BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002129
         (383 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   168   5e-40
ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polyme...   164   9e-39
sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA ...   163   1e-38
ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho...   163   1e-38
gb|EEE54718.1| hypothetical protein OsJ_02054 [Oryza sativa Japo...   163   1e-38

>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score =  168 bits (425), Expect = 5e-40
 Identities = 88/147 (59%), Positives = 106/147 (72%), Gaps = 21/147 (14%)
 Frame = -1

Query: 380  KRSWKPMDYSPA--------VTNEDIIDFFVKNMVDEKLGTIFNAHVVHADRSEQGAMDK 225
            KRSW PM Y  A        V ++DIIDFF KNMV+E LG I NAHVVHAD SE GA+D+
Sbjct: 883  KRSWLPMQYDAAEAKQLNRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDE 942

Query: 224  NCIRLAKLAATAVDFPQTGRTVTMPQHLKPKVYPDFMEKEDFQSYKSDKILGQLYRKV-- 51
            NCI+LA+LAATAVDFP+TG+ VTMP HLKPK+YPDFM KED+QSY S+KILG+LYR+V  
Sbjct: 943  NCIKLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKD 1002

Query: 50   IYSD-----------IQLSSAAGDLPY 3
             Y+D            +L+   GD+PY
Sbjct: 1003 DYNDDDDDDDDAATSSELNLVRGDIPY 1029


>ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
            [Brachypodium distachyon]
          Length = 1208

 Score =  164 bits (414), Expect = 9e-39
 Identities = 79/118 (66%), Positives = 95/118 (80%), Gaps = 8/118 (6%)
 Frame = -1

Query: 380  KRSWKPMDYSPA--------VTNEDIIDFFVKNMVDEKLGTIFNAHVVHADRSEQGAMDK 225
            K+SW PMDYSPA        V+  DI+DFF+KNMV+E LG I NAHVVHAD SE GAMD+
Sbjct: 897  KKSWNPMDYSPAEAKQQQRQVSQHDIVDFFLKNMVNENLGPICNAHVVHADLSEYGAMDE 956

Query: 224  NCIRLAKLAATAVDFPQTGRTVTMPQHLKPKVYPDFMEKEDFQSYKSDKILGQLYRKV 51
             CIRLA+LAATAVDFP+TG+ VTMP  L+PK+YPDFM KE+ +SYKS+KILG+LYR +
Sbjct: 957  KCIRLAELAATAVDFPKTGKLVTMPPELRPKIYPDFMLKEESRSYKSEKILGRLYRSI 1014


>sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
            Full=Protein SHOOTLESS 2 gi|21328146|dbj|BAC00725.1|
            putative RNA-dependent RNA polymerase [Oryza sativa
            Japonica Group] gi|157279691|dbj|BAF80151.1| SHOOTLESS2
            [Oryza sativa Japonica Group]
          Length = 1218

 Score =  163 bits (413), Expect = 1e-38
 Identities = 80/118 (67%), Positives = 91/118 (77%), Gaps = 8/118 (6%)
 Frame = -1

Query: 380  KRSWKPMDYSPA--------VTNEDIIDFFVKNMVDEKLGTIFNAHVVHADRSEQGAMDK 225
            K+SW PMDYSP         V+  DIIDFF+KNM+ E LG I NAHVVHAD SE GAMD+
Sbjct: 906  KKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDE 965

Query: 224  NCIRLAKLAATAVDFPQTGRTVTMPQHLKPKVYPDFMEKEDFQSYKSDKILGQLYRKV 51
             CI LA+LAATAVDFP+TG+   MP HLKPKVYPDFM KED QSYKS+KILG+LYR +
Sbjct: 966  KCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSI 1023


>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1200

 Score =  163 bits (413), Expect = 1e-38
 Identities = 81/141 (57%), Positives = 104/141 (73%), Gaps = 15/141 (10%)
 Frame = -1

Query: 380  KRSWKPMDYSPA--------VTNEDIIDFFVKNMVDEKLGTIFNAHVVHADRSEQGAMDK 225
            KRSW PM Y  A        V ++DII+FF KNMV++ LG I NAHVVHAD SE GA DK
Sbjct: 886  KRSWIPMQYDAAEAKLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDK 945

Query: 224  NCIRLAKLAATAVDFPQTGRTVTMPQHLKPKVYPDFMEKEDFQSYKSDKILGQLYRKV-- 51
            NC+ LA+LAATAVDFP+TG+ V+MP +LKPK+YPDFM KE++QSYKS+KILG+LYR++  
Sbjct: 946  NCLTLAELAATAVDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKD 1005

Query: 50   -----IYSDIQLSSAAGDLPY 3
                 + +  +L+   GD+PY
Sbjct: 1006 AYDEDVAASSELNLVPGDIPY 1026


>gb|EEE54718.1| hypothetical protein OsJ_02054 [Oryza sativa Japonica Group]
          Length = 1571

 Score =  163 bits (413), Expect = 1e-38
 Identities = 80/118 (67%), Positives = 91/118 (77%), Gaps = 8/118 (6%)
 Frame = -1

Query: 380  KRSWKPMDYSPA--------VTNEDIIDFFVKNMVDEKLGTIFNAHVVHADRSEQGAMDK 225
            K+SW PMDYSP         V+  DIIDFF+KNM+ E LG I NAHVVHAD SE GAMD+
Sbjct: 1259 KKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDE 1318

Query: 224  NCIRLAKLAATAVDFPQTGRTVTMPQHLKPKVYPDFMEKEDFQSYKSDKILGQLYRKV 51
             CI LA+LAATAVDFP+TG+   MP HLKPKVYPDFM KED QSYKS+KILG+LYR +
Sbjct: 1319 KCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSI 1376