BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001874
         (1351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004143621.1| PREDICTED: mediator of RNA polymerase II tra...   434   e-119
ref|XP_004140765.1| PREDICTED: mediator of RNA polymerase II tra...   434   e-119
ref|XP_003634097.1| PREDICTED: rRNA 2'-O-methyltransferase fibri...   433   e-119
ref|XP_002271480.1| PREDICTED: rRNA 2'-O-methyltransferase fibri...   433   e-119
ref|XP_002318803.1| predicted protein [Populus trichocarpa] gi|2...   433   e-119

>ref|XP_004143621.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            36a-like [Cucumis sativus]
          Length = 280

 Score =  434 bits (1116), Expect = e-119
 Identities = 210/246 (85%), Positives = 235/246 (95%)
 Frame = +1

Query: 310  MKGGSKVVVEPHRHQGVFIAKGREDALVTKNLVPGEAVYGEKRVSVQSEDGTKIEYRVWN 489
            MKGGSKV+VEPHRH+G+FIAKG+EDALVTKN+V GE+VY EKR+S+Q+EDGTK+EYRVWN
Sbjct: 36   MKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISIQNEDGTKVEYRVWN 95

Query: 490  PFRSKLASAILGGIDNVYIVPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGR 669
            PFRSKLA+A+LGG+D+++I PGA+VLYLGAASGTTVSHVSD+VGPTG+VYAVEFSHRSGR
Sbjct: 96   PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 155

Query: 670  DLVNMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKNGG 849
            DLVNMAKKRTN+IPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK GG
Sbjct: 156  DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 215

Query: 850  NFVISIKANCIDSTIPAEHVFASEVKKLQVDQFKPKEQVTLEPFERDHACVVGIYRDPNK 1029
            +FVISIKANCIDST+PAE VFASEV KL+ DQFKP EQVTLEPFERDHACVVGIYR P K
Sbjct: 216  HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP-K 274

Query: 1030 KQKVAS 1047
            KQK A+
Sbjct: 275  KQKAAA 280


>ref|XP_004140765.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            36a-like [Cucumis sativus]
            gi|449485505|ref|XP_004157191.1| PREDICTED: mediator of
            RNA polymerase II transcription subunit 36a-like [Cucumis
            sativus]
          Length = 309

 Score =  434 bits (1116), Expect = e-119
 Identities = 213/246 (86%), Positives = 235/246 (95%)
 Frame = +1

Query: 310  MKGGSKVVVEPHRHQGVFIAKGREDALVTKNLVPGEAVYGEKRVSVQSEDGTKIEYRVWN 489
            MKGGSKVVVEPHRH+G+FIAKG+EDALVTKN+V GE+VY EKRVSVQ+EDGTKIEYRVWN
Sbjct: 63   MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVTGESVYNEKRVSVQNEDGTKIEYRVWN 122

Query: 490  PFRSKLASAILGGIDNVYIVPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGR 669
            PFRSKLA+A+LGG+D+++I PGA+VLYLGAASGTTVSHVSD+VGP+G+VYAVEFSHRSGR
Sbjct: 123  PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPSGIVYAVEFSHRSGR 182

Query: 670  DLVNMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKNGG 849
            DLVNMAKKRTN+IPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK GG
Sbjct: 183  DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 242

Query: 850  NFVISIKANCIDSTIPAEHVFASEVKKLQVDQFKPKEQVTLEPFERDHACVVGIYRDPNK 1029
            +FVISIKANCIDST+PAE VFASEV KL+ DQFKP EQVTLEPFERDHACVVGIYR P K
Sbjct: 243  HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP-K 301

Query: 1030 KQKVAS 1047
            KQK A+
Sbjct: 302  KQKAAA 307


>ref|XP_003634097.1| PREDICTED: rRNA 2'-O-methyltransferase fibrillarin 2-like isoform 2
            [Vitis vinifera]
          Length = 316

 Score =  433 bits (1114), Expect = e-119
 Identities = 212/245 (86%), Positives = 231/245 (94%)
 Frame = +1

Query: 310  MKGGSKVVVEPHRHQGVFIAKGREDALVTKNLVPGEAVYGEKRVSVQSEDGTKIEYRVWN 489
            MKGGS+VVVEPHRH+GVFIAKG+EDALVTKN+VPGEAVY EKR+SVQ+EDG+KIEYRVWN
Sbjct: 72   MKGGSRVVVEPHRHEGVFIAKGKEDALVTKNMVPGEAVYNEKRISVQNEDGSKIEYRVWN 131

Query: 490  PFRSKLASAILGGIDNVYIVPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGR 669
            PFRSKLA+AILGG+D ++I PGA+VLYLGAASGTTVSHVSD+VGPTGVVYAVEFSHRSGR
Sbjct: 132  PFRSKLAAAILGGVDEIWIKPGARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGR 191

Query: 670  DLVNMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKNGG 849
            DLVNMAKKRTN+IPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK GG
Sbjct: 192  DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 251

Query: 850  NFVISIKANCIDSTIPAEHVFASEVKKLQVDQFKPKEQVