BLASTX nr result

ID: Coptis24_contig00001896 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001896
         (1548 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270912.1| PREDICTED: uncharacterized protein LOC100258...   337   5e-90
emb|CBI26931.3| unnamed protein product [Vitis vinifera]              318   3e-84
ref|XP_002305850.1| predicted protein [Populus trichocarpa] gi|2...   317   5e-84
ref|XP_002312427.1| predicted protein [Populus trichocarpa] gi|2...   313   8e-83
ref|XP_003536639.1| PREDICTED: uncharacterized protein LOC100792...   311   3e-82

>ref|XP_002270912.1| PREDICTED: uncharacterized protein LOC100258737 [Vitis vinifera]
            gi|296087202|emb|CBI33576.3| unnamed protein product
            [Vitis vinifera]
          Length = 262

 Score =  337 bits (864), Expect = 5e-90
 Identities = 168/267 (62%), Positives = 195/267 (73%), Gaps = 2/267 (0%)
 Frame = -2

Query: 1268 MGDHFVLLVDRLLTESTLEATIE-RSRSQHVTPSAVEADKTQFFSHKMDFGDGSPVK-MV 1095
            MGDHFVLLVDRLLTESTLEA IE +++ QH TP   E   T F +H+MD   G   + +V
Sbjct: 1    MGDHFVLLVDRLLTESTLEAAIESKNQWQHTTPCGSEDMMTNFSAHRMDVDIGPSQRILV 60

Query: 1094 ECRICQDEDEDFKMETPCSCCGSLKYAHRRCVQKWCNEKGDTICEICHQQFKPGYTAPPK 915
            +CRIC DEDED  ME PCSC GSLKYAHR CVQ+WCNEKG+T CEICHQQF+P YTAPP 
Sbjct: 61   QCRICHDEDEDSNMEVPCSCAGSLKYAHRGCVQRWCNEKGNTTCEICHQQFRPNYTAPPP 120

Query: 914  LFHYGGVPMNFRGNWEISRRDLHNPRFIAMVSTDCNFLDPDYDEYSMHTTRSLLCCRTVA 735
            LFHYGG+PMNFRGNWE+SRRD ++PRFIAMV++D NFLD D DEY    +RS++CCR VA
Sbjct: 121  LFHYGGIPMNFRGNWEVSRRDANHPRFIAMVASDRNFLDTDIDEYPAPNSRSVICCRIVA 180

Query: 734  IIFMVLLILRHTLPIIISGPEEYSXXXXXXXXLRTAGILLPVYIMVRAVTAIQHRRSQQX 555
            IIFM+LL+LRHTLPIIISG  EYS        LR  GILLPVYIMV+A TA Q RR QQ 
Sbjct: 181  IIFMILLVLRHTLPIIISGAGEYSFTLFTLLMLRAIGILLPVYIMVKACTAFQRRRHQQ- 239

Query: 554  XXXXXXXXXXXXXXXXXLQPQPHVIRV 474
                             +QPQP +I++
Sbjct: 240  -----DARNLPSDEENEMQPQPRIIQI 261


>emb|CBI26931.3| unnamed protein product [Vitis vinifera]
          Length = 277

 Score =  318 bits (814), Expect = 3e-84
 Identities = 159/248 (64%), Positives = 187/248 (75%), Gaps = 2/248 (0%)
 Frame = -2

Query: 1211 ATIE-RSRSQHVTPSAVEADKTQFFSHKMDFGDGS-PVKMVECRICQDEDEDFKMETPCS 1038
            A IE R+R    + SA+   K    SHKMDF  GS P K+VECRICQDEDED  METPCS
Sbjct: 30   AAIESRNRLMQASVSAIADTKVDCKSHKMDFKHGSSPRKLVECRICQDEDEDSNMETPCS 89

Query: 1037 CCGSLKYAHRRCVQKWCNEKGDTICEICHQQFKPGYTAPPKLFHYGGVPMNFRGNWEISR 858
            CCGSLKYAHR CVQ+WCNEKG+T+CEIC QQFKPGYTAPP LF + G+P+N RGNWEISR
Sbjct: 90   CCGSLKYAHRSCVQRWCNEKGNTMCEICQQQFKPGYTAPPPLFQFRGIPINLRGNWEISR 149

Query: 857  RDLHNPRFIAMVSTDCNFLDPDYDEYSMHTTRSLLCCRTVAIIFMVLLILRHTLPIIISG 678
             +L+NPRFIAMVSTD NFLDPDY+E++  T+RS++CCR+VAIIFMVLLILRHTLP++I+G
Sbjct: 150  GELNNPRFIAMVSTDRNFLDPDYNEFTTSTSRSMMCCRSVAIIFMVLLILRHTLPVMING 209

Query: 677  PEEYSXXXXXXXXLRTAGILLPVYIMVRAVTAIQHRRSQQXXXXXXXXXXXXXXXXXXLQ 498
             EEY+        LRTAGI+LP+YIM+RAVTAIQ RR +Q                  LQ
Sbjct: 210  AEEYTFPLFMLVLLRTAGIILPIYIMLRAVTAIQ-RRPRQQDPPTPYASTDEETEQPALQ 268

Query: 497  PQPHVIRV 474
            PQ H+I V
Sbjct: 269  PQTHIIHV 276


>ref|XP_002305850.1| predicted protein [Populus trichocarpa] gi|222848814|gb|EEE86361.1|
            predicted protein [Populus trichocarpa]
          Length = 237

 Score =  317 bits (812), Expect = 5e-84
 Identities = 157/235 (66%), Positives = 181/235 (77%), Gaps = 2/235 (0%)
 Frame = -2

Query: 1268 MGDHFVLLVDRLLTESTLEATIE-RSRSQHVTPSAVEADKTQFFSHKMDFGDGSPV-KMV 1095
            MGDHFV LVDRLLTESTLEA IE ++R +    SA + +  +F  H MD    S   K V
Sbjct: 1    MGDHFVFLVDRLLTESTLEAAIESQNRLRQTMASASKENTKEFSPHWMDLELTSLAGKSV 60

Query: 1094 ECRICQDEDEDFKMETPCSCCGSLKYAHRRCVQKWCNEKGDTICEICHQQFKPGYTAPPK 915
            ECRIC +E++D  ME PCSC GSLKYAHR+CVQ+WCNEKG+TICEICHQQF+PGYTAPP 
Sbjct: 61   ECRICHEEEDDMNMEMPCSCRGSLKYAHRKCVQRWCNEKGNTICEICHQQFEPGYTAPPP 120

Query: 914  LFHYGGVPMNFRGNWEISRRDLHNPRFIAMVSTDCNFLDPDYDEYSMHTTRSLLCCRTVA 735
            LF YG +PMNFRGNWEI RRDLHNP  IAMV+TD  FLD D+DEYS  + RS++CCR +A
Sbjct: 121  LFCYGAIPMNFRGNWEIPRRDLHNPPSIAMVTTDHEFLDSDFDEYSAPSPRSVMCCRIIA 180

Query: 734  IIFMVLLILRHTLPIIISGPEEYSXXXXXXXXLRTAGILLPVYIMVRAVTAIQHR 570
            IIFMVLL+LRHTL I+ISG  +YS        LRT GILLPVY+MVRA TAIQHR
Sbjct: 181  IIFMVLLVLRHTLAILISGAGDYSMTLFMLLILRTVGILLPVYVMVRAFTAIQHR 235


>ref|XP_002312427.1| predicted protein [Populus trichocarpa] gi|222852247|gb|EEE89794.1|
            predicted protein [Populus trichocarpa]
          Length = 233

 Score =  313 bits (802), Expect = 8e-83
 Identities = 152/233 (65%), Positives = 183/233 (78%), Gaps = 2/233 (0%)
 Frame = -2

Query: 1268 MGDHFVLLVDRLLTESTLEATIE-RSRSQHVTPSAVEADKTQFFSHKMDFGD-GSPVKMV 1095
            MGDHFVLLV+RLLTESTLEA IE R+ S   T S V+  K      KMDFGD  +P K+V
Sbjct: 1    MGDHFVLLVNRLLTESTLEAAIESRNLSMQATASTVDDTKIDKSFQKMDFGDISTPRKLV 60

Query: 1094 ECRICQDEDEDFKMETPCSCCGSLKYAHRRCVQKWCNEKGDTICEICHQQFKPGYTAPPK 915
            ECRICQDED+D  METPCSCCGSLKY HRRCVQ+WCNEKG+TICEICHQ+FKPGYTAPP 
Sbjct: 61   ECRICQDEDDDSNMETPCSCCGSLKYVHRRCVQRWCNEKGNTICEICHQEFKPGYTAPPP 120

Query: 914  LFHYGGVPMNFRGNWEISRRDLHNPRFIAMVSTDCNFLDPDYDEYSMHTTRSLLCCRTVA 735
            LF   G P+NFRGNWE SRR+L+ P FIA+VST+ NFL+ DYDEY+  TTR+ + CR +A
Sbjct: 121  LFQI-GFPVNFRGNWETSRRELNGPHFIAVVSTERNFLNNDYDEYAASTTRNAIYCRLIA 179

Query: 734  IIFMVLLILRHTLPIIISGPEEYSXXXXXXXXLRTAGILLPVYIMVRAVTAIQ 576
            ++FMVLLILRH+LP++++G    S        LRTAGI+L +Y+M++AVTAIQ
Sbjct: 180  VVFMVLLILRHSLPLVLNGTNNISFPVFMSLFLRTAGIILSIYVMLKAVTAIQ 232


>ref|XP_003536639.1| PREDICTED: uncharacterized protein LOC100792304 [Glycine max]
          Length = 271

 Score =  311 bits (797), Expect = 3e-82
 Identities = 160/270 (59%), Positives = 186/270 (68%), Gaps = 5/270 (1%)
 Frame = -2

Query: 1268 MGDHFVLLVDRLLTESTLEATIE-RSRSQHVTPSAVEADKTQFFSHKMDFGDGS-PVKMV 1095
            MGDHF LLVDRLLTESTLEA +E R+RS     SA    K      KM   D   P K+V
Sbjct: 1    MGDHFELLVDRLLTESTLEAALESRNRSILAASSAGNDAKIDLNLMKMGVDDIKFPGKVV 60

Query: 1094 ECRICQDEDEDFKMETPCSCCGSLKYAHRRCVQKWCNEKGDTICEICHQQFKPGYTAPPK 915
            ECRIC D+DED  METPCSC GSLKYAHRRC+Q+WCNEKGDT CEICHQQFKPGYTAPP 
Sbjct: 61   ECRICHDDDEDSNMETPCSCRGSLKYAHRRCIQRWCNEKGDTTCEICHQQFKPGYTAPPP 120

Query: 914  LFHYGGVPMNFRGNWEISRRDLHNPRFIAMVSTDCNFLDPDYDEYSMHTTRSLLCCRTVA 735
            LF +G +PM+FRGNWEISRRDL++   ++MV TD N    +YD+YS   T SL+CCR++A
Sbjct: 121  LFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNLTTSNYDQYSASATGSLICCRSIA 180

Query: 734  IIFMVLLILRHTLPIIISGPEEYSXXXXXXXXLRTAGILLPVYIMVRAVTAIQ-HRRS-- 564
            +IFMVLLILRHTLP++ISG +EYS         RTAG++LP+Y MVRAV  IQ HRR   
Sbjct: 181  VIFMVLLILRHTLPLVISGNKEYSFPLFLLMLFRTAGVVLPIYFMVRAVALIQRHRRQNR 240

Query: 563  QQXXXXXXXXXXXXXXXXXXLQPQPHVIRV 474
            +                    QPQPHVI V
Sbjct: 241  EHLNASASSSDDESEQADLQSQPQPHVIHV 270


Top