+RM TWKKLSSR+Y+ LLKVYA+HKML GKDL K+M
Sbjct: 148 ECVAVIEAWGKLKKIDKAEEVFNRMLTTWKKLSSRHYSALLKVYASHKMLANGKDLIKKM 207
Query: 181 AESGQRLDPFTWDALVKLYVEAGEVEKADSILQKSSQQNQLKPMFSSYMYIMEQYAKRGD 360
A+SG R+ P TWD+LVKLYVEAGEVEKADS+L K++QQN +KPMFSSY+ IM+QYAKRGD
Sbjct: 208 ADSGCRIGPLTWDSLVKLYVEAGEVEKADSVLHKAAQQNHMKPMFSSYIVIMDQYAKRGD 267
Query: 361 VHNAEKIFNRLKQSGYVGRLRQYSALLDTYVKAKVPAYGFRDRMKGDNIFPNKPMQAKLA 540
VHNAEK+F+R++Q+GYV RLRQ+ AL+ TY+ AK PAYG R+RMK DNIFPNK + A+LA
Sbjct: 268 VHNAEKMFHRMRQAGYVARLRQFQALVQTYINAKAPAYGIRERMKADNIFPNKALAAQLA 327
Query: 541 KVDAFRKTAISDILD 585
VDAFRKTA++D+LD
Sbjct: 328 LVDAFRKTAVTDLLD 342
>ref|XP_002308888.1| predicted protein [Populus trichocarpa] gi|222854864|gb|EEE92411.1|
predicted protein [Populus trichocarpa]
Length = 555
Score = 287 bits (735), Expect = 2e-75
Identities = 131/195 (67%), Positives = 170/195 (87%)
Frame = +1
Query: 1 ECLAAIEAWGKVGKVEEAEAVFDRMTQTWKKLSSRNYTTLLKVYANHKMLTKGKDLAKRM 180
EC+AAIEAWG++ K++EAEAVF+ M++TWKKLSSR+Y+TLLKVYANHKML+KGKDL KRM
Sbjct: 361 ECMAAIEAWGRLKKIDEAEAVFELMSKTWKKLSSRHYSTLLKVYANHKMLSKGKDLIKRM 420
Query: 181 AESGQRLDPFTWDALVKLYVEAGEVEKADSILQKSSQQNQLKPMFSSYMYIMEQYAKRGD 360
+SG R+ P TWDALVKLYVEAGEVEKADSIL K+ QQN++KPM+SS++ IME+YA +GD
Sbjct: 421 GDSGCRIGPLTWDALVKLYVEAGEVEKADSILNKAVQQNKIKPMYSSFLIIMERYATKGD 480
Query: 361 VHNAEKIFNRLKQSGYVGRLRQYSALLDTYVKAKVPAYGFRDRMKGDNIFPNKPMQAKLA 540
+HNAEK+F+R++Q+GY R+RQ+ L+ Y+ AK P YG R+R+K D IFPNK + A+LA
Sbjct: 481 IHNAEKMFHRMRQAGYQARIRQFQTLIQAYIIAKAPCYGMRERLKADGIFPNKSLAAQLA 540
Query: 541 KVDAFRKTAISDILD 585
+VDAFR+TA+SD+LD
Sbjct: 541 QVDAFRRTAVSDLLD 555
>emb|CBI30135.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 278 bits (712), Expect = 9e-73
Identities = 130/195 (66%), Positives = 171/195 (87%)
Frame = +1
Query: 1 ECLAAIEAWGKVGKVEEAEAVFDRMTQTWKKLSSRNYTTLLKVYANHKMLTKGKDLAKRM 180
E +AAIEA+GK+ KVEEAEA+F++M++T+K+LSS++Y+ LLKVYA+HKML KGKDL K+M
Sbjct: 430 EFVAAIEAYGKLKKVEEAEAIFNKMSKTFKRLSSKHYSALLKVYADHKMLIKGKDLVKQM 489
Query: 181 AESGQRLDPFTWDALVKLYVEAGEVEKADSILQKSSQQNQLKPMFSSYMYIMEQYAKRGD 360
++SG R+ P TWDALVKLYVEAGEVEKAD ILQK+ QQ+ +KPMFS+YM IM+QYAKRGD
Sbjct: 490 SDSGCRIGPLTWDALVKLYVEAGEVEKADKILQKAMQQSPIKPMFSTYMAIMDQYAKRGD 549
