BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001991
         (1292 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24452.3| unnamed protein product [Vitis vinifera]              194   5e-47
ref|XP_003629226.1| Pentatricopeptide repeat-containing protein ...   171   4e-40
ref|XP_004146207.1| PREDICTED: pentatricopeptide repeat-containi...   170   8e-40
ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containi...   162   2e-37
gb|ACU21153.1| unknown [Glycine max]                                  162   2e-37

>emb|CBI24452.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  194 bits (492), Expect = 5e-47
 Identities = 91/122 (74%), Positives = 107/122 (87%)
 Frame = -2

Query: 1291 LGRAGQLNEALELIESMPVKGGKDVYGALLGACRIHKNIELAEEAAERLFVLDPQNAGRY 1112
            LGRAG L+EA+E +++MPV+ GKDVYGALLGACRIH NIELAEE AE+LFVLDP NAGRY
Sbjct: 358  LGRAGFLHEAVEFVKNMPVQPGKDVYGALLGACRIHNNIELAEEIAEKLFVLDPDNAGRY 417

Query: 1111 IILAKMYEDAGRWTDAARVRKVLREKQIKKQPGCSAVEVNCLLHTFGVEDESHPLKGQIF 932
            IIL KMYEDAG+W +AAR+RK L+EK I+K  GCSA+E+ C+LHTFGVED+SHP K QIF
Sbjct: 418  IILVKMYEDAGKWENAARLRKALKEKNIRKPLGCSAIELGCVLHTFGVEDKSHPFKDQIF 477

Query: 931  DT 926
            DT
Sbjct: 478  DT 479


>ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355523248|gb|AET03702.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 510

 Score =  171 bits (433), Expect = 4e-40
 Identities = 84/122 (68%), Positives = 102/122 (83%)
 Frame = -2

Query: 1291 LGRAGQLNEALELIESMPVKGGKDVYGALLGACRIHKNIELAEEAAERLFVLDPQNAGRY 1112
            LGRAG L +A+ELI+SMP++ GK+VYGALLGA RIHKNIELAE AAE+LFVLDP NAGRY
Sbjct: 369  LGRAGNLEKAMELIQSMPIQPGKNVYGALLGASRIHKNIELAELAAEKLFVLDPNNAGRY 428

Query: 1111 IILAKMYEDAGRWTDAARVRKVLREKQIKKQPGCSAVEVNCLLHTFGVEDESHPLKGQIF 932
            +ILA+MYED GRW DAAR+RK++REK+IKK  G S+VE+      FGV DE+HPL  +IF
Sbjct: 429  VILAQMYEDEGRWKDAARLRKIIREKEIKKPIGYSSVELESGHKKFGVNDETHPLTTEIF 488

Query: 931  DT 926
            +T
Sbjct: 489  ET 490


>ref|XP_004146207.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
            chloroplastic-like [Cucumis sativus]
          Length = 480

 Score =  170 bits (430), Expect = 8e-40
 Identities = 77/122 (63%), Positives = 100/122 (81%)
 Frame = -2

Query: 1291 LGRAGQLNEALELIESMPVKGGKDVYGALLGACRIHKNIELAEEAAERLFVLDPQNAGRY 1112
            LGRAG L +A+E IE MPV+ GKDVYGALLGACRIH N+ELA+E  E+LF+LDP+ A RY
Sbjct: 344  LGRAGFLEQAVEFIEGMPVQAGKDVYGALLGACRIHNNLELAKEVGEKLFILDPEKASRY 403

Query: 1111 IILAKMYEDAGRWTDAARVRKVLREKQIKKQPGCSAVEVNCLLHTFGVEDESHPLKGQIF 932
            + LA MYEDAG+W DAA++RK+LR++ I+K  GCS++EV+ + H FG +DE+HPL  +IF
Sbjct: 404  VTLATMYEDAGQWEDAAKLRKLLRDRNIRKPAGCSSIEVDRIHHVFGKKDETHPLTEEIF 463

Query: 931  DT 926
            DT
Sbjct: 464  DT 465


>ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
            mitochondrial-like [Glycine max]
          Length = 503

 Score =  162 bits (409), Expect = 2e-37
 Identities = 80/120 (66%), Positives = 98/120 (81%)
 Frame = -2

Query: 1291 LGRAGQLNEALELIESMPVKGGKDVYGALLGACRIHKNIELAEEAAERLFVLDPQNAGRY 1112
            LGRAG L +A+E I+SMP++ GK++YGALLGACRIHKN+ELAE AAE+LFVLDP NAGRY
Sbjct: 367  LGRAGDLEKAVEFIQSMPIQPGKNIYGALLGACRIHKNMELAELAAEKLFVLDPDNAGRY 426

Query: 1111 IILAKMYEDAGRWTDAARVRKVLREKQIKKQPGCSAVEVNCLLHTFGVEDESHPLKGQIF 932
            +ILA+MYEDA RW DAARVRKV+++K+IKK  G S+VE+      FGV DE+H    QIF
Sbjct: 427  VILAQMYEDAERWQDAARVRKVVKDKEIKKPIGYSSVELESGHQKFGVNDETHVHTTQIF 486


>gb|ACU21153.1| unknown [Glycine max]
          Length = 529

 Score =  162 bits (409), Expect = 2e-37
 Identities = 80/120 (66%), Positives = 98/120 (81%)
 Frame = -2

Query: 1291 LGRAGQLNEALELIESMPVKGGKDVYGALLGACRIHKNIELAEEAAERLFVLDPQNAGRY 1112
            LGRAG L +A+E I+SMP++ GK++YGALLGACRIHKN+ELAE AAE+LFVLDP NAGRY
Sbjct: 367  LGRAGDLEKAVEFIQSMPIQPGKNIYGALLGACRIHKNMELAELAAEKLFVLDPDNAGRY 426

Query: 1111 IILAKMYEDAGRWTDAARVRKVLREKQIKKQPGCSAVEVNCLLHTFGVEDESHPLKGQIF 932
            +ILA+MYEDA RW DAARVRKV+++K+IKK  G S+VE+      FGV DE+H    QIF
Sbjct: 427  VILAQMYEDAERWLDAARVRKVVKDKEIKKPIGYSSVELESGHQKFGVNDETHVHTTQIF 486