BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001877
         (322 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK39810.1| unknown [Lotus japonicus] gi|388512023|gb|AFK4407...   176   2e-42
ref|XP_002529952.1| Photosystem II 10 kDa polypeptide, chloropla...   169   3e-40
gb|AAQ24852.1| 10 kDa photosystem II polypeptide [Trifolium prat...   169   3e-40
gb|ABI14811.1| chloroplast photosystem II light-inducible protei...   167   6e-40
ref|XP_002332206.1| hypothetical protein POPTRDRAFT_674736 [Popu...   165   3e-39

>gb|AFK39810.1| unknown [Lotus japonicus] gi|388512023|gb|AFK44073.1| unknown
           [Lotus japonicus]
          Length = 139

 Score =  176 bits (446), Expect = 2e-42
 Identities = 88/110 (80%), Positives = 99/110 (90%), Gaps = 7/110 (6%)
 Frame = +2

Query: 14  MMSSVTLKPS------SAVRGLPSLARTT-TFRVQASGVKKIKTDTPYGTGGGMDLRNGV 172
           +M+SV+LKP+      S+VRGLPSL+R++ +FRV ASG KKIKTDTPYGTGGGM+LRNGV
Sbjct: 5   VMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGV 64

Query: 173 DASGRKPTGKGVYQFVDKYGANVDGYSPIYDEKDWSPTGDVYAGGTTGLA 322
           DASGRKP GKGVYQ+VDKYGANVDGYSPIYD KDWSPTGDVYAGGTTGLA
Sbjct: 65  DASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLA 114


>ref|XP_002529952.1| Photosystem II 10 kDa polypeptide, chloroplast precursor, putative
           [Ricinus communis] gi|223530550|gb|EEF32429.1|
           Photosystem II 10 kDa polypeptide, chloroplast
           precursor, putative [Ricinus communis]
          Length = 138

 Score =  169 bits (427), Expect = 3e-40
 Identities = 84/110 (76%), Positives = 95/110 (86%), Gaps = 7/110 (6%)
 Frame = +2

Query: 14  MMSSVTLKPS-------SAVRGLPSLARTTTFRVQASGVKKIKTDTPYGTGGGMDLRNGV 172
           +M+SV+LKPS       S+VRGLP+L+R T FR++ASG KKIKTD PYG GGGM+LRNGV
Sbjct: 5   VMASVSLKPSPFTVQKSSSVRGLPTLSRRT-FRIEASGGKKIKTDKPYGIGGGMELRNGV 63

Query: 173 DASGRKPTGKGVYQFVDKYGANVDGYSPIYDEKDWSPTGDVYAGGTTGLA 322
           DASGRKPTGKGVYQFVDKYGANVDGYSPIY+  +WSPTGDVYAGG TGLA
Sbjct: 64  DASGRKPTGKGVYQFVDKYGANVDGYSPIYNTDEWSPTGDVYAGGATGLA 113


>gb|AAQ24852.1| 10 kDa photosystem II polypeptide [Trifolium pratense]
          Length = 136

 Score =  169 bits (427), Expect = 3e-40
 Identities = 85/109 (77%), Positives = 94/109 (86%), Gaps = 6/109 (5%)
 Frame = +2

Query: 14  MMSSVTLKPS------SAVRGLPSLARTTTFRVQASGVKKIKTDTPYGTGGGMDLRNGVD 175
           +M+SV+LKP+      S+VRGLP+L+R   FRV ASGVKKIKTDTPYGTGGGMDL NG+D
Sbjct: 5   VMASVSLKPTPFMVEKSSVRGLPNLSRP--FRVVASGVKKIKTDTPYGTGGGMDLPNGLD 62

Query: 176 ASGRKPTGKGVYQFVDKYGANVDGYSPIYDEKDWSPTGDVYAGGTTGLA 322
           ASGRK  GKGVYQFVDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLA
Sbjct: 63  ASGRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLA 111


>gb|ABI14811.1| chloroplast photosystem II light-inducible protein [Pachysandra
           terminalis]
          Length = 138

 Score =  167 bits (424), Expect = 6e-40
 Identities = 84/111 (75%), Positives = 96/111 (86%), Gaps = 6/111 (5%)
 Frame = +2

Query: 5   STVMMSSVTLKPS-----SAVRGLPSLAR-TTTFRVQASGVKKIKTDTPYGTGGGMDLRN 166
           +T +MSS++LK S     SA RGLPSLAR +++FRV+ASGVKKIKTD PYGTGGGM LR+
Sbjct: 2   ATSVMSSLSLKASPFLEKSAARGLPSLARPSSSFRVEASGVKKIKTDKPYGTGGGMSLRD 61

Query: 167 GVDASGRKPTGKGVYQFVDKYGANVDGYSPIYDEKDWSPTGDVYAGGTTGL 319
           G+DASGRKP GKGVYQFVDKYGANVDGYSPIYD+ DWSP+G VY GGTTGL
Sbjct: 62  GLDASGRKPKGKGVYQFVDKYGANVDGYSPIYDQXDWSPSGAVYVGGTTGL 112


>ref|XP_002332206.1| hypothetical protein POPTRDRAFT_674736 [Populus trichocarpa]
           gi|118487848|gb|ABK95747.1| unknown [Populus
           trichocarpa] gi|222875313|gb|EEF12444.1| hypothetical
           protein POPTRDRAFT_674736 [Populus trichocarpa]
          Length = 137

 Score =  165 bits (418), Expect = 3e-39
 Identities = 80/108 (74%), Positives = 96/108 (88%), Gaps = 6/108 (5%)
 Frame = +2

Query: 14  MMSSVTLKPS------SAVRGLPSLARTTTFRVQASGVKKIKTDTPYGTGGGMDLRNGVD 175
           +M+S++LKPS      S+VRGLP+L+R T F+++ASGVKKIKTDTPYGTGGGM+LR+G+D
Sbjct: 5   VMASLSLKPSPFTVEKSSVRGLPTLSRRT-FKIEASGVKKIKTDTPYGTGGGMNLRDGLD 63

Query: 176 ASGRKPTGKGVYQFVDKYGANVDGYSPIYDEKDWSPTGDVYAGGTTGL 319
           ASGRKP GKGVYQ+VDKYGANVDGYSPIY+  +WSPTGDVYAGG TGL
Sbjct: 64  ASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGKTGL 111