Query: 361 VHNAEKIFNRLKQSGYVGRLRQYSALLDTYVKAKVPAYGFRDRMKGDNIFPNKPMQAKLA 540
+HN+EK+F++++QSGYV RLRQ+ L+ YV AK PAYG ++RMK DNIFPN+ + +LA
Sbjct: 550 IHNSEKMFHQMRQSGYVSRLRQFQCLIQAYVNAKAPAYGIKERMKADNIFPNRVVAGQLA 609
Query: 541 KVDAFRKTAISDILD 585
+VDAFRK+A+SD+LD
Sbjct: 610 QVDAFRKSAVSDLLD 624
>ref|XP_002266581.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Vitis vinifera]
Length = 587
Score = 278 bits (712), Expect = 9e-73
Identities = 130/195 (66%), Positives = 171/195 (87%)
Frame = +1
Query: 1 ECLAAIEAWGKVGKVEEAEAVFDRMTQTWKKLSSRNYTTLLKVYANHKMLTKGKDLAKRM 180
E +AAIEA+GK+ KVEEAEA+F++M++T+K+LSS++Y+ LLKVYA+HKML KGKDL K+M
Sbjct: 393 EFVAAIEAYGKLKKVEEAEAIFNKMSKTFKRLSSKHYSALLKVYADHKMLIKGKDLVKQM 452
Query: 181 AESGQRLDPFTWDALVKLYVEAGEVEKADSILQKSSQQNQLKPMFSSYMYIMEQYAKRGD 360
++SG R+ P TWDALVKLYVEAGEVEKAD ILQK+ QQ+ +KPMFS+YM IM+QYAKRGD
Sbjct: 453 SDSGCRIGPLTWDALVKLYVEAGEVEKADKILQKAMQQSPIKPMFSTYMAIMDQYAKRGD 512
Query: 361 VHNAEKIFNRLKQSGYVGRLRQYSALLDTYVKAKVPAYGFRDRMKGDNIFPNKPMQAKLA 540
+HN+EK+F++++QSGYV RLRQ+ L+ YV AK PAYG ++RMK DNIFPN+ + +LA
Sbjct: 513 IHNSEKMFHQMRQSGYVSRLRQFQCLIQAYVNAKAPAYGIKERMKADNIFPNRVVAGQLA 572
Query: 541 KVDAFRKTAISDILD 585
+VDAFRK+A+SD+LD
Sbjct: 573 QVDAFRKSAVSDLLD 587
>ref|XP_002322619.1| predicted protein [Populus trichocarpa] gi|222867249|gb|EEF04380.1|
predicted protein [Populus trichocarpa]
Length = 472
Score = 278 bits (710), Expect = 2e-72
Identities = 126/195 (64%), Positives = 166/195 (85%)
Frame = +1
Query: 1 ECLAAIEAWGKVGKVEEAEAVFDRMTQTWKKLSSRNYTTLLKVYANHKMLTKGKDLAKRM 180
EC+AAIEAWG++ K+ EAEAVF+ M++TWKKLSS++Y+ LLKVYAN+KML+KGKDL K+M
Sbjct: 278 ECMAAIEAWGQLKKIPEAEAVFELMSKTWKKLSSKHYSALLKVYANNKMLSKGKDLIKQM 337
Query: 181 AESGQRLDPFTWDALVKLYVEAGEVEKADSILQKSSQQNQLKPMFSSYMYIMEQYAKRGD 360
+SG R+ P TWDAL+KLYVEAGEVEKADSIL K+ QQNQ+KPMFSSYM IME+YAK+GD
Sbjct: 338 GDSGCRIGPLTWDALIKLYVEAGEVEKADSILNKAVQQNQMKPMFSSYMIIMEKYAKKGD 397
Query: 361 VHNAEKIFNRLKQSGYVGRLRQYSALLDTYVKAKVPAYGFRDRMKGDNIFPNKPMQAKLA 540
+HNAEK+F+R++Q+GY R +Q+ L+ Y+ AK P YG R+R+K D +F NK M A+L+
Sbjct: 398 IHNAEKMFHRMRQAGYQARSKQFQTLIQAYINAKAPCYGMRERLKADGLFANKAMAAQLS 457
Query: 541 KVDAFRKTAISDILD 585
+VDAF++T +SD+LD
Sbjct: 458 QVDAFKRTVVSDLLD 472