BLASTX nr result
ID: Coptis24_contig00002273
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00002273
(640 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI36671.3| unnamed protein product [Vitis vinifera] 127 1e-27
ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotei... 117 2e-24
emb|CAN75158.1| hypothetical protein VITISV_042645 [Vitis vinifera] 117 2e-24
ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotei... 111 1e-22
ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuc... 110 2e-22
>emb|CBI36671.3| unnamed protein product [Vitis vinifera]
Length = 1405
Score = 127 bits (320), Expect = 1e-27
Identities = 94/245 (38%), Positives = 122/245 (49%), Gaps = 39/245 (15%)
Frame = -1
Query: 640 LNWNHTLTCQQLQEAHIIVTTPDIWDVVSRNSGDEAFSQRVSLMIFDEIHLLYDRRGAXX 461
L+ + +LT QQ++E IIVTTP+ WD+++R SGD ++Q V L+I DEIHLL+D RG
Sbjct: 442 LSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLLHDNRGPVL 501
Query: 460 XXXXXXXXXEIRP*KS---TYGWSQSVIVICEYVTSFLQVCPSVGLFYFDNRYMPCQLAQ 290
+I K G S + + E V FL+V GLF+FDN Y PC LAQ
Sbjct: 502 ESIVARTVRQIETTKEHIRLVGLS-ATLPNYEDVALFLRVDLKKGLFHFDNSYRPCPLAQ 560
Query: 289 QYI*EI------------SVIG*TLLCEAGEHQVLIFVHS-KTVRTTNLVAHSH------ 167
QYI V ++ AG+HQVLIFVHS K T + HSH
Sbjct: 561 QYIGITVKKPLQRFQLMNDVCYEKVMAVAGKHQVLIFVHSRKETAKTAQILHSHTELVKN 620
Query: 166 ---GNLLSHGFAFHHDGMAIEDCQIVTSS*RVHKVTI--------------KLDVLQMLG 38
+LL +GFA HH GMA D Q+V V + LDV+QMLG
Sbjct: 621 NDLKDLLPYGFAIHHAGMARADRQLVEELFADGHVQVLIYNPEKGAWTELSPLDVMQMLG 680
Query: 37 PSTTP 23
+ P
Sbjct: 681 RAGRP 685
>ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis
vinifera]
Length = 2177
Score = 117 bits (293), Expect = 2e-24
Identities = 86/230 (37%), Positives = 113/230 (49%), Gaps = 49/230 (21%)
Frame = -1
Query: 640 LNWNHTLTCQQLQEAHIIVTTPDIWDVVSRNSGDEAFSQRVSLMIFDEIHLLYDRRGAXX 461
L+ + +LT QQ++E IIVTTP+ WD+++R SGD ++Q V L+I DEIHLL+D RG
Sbjct: 600 LSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLLHDNRGPVL 659
Query: 460 XXXXXXXXXEIRP*KS---TYGWSQSVIVICEYVTSFLQVCPSVGLFYFDNRYMPCQLAQ 290
+I K G S + + E V FL+V GLF+FDN Y PC LAQ
Sbjct: 660 ESIVARTVRQIETTKEHIRLVGLS-ATLPNYEDVALFLRVDLKKGLFHFDNSYRPCPLAQ 718
Query: 289 QYI*EI------------SVIG*TLLCEAGEHQVLIFVHS--------KTVRTTNL---- 182
QYI V ++ AG+HQVLIFVHS + +R T L
Sbjct: 719 QYIGITVKKPLQRFQLMNDVCYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDTALANDT 778
Query: 181 -------------VAHSH---------GNLLSHGFAFHHDGMAIEDCQIV 98
+ HSH +LL +GFA HH GMA D Q+V
Sbjct: 779 LGRFLKEDSASREILHSHTELVKNNDLKDLLPYGFAIHHAGMARADRQLV 828
>emb|CAN75158.1| hypothetical protein VITISV_042645 [Vitis vinifera]
Length = 2144
Score = 117 bits (293), Expect = 2e-24
Identities = 86/230 (37%), Positives = 113/230 (49%), Gaps = 49/230 (21%)
Frame = -1
Query: 640 LNWNHTLTCQQLQEAHIIVTTPDIWDVVSRNSGDEAFSQRVSLMIFDEIHLLYDRRGAXX 461
L+ + +LT QQ++E IIVTTP+ WD+++R SGD ++Q V L+I DEIHLL+D RG
Sbjct: 567 LSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLLHDNRGPVL 626
Query: 460 XXXXXXXXXEIRP*KS---TYGWSQSVIVICEYVTSFLQVCPSVGLFYFDNRYMPCQLAQ 290
+I K G S + + E V FL+V GLF+FDN Y PC LAQ
Sbjct: 627 ESIVARTVRQIETTKEHIRLVGLS-ATLPNYEDVALFLRVDLKKGLFHFDNSYRPCPLAQ 685
Query: 289 QYI*EI------------SVIG*TLLCEAGEHQVLIFVHS--------KTVRTTNL---- 182
QYI V ++ AG+HQVLIFVHS + +R T L
Sbjct: 686 QYIGITVKKPLQRFQLMNDVCYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDTALANDT 745
Query: 181 -------------VAHSH---------GNLLSHGFAFHHDGMAIEDCQIV 98
+ HSH +LL +GFA HH GMA D Q+V
Sbjct: 746 LGRFLKEDSASREILHSHTELVKNNDLKDLLPYGFAIHHAGMARADRQLV 795
>ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Glycine max]
Length = 2183
Score = 111 bits (277), Expect = 1e-22
Identities = 81/230 (35%), Positives = 111/230 (48%), Gaps = 49/230 (21%)
Frame = -1
Query: 640 LNWNHTLTCQQLQEAHIIVTTPDIWDVVSRNSGDEAFSQRVSLMIFDEIHLLYDRRGAXX 461
L+ + +LT QQ++E IIVTTP+ WD+++R SGD ++Q V L+I DEIHLL+D RG
Sbjct: 605 LSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 664
Query: 460 XXXXXXXXXEIRP*KS---TYGWSQSVIVICEYVTSFLQVCPSVGLFYFDNRYMPCQLAQ 290
+I K G S + + E V FL+V GLFYFDN Y P L+Q
Sbjct: 665 ESIVARTVRQIETTKDYIRLVGLS-ATLPNYEDVALFLRVDLKKGLFYFDNSYRPVPLSQ 723
Query: 289 QYI*EI------------SVIG*TLLCEAGEHQVLIFVHS--------KTVRTTNL---- 182
QY+ + ++ AG+HQVLIFVHS + +R T L
Sbjct: 724 QYVGITVKKPLQRFQLMNDICYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDTALANDT 783
Query: 181 -------------VAHSH---------GNLLSHGFAFHHDGMAIEDCQIV 98
+ H+H +LL +GFA HH GM D Q+V
Sbjct: 784 LGRFLKEDSASREILHTHTDLVKSNDLKDLLPYGFAIHHAGMTRTDRQLV 833
>ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein
200 kDa helicase-like [Cucumis sativus]
Length = 2175
Score = 110 bits (276), Expect = 2e-22
Identities = 87/236 (36%), Positives = 111/236 (47%), Gaps = 55/236 (23%)
Frame = -1
Query: 640 LNWNHTLTCQQLQEAHIIVTTPDIWDVVSRNSGDEAFSQRVSLMIFDEIHLLYDRRGAXX 461
L+ + TLT QQ+ E IIVTTP+ WD+++R SGD ++Q V L+I DEIHLL+D RG
Sbjct: 598 LSGDQTLTRQQIDETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 657
Query: 460 XXXXXXXXXEIRP*KS---TYGWSQSVIVICEYVTSFLQVCPSVGLFYFDNRYMPCQLAQ 290
+I K G S + + E V FL+V P GLF+FDN Y P L Q
Sbjct: 658 ESIVARTVRQIETTKEHIRLVGLS-ATLPNYEDVALFLRVDPKKGLFHFDNSYRPVALYQ 716
Query: 289 QYI*EISVIG*TL------------LCE------AGEHQVLIFVH-----SKTVR----- 194
QY IG T+ LC AG+HQVLIFVH SKT R
Sbjct: 717 QY------IGITVKKPLQRFQLMNDLCYEKVMSFAGKHQVLIFVHSRKETSKTARAIRDA 770
Query: 193 ---------------TTNLVAHSH---------GNLLSHGFAFHHDGMAIEDCQIV 98
+ + H+H +LL +GFA HH GM D Q+V
Sbjct: 771 ALANDTLSRFLKEDSASREILHTHTDLVKSNELKDLLPYGFAIHHAGMTRVDRQLV 826