BLASTX nr result
ID: Coptis24_contig00002058
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00002058
(1697 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285135.1| PREDICTED: pentatricopeptide repeat-containi... 459 e-126
emb|CAN70199.1| hypothetical protein VITISV_021220 [Vitis vinifera] 459 e-126
ref|XP_004137115.1| PREDICTED: pentatricopeptide repeat-containi... 447 e-123
ref|XP_002303271.1| predicted protein [Populus trichocarpa] gi|2... 443 e-122
ref|XP_004166669.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 442 e-121
>ref|XP_002285135.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690
[Vitis vinifera]
Length = 593
Score = 459 bits (1181), Expect = e-126
Identities = 218/323 (67%), Positives = 261/323 (80%), Gaps = 6/323 (1%)
Frame = +2
Query: 2 HSLLFKSQMRGDLVLLNNLIEMYGKCESMNEAKQVFERMLDRDLDSWHAMMNGYAANGLG 181
H +S R DL L N ++EMYG C SM +A++VF+ M +RD+DSWH M+NGYA N +G
Sbjct: 271 HDFFLQSTFRSDLQLNNKVLEMYGNCGSMTDARRVFDHMANRDMDSWHLMINGYANNAMG 330
Query: 182 DDGLQLFEEMRKLGLKPNEKTFLAVFAACGSADAIEECFLHFDLMKNEYGISPSVEHYVG 361
DDGLQL+E+MRKLGL+PNE+TFLAV + C SA+A+EE F+HF+ MK EYGI+P+ EHYVG
Sbjct: 331 DDGLQLYEQMRKLGLEPNEQTFLAVLSTCASAEAVEEGFIHFESMKTEYGITPTFEHYVG 390
Query: 362 IVDVLGKCGYVTEAEEYVEKMPFEPTVEIWETLMKVARVHGDIDLEDRAEELMVGLVPSL 541
I+DVLGK G+V EA+E++E+MP EP+ +WE LM A++HGDIDLED AEELMV L P
Sbjct: 391 IIDVLGKSGHVIEAKEFIEQMPVEPSAVVWEALMNYAKIHGDIDLEDHAEELMVALDPLK 450
Query: 542 ANXXXXXXXXXXXRSAISLLDGKNRVNEYRHLPPYKNEEK------PKEQGYVPDTRYVL 703
A R+AI++LDGKNR++E+R+ YK++EK KE GYVPDTRYVL
Sbjct: 451 AVANKTPTPPPKKRTAINMLDGKNRLSEFRNPTLYKDDEKLKSLNGMKEAGYVPDTRYVL 510
Query: 704 HDIDQEAKEQALLYHSERLAIAYGLISTPARMPLRIIKNLRICGDCHNAIKIMAKIVGRE 883
HDIDQEAKEQALLYHSERLAIAYGLISTPAR PLRIIKNLR+CGDCHNAIKIM+KIVGRE
Sbjct: 511 HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSKIVGRE 570
Query: 884 LIVRDNKRFHHFKDGKCSCGDYW 952
LIVRDNKRFHHFKDGKCSCGDYW
Sbjct: 571 LIVRDNKRFHHFKDGKCSCGDYW 593
>emb|CAN70199.1| hypothetical protein VITISV_021220 [Vitis vinifera]
Length = 627
Score = 459 bits (1181), Expect = e-126
Identities = 218/323 (67%), Positives = 261/323 (80%), Gaps = 6/323 (1%)
Frame = +2
Query: 2 HSLLFKSQMRGDLVLLNNLIEMYGKCESMNEAKQVFERMLDRDLDSWHAMMNGYAANGLG 181
H +S R DL L N ++EMYG C SM +A++VF+ M +RD+DSWH M+NGYA N +G
Sbjct: 305 HDFFLQSTFRSDLQLNNKVLEMYGNCGSMTDARRVFDHMTNRDMDSWHLMINGYANNAMG 364
Query: 182 DDGLQLFEEMRKLGLKPNEKTFLAVFAACGSADAIEECFLHFDLMKNEYGISPSVEHYVG 361
DDGLQL+E+MRKLGL+PNE+TFLAV + C SA+A+EE F+HF+ MK EYGI+P+ EHYVG
Sbjct: 365 DDGLQLYEQMRKLGLEPNEQTFLAVLSTCASAEAVEEGFIHFESMKTEYGITPTFEHYVG 424
Query: 362 IVDVLGKCGYVTEAEEYVEKMPFEPTVEIWETLMKVARVHGDIDLEDRAEELMVGLVPSL 541
I+DVLGK G+V EA+E++E+MP EP+ +WE LM A++HGDIDLED AEELMV L P
Sbjct: 425 IIDVLGKSGHVIEAKEFIEQMPVEPSAVVWEALMNYAKIHGDIDLEDHAEELMVALDPLK 484
Query: 542 ANXXXXXXXXXXXRSAISLLDGKNRVNEYRHLPPYKNEEK------PKEQGYVPDTRYVL 703
A R+AI++LDGKNR++E+R+ YK++EK KE GYVPDTRYVL
Sbjct: 485 AVANKTPTPPPKKRTAINMLDGKNRLSEFRNPTLYKDDEKLKSLNGMKEAGYVPDTRYVL 544
Query: 704 HDIDQEAKEQALLYHSERLAIAYGLISTPARMPLRIIKNLRICGDCHNAIKIMAKIVGRE 883
HDIDQEAKEQALLYHSERLAIAYGLISTPAR PLRIIKNLR+CGDCHNAIKIM+KIVGRE
Sbjct: 545 HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSKIVGRE 604
Query: 884 LIVRDNKRFHHFKDGKCSCGDYW 952
LIVRDNKRFHHFKDGKCSCGDYW
Sbjct: 605 LIVRDNKRFHHFKDGKCSCGDYW 627
>ref|XP_004137115.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like
[Cucumis sativus]
Length = 688
Score = 447 bits (1150), Expect = e-123
Identities = 215/323 (66%), Positives = 258/323 (79%), Gaps = 6/323 (1%)
Frame = +2
Query: 2 HSLLFKSQMRGDLVLLNNLIEMYGKCESMNEAKQVFERMLDRDLDSWHAMMNGYAANGLG 181
H +S R DL L N ++EMYG+C SM++A++VF+ M DR +DSWH MM GYA NGLG
Sbjct: 366 HDYFLQSSCRSDLQLNNEVLEMYGRCGSMSDARRVFDHMPDRSIDSWHLMMKGYADNGLG 425
Query: 182 DDGLQLFEEMRKLGLKPNEKTFLAVFAACGSADAIEECFLHFDLMKNEYGISPSVEHYVG 361
D+GL+LFE M+ LGL+PN +TFL V +AC SA+A+EE FL+F+ MKN+Y I+P HY+G
Sbjct: 426 DEGLELFENMKNLGLQPNSQTFLYVMSACASANAVEEGFLYFESMKNDYHITPDTNHYLG 485
Query: 362 IVDVLGKCGYVTEAEEYVEKMPFEPTVEIWETLMKVARVHGDIDLEDRAEELMVGLVPSL 541
++ +LG+ G++ EA EYVEK+P EPTVE+WETL AR+HGD+DLED AEEL+V L P+
Sbjct: 486 LLGILGEPGHIHEAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTK 545
Query: 542 ANXXXXXXXXXXXRSAISLLDGKNRVNEYRHLPPYKNEEK------PKEQGYVPDTRYVL 703
A RSAIS+LDGKNR+ E+R+ YK++EK KEQGYVPDTRYVL
Sbjct: 546 AVSNKISTPPPKKRSAISMLDGKNRIVEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVL 605
Query: 704 HDIDQEAKEQALLYHSERLAIAYGLISTPARMPLRIIKNLRICGDCHNAIKIMAKIVGRE 883
HDIDQEAKEQALLYHSERLAIAYGLISTPAR PLRIIKNLRICGDCHNAIKIM++IVGRE
Sbjct: 606 HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRE 665
Query: 884 LIVRDNKRFHHFKDGKCSCGDYW 952
LIVRDNKRFHHFKDGKCSCGDYW
Sbjct: 666 LIVRDNKRFHHFKDGKCSCGDYW 688
>ref|XP_002303271.1| predicted protein [Populus trichocarpa] gi|222840703|gb|EEE78250.1|
predicted protein [Populus trichocarpa]
Length = 334
Score = 443 bits (1139), Expect = e-122
Identities = 217/323 (67%), Positives = 258/323 (79%), Gaps = 6/323 (1%)
Frame = +2
Query: 2 HSLLFKSQMRGDLVLLNNLIEMYGKCESMNEAKQVFERMLDRDLDSWHAMMNGYAANGLG 181
H +S RGD+ L NN+I+MYGKC SM +A++VF+ M +R++DSWH M+N YA N LG
Sbjct: 12 HDYFLQSTFRGDVKLNNNVIKMYGKCGSMADARRVFDHMPERNMDSWHLMINEYANNDLG 71
Query: 182 DDGLQLFEEMRKLGLKPNEKTFLAVFAACGSADAIEECFLHFDLMKNEYGISPSVEHYVG 361
D+GL+LFE+M+KLGL+P +TF AV +AC SA+A+EE FL+F+ M E+GISP++EHY+
Sbjct: 72 DEGLELFEQMKKLGLEPTGETFHAVLSACASAEAVEEGFLYFEEMSREFGISPTLEHYLS 131
Query: 362 IVDVLGKCGYVTEAEEYVEKMPFEPTVEIWETLMKVARVHGDIDLEDRAEELMVGLVPSL 541
I+DVLGK Y+ EA EY+EK+PFEPTVEIWE L K AR HGDIDLED AEEL+V L S
Sbjct: 132 IIDVLGKSAYLNEAVEYIEKLPFEPTVEIWEALRKYARSHGDIDLEDHAEELIVSLDSSK 191
Query: 542 ANXXXXXXXXXXXRSAISLLDGKNRVNEYRHLPPYKNEEKPKE------QGYVPDTRYVL 703
A + IS+L+GKNRV E+R+ YK++EK KE GYVPDTRYVL
Sbjct: 192 AVANKIPTPPPKKYNLISMLEGKNRVAEFRNPTFYKDDEKLKELREMKTGGYVPDTRYVL 251
Query: 704 HDIDQEAKEQALLYHSERLAIAYGLISTPARMPLRIIKNLRICGDCHNAIKIMAKIVGRE 883
HDIDQEAKEQALLYHSERLAIAYGLISTPARMPLRIIKNLR+CGDCHNAIKIM+KIVGRE
Sbjct: 252 HDIDQEAKEQALLYHSERLAIAYGLISTPARMPLRIIKNLRVCGDCHNAIKIMSKIVGRE 311
Query: 884 LIVRDNKRFHHFKDGKCSCGDYW 952
LIVRDNKRFHHFKDGKCSCGDYW
Sbjct: 312 LIVRDNKRFHHFKDGKCSCGDYW 334
>ref|XP_004166669.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g15690-like [Cucumis sativus]
Length = 588
Score = 442 bits (1138), Expect = e-121
Identities = 213/323 (65%), Positives = 256/323 (79%), Gaps = 6/323 (1%)
Frame = +2
Query: 2 HSLLFKSQMRGDLVLLNNLIEMYGKCESMNEAKQVFERMLDRDLDSWHAMMNGYAANGLG 181
H +S R DL L N ++EMYG+C SM++A++VF+ M DR +DSWH MM GYA NGLG
Sbjct: 266 HDYFLQSSCRSDLQLNNEVLEMYGRCGSMSDARRVFDHMPDRSIDSWHLMMKGYADNGLG 325
Query: 182 DDGLQLFEEMRKLGLKPNEKTFLAVFAACGSADAIEECFLHFDLMKNEYGISPSVEHYVG 361
D+GL+LFE M+ LGL+PN +TFL V +AC SA+A+EE FL+F+ MKN+Y I+P HY+G
Sbjct: 326 DEGLELFENMKNLGLQPNSQTFLYVMSACASANAVEEGFLYFESMKNDYHITPDTNHYLG 385
Query: 362 IVDVLGKCGYVTEAEEYVEKMPFEPTVEIWETLMKVARVHGDIDLEDRAEELMVGLVPSL 541
++ +LG+ G++ EA EYVEK+P EPTVE+WETL AR+HGD+DLED AEEL+V L P+
Sbjct: 386 LLGILGEPGHIHEAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTK 445
Query: 542 ANXXXXXXXXXXXRSAISLLDGKNRVNEYRHLPPYKNEEK------PKEQGYVPDTRYVL 703
A SAIS+LDGKNR+ E+R+ YK++ K KEQGYVPDTRYVL
Sbjct: 446 AVSNKISTPPPKNXSAISMLDGKNRIVEFRNPTLYKDDXKLKALKAMKEQGYVPDTRYVL 505
Query: 704 HDIDQEAKEQALLYHSERLAIAYGLISTPARMPLRIIKNLRICGDCHNAIKIMAKIVGRE 883
HDIDQEAKEQALLYHSERLAIAYGLISTPAR PLRIIKNLRICGDCHNAIKIM++IVGRE
Sbjct: 506 HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRE 565
Query: 884 LIVRDNKRFHHFKDGKCSCGDYW 952
LIVRDNKRFHHFKDGKCSCGDYW
Sbjct: 566 LIVRDNKRFHHFKDGKCSCGDYW 588