BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00002113
         (1151 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   275   2e-74
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II su...   270   2e-70
emb|CBI40277.3| unnamed protein product [Vitis vinifera]              270   5e-70
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   270   5e-70
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   270   5e-70

>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 318

 Score =  275 bits (702), Expect(2) = 2e-74
 Identities = 140/170 (82%), Positives = 151/170 (88%)
 Frame = -1

Query: 1004 RGIIIVKLRRGQELRL*AIARKGIGKDHAKWSPAATVTFMYELEIRINXXXXXXXXXXEK 825
            RGIIIVKLRRGQELRL AIARKGIGKDHAKWSPAATVTFMYE +I IN          EK
Sbjct: 149  RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLSLEEK 208

Query: 824  NVWIESSPTKVFGIDPNTHQVMVVDAEAYTYDEEVIKKAEAMGKPGLVEIEAKEDSFIFT 645
              W+ESSPTKVF IDPNT QV+VVD EAYTYDEEVIKKAE+MGKPGLV I+AKEDSFIFT
Sbjct: 209  QSWVESSPTKVFDIDPNTQQVVVVDPEAYTYDEEVIKKAESMGKPGLVNIQAKEDSFIFT 268

Query: 644  VESTGAVKASQLVINAIDVLKQKLDAVRLSDDTVEADDQFGELGSHMRGG 495
            VESTGA+KASQLV+NAI++LKQKLDAVRLS+DTVEADDQFGELG+HMRGG
Sbjct: 269  VESTGAIKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318



 Score = 32.0 bits (71), Expect(2) = 2e-74
 Identities = 19/32 (59%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 1150 TSADLQSTDPTVVATR-SSSSGYDASENRYFI 1058
            TS DL S+D TVV    S SSGYD+SE R  I
Sbjct: 121  TSKDLYSSDHTVVPVDFSDSSGYDSSEQRGII 152


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Glycine max]
          Length = 319

 Score =  270 bits (689), Expect(2) = 2e-70
 Identities = 138/171 (80%), Positives = 152/171 (88%)
 Frame = -1

Query: 1007 SRGIIIVKLRRGQELRL*AIARKGIGKDHAKWSPAATVTFMYELEIRINXXXXXXXXXXE 828
            +RGIIIVKLRRGQEL+L AIARKGIGKDHAKWSPAATVTFMYE EI IN          E
Sbjct: 149  NRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEE 208

Query: 827  KNVWIESSPTKVFGIDPNTHQVMVVDAEAYTYDEEVIKKAEAMGKPGLVEIEAKEDSFIF 648
            K  W++SSPT+VF IDP T QVMVVDAEAYTYD+EV+KKAEAMGKPGLVEI A++DSFIF
Sbjct: 209  KREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDDEVLKKAEAMGKPGLVEIIARQDSFIF 268

Query: 647  TVESTGAVKASQLVINAIDVLKQKLDAVRLSDDTVEADDQFGELGSHMRGG 495
            TVESTGAVKASQLV+NAI++LKQKLDAVRLS+DTVEADDQFGELG+HMRGG
Sbjct: 269  TVESTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 319



 Score = 24.3 bits (51), Expect(2) = 2e-70
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 1150 TSADLQSTDPTVVATR-SSSSGYDASENRYFI 1058
            TS DL S+DPTV     S  S  D+  NR  I
Sbjct: 122  TSKDLYSSDPTVSPVDFSDPSATDSDNNRGII 153


>emb|CBI40277.3| unnamed protein product [Vitis vinifera]
          Length = 206

 Score =  270 bits (690), Expect = 5e-70
 Identities = 139/170 (81%), Positives = 150/170 (88%)
 Frame = -1

Query: 1004 RGIIIVKLRRGQELRL*AIARKGIGKDHAKWSPAATVTFMYELEIRINXXXXXXXXXXEK 825
            +GIIIVKLRRGQELRL AIARKGIGKDHAKWSPAATVTFMYE EI IN          EK
Sbjct: 37   KGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEK 96

Query: 824  NVWIESSPTKVFGIDPNTHQVMVVDAEAYTYDEEVIKKAEAMGKPGLVEIEAKEDSFIFT 645
              W+ESSPTKVF ID ++ QV+V DAEAYTYD+EV+KKAEAMGKPGLVEI AKEDSFIFT
Sbjct: 97   TSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFT 156

Query: 644  VESTGAVKASQLVINAIDVLKQKLDAVRLSDDTVEADDQFGELGSHMRGG 495
            VESTGA+KASQLV+NAIDVLKQKLDAVRLS+DTVEADDQFGELG+HMRGG
Sbjct: 157  VESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG 206


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
            vinifera]
          Length = 318

 Score =  270 bits (690), Expect = 5e-70
 Identities = 139/170 (81%), Positives = 150/170 (88%)
 Frame = -1

Query: 1004 RGIIIVKLRRGQELRL*AIARKGIGKDHAKWSPAATVTFMYELEIRINXXXXXXXXXXEK 825
            +GIIIVKLRRGQELRL AIARKGIGKDHAKWSPAATVTFMYE EI IN          EK
Sbjct: 149  KGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEK 208

Query: 824  NVWIESSPTKVFGIDPNTHQVMVVDAEAYTYDEEVIKKAEAMGKPGLVEIEAKEDSFIFT 645
              W+ESSPTKVF ID ++ QV+V DAEAYTYD+EV+KKAEAMGKPGLVEI AKEDSFIFT
Sbjct: 209  TSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFT 268

Query: 644  VESTGAVKASQLVINAIDVLKQKLDAVRLSDDTVEADDQFGELGSHMRGG 495
            VESTGA+KASQLV+NAIDVLKQKLDAVRLS+DTVEADDQFGELG+HMRGG
Sbjct: 269  VESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  270 bits (690), Expect = 5e-70
 Identities = 139/170 (81%), Positives = 150/170 (88%)
 Frame = -1

Query: 1004 RGIIIVKLRRGQELRL*AIARKGIGKDHAKWSPAATVTFMYELEIRINXXXXXXXXXXEK 825
            +GIIIVKLRRGQELRL AIARKGIGKDHAKWSPAATVTFMYE EI IN          EK
Sbjct: 149  KGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEK 208

Query: 824  NVWIESSPTKVFGIDPNTHQVMVVDAEAYTYDEEVIKKAEAMGKPGLVEIEAKEDSFIFT 645
              W+ESSPTKVF ID ++ QV+V DAEAYTYD+EV+KKAEAMGKPGLVEI AKEDSFIFT
Sbjct: 209  TSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFT 268

Query: 644  VESTGAVKASQLVINAIDVLKQKLDAVRLSDDTVEADDQFGELGSHMRGG 495
            VESTGA+KASQLV+NAIDVLKQKLDAVRLS+DTVEADDQFGELG+HMRGG
Sbjct: 269  VESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318