BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001879
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]    57   2e-06
ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron sp...    55   6e-06

>emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
          Length = 902

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 39/101 (38%), Positives = 50/101 (49%), Gaps = 18/101 (17%)
 Frame = +3

Query: 111 MSLVPTCQIYPT--AFFDSFSKFHGARVQLLRYGSSTHSNKFNFYVTHNSFSSNNVPDDK 284
           M+L+P+ Q YPT  +F DSF   H  R+Q  RYGSS      + YVT N+ +SN+     
Sbjct: 1   MALLPSRQFYPTTTSFLDSF---HSTRLQFFRYGSSNRFRTHSSYVTRNTIASNST---- 53

Query: 285 YPQPNSNIV----------------PKTSWIDKWNNAPYSK 359
            PQ  SNIV                   +WIDKW N P+ K
Sbjct: 54  NPQRKSNIVFTNTPVSQYDSGGVSSSGGNWIDKW-NGPHQK 93


>ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic [Vitis vinifera]
           gi|297737163|emb|CBI26364.3| unnamed protein product
           [Vitis vinifera]
          Length = 902

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 38/101 (37%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
 Frame = +3

Query: 111 MSLVPTCQIYPT--AFFDSFSKFHGARVQLLRYGSSTHSNKFNFYVTHNSFSSNNVPDDK 284
           M+L+P+ Q YPT  +F DSF   H  R+Q  RYGSS      + YV  N+ +SN+     
Sbjct: 1   MALLPSRQFYPTTTSFLDSF---HSTRLQFFRYGSSNRFRTHSSYVARNTIASNST---- 53

Query: 285 YPQPNSNIV----------------PKTSWIDKWNNAPYSK 359
            PQ  SNIV                   +WIDKW N P+ K
Sbjct: 54  NPQRKSNIVFTNTPVSQYDSGGVSSSGGNWIDKW-NGPHQK 93