BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002114
         (737 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   387   e-105
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   376   e-102
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   375   e-102
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su...   367   1e-99
ref|XP_002313865.1| predicted protein [Populus trichocarpa] gi|2...   367   1e-99

>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 318

 Score =  387 bits (993), Expect = e-105
 Identities = 195/243 (80%), Positives = 210/243 (86%)
 Frame = -3

Query: 729 MEGAKNQRFPKIKIREMKDDYLKFELRETDASMANALRRVMLAEVPTIAIDLVEIEVNST 550
           MEGA  QRFP+IKIRE+KDDY KFELR+TDASMANALRRVM+AEVPT+AIDLVEIEVNS+
Sbjct: 1   MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 549 VLNDEFISHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTQDV 370
           VLNDEFI+HRLGLIPLTS+RAM MRFSRDCDACDGDGQC+YCSVEFHL  +C  DQT DV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120

Query: 369 TSADLQSTDPTVVPVDVAARSSSSGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHA 190
           TS DL S+D TVVPVD    S SSGYD+SE RGIIIVKLRRGQELRLRAIARKGIGKDHA
Sbjct: 121 TSKDLYSSDHTVVPVDF---SDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHA 177

Query: 189 KWSPAATVTFMYEPEIRINXXXXXXXXXXEKNSWIESSPTKVFGIDPNTHQVMVVDAEAY 10
           KWSPAATVTFMYEP+I IN          EK SW+ESSPTKVF IDPNT QV+VVD EAY
Sbjct: 178 KWSPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAY 237

Query: 9   TYD 1
           TYD
Sbjct: 238 TYD 240


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  376 bits (966), Expect = e-102
 Identities = 190/243 (78%), Positives = 208/243 (85%)
 Frame = -3

Query: 729 MEGAKNQRFPKIKIREMKDDYLKFELRETDASMANALRRVMLAEVPTIAIDLVEIEVNST 550
           MEG   QRFPKIKIRE+KDDY KFELRETDASMANALRRVM+AEVPT+AIDLVEIEVNS+
Sbjct: 1   MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 549 VLNDEFISHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTQDV 370
           VLNDEFI+HRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEFHL  +C  D+T DV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 369 TSADLQSTDPTVVPVDVAARSSSSGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHA 190
           TS DL S+D TVVPVD    S SSGYD+++ +GIIIVKLRRGQELRLRAIARKGIGKDHA
Sbjct: 121 TSKDLISSDHTVVPVDF---SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHA 177

Query: 189 KWSPAATVTFMYEPEIRINXXXXXXXXXXEKNSWIESSPTKVFGIDPNTHQVMVVDAEAY 10
           KWSPAATVTFMYEPEI IN          EK SW+ESSPTKVF ID ++ QV+V DAEAY
Sbjct: 178 KWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAY 237

Query: 9   TYD 1
           TYD
Sbjct: 238 TYD 240


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
           vinifera]
          Length = 318

 Score =  375 bits (964), Expect = e-102
 Identities = 190/243 (78%), Positives = 208/243 (85%)
 Frame = -3

Query: 729 MEGAKNQRFPKIKIREMKDDYLKFELRETDASMANALRRVMLAEVPTIAIDLVEIEVNST 550
           MEG   QRFPKIKIRE+KDDY KFELRETDASMANALRRVM+AEVPT+AIDLVEIEVNS+
Sbjct: 1   MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 549 VLNDEFISHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTQDV 370
           VLNDEFI+HRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEFHL  +C  D+T DV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 369 TSADLQSTDPTVVPVDVAARSSSSGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHA 190
           TS DL S+D TVVPVD    S SSGYD+++ +GIIIVKLRRGQELRLRAIARKGIGKDHA
Sbjct: 121 TSKDLISSDHTVVPVDF---SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHA 177

Query: 189 KWSPAATVTFMYEPEIRINXXXXXXXXXXEKNSWIESSPTKVFGIDPNTHQVMVVDAEAY 10
           KWSPAATVTFMYEPEI IN          EK SW+ESSPTKVF ID ++ QV+V DAEAY
Sbjct: 178 KWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAY 237

Query: 9   TYD 1
           TYD
Sbjct: 238 TYD 240


>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Cucumis sativus]
          Length = 320

 Score =  367 bits (943), Expect = 1e-99
 Identities = 183/243 (75%), Positives = 207/243 (85%)
 Frame = -3

Query: 729 MEGAKNQRFPKIKIREMKDDYLKFELRETDASMANALRRVMLAEVPTIAIDLVEIEVNST 550
           MEG+  QRFPK+KIRE++DDY KFELR+TDASMANALRRVM+AEVPTIAIDLVEIEVNS+
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 549 VLNDEFISHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTQDV 370
           VLNDEFI+HRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEFHL  +C  DQT DV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 369 TSADLQSTDPTVVPVDVAARSSSSGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHA 190
           TS DL S+D TVVPVD +  ++++G +A + +GIIIVKLRRGQELRLRAIARKGIGKDHA
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATG-EALDTKGIIIVKLRRGQELRLRAIARKGIGKDHA 179

Query: 189 KWSPAATVTFMYEPEIRINXXXXXXXXXXEKNSWIESSPTKVFGIDPNTHQVMVVDAEAY 10
           KWSPAATVTFMYEP I IN          EK +W+ES PT+VF +D  THQVMVVD EAY
Sbjct: 180 KWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAY 239

Query: 9   TYD 1
           TYD
Sbjct: 240 TYD 242


>ref|XP_002313865.1| predicted protein [Populus trichocarpa] gi|222850273|gb|EEE87820.1|
           predicted protein [Populus trichocarpa]
          Length = 346

 Score =  367 bits (942), Expect = 1e-99
 Identities = 192/245 (78%), Positives = 205/245 (83%), Gaps = 2/245 (0%)
 Frame = -3

Query: 729 MEGAKNQRFPKIKIREMKDDYLKFELRETDASMANALRRVMLAEVPTIAIDLVEIEVNST 550
           ME    QRFPKIKIREMKDDYLKFELRETDASMANALRRVM+AEVPTIAIDLVEIEVNS+
Sbjct: 1   MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 549 VLNDEFISHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTQDV 370
           VLNDEFI+HRLGLIPLTS+RAM MRFSRDCDACDGDGQCEYCSVEFHL  +C  DQT DV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120

Query: 369 TSADLQSTDPTVVPVDVAARSSSSG-YDASE-NRGIIIVKLRRGQELRLRAIARKGIGKD 196
           TS DL S+D  V+PVD +  S ++  +D +E  RGIIIVKLRRGQELRLRAIARKGIGKD
Sbjct: 121 TSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGKD 180

Query: 195 HAKWSPAATVTFMYEPEIRINXXXXXXXXXXEKNSWIESSPTKVFGIDPNTHQVMVVDAE 16
           HAKWSPAATVTFMYEPEI IN          EK SWIESSPTKVF ID  T QV+VVD E
Sbjct: 181 HAKWSPAATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQVVVVDPE 240

Query: 15  AYTYD 1
           AYTYD
Sbjct: 241 AYTYD 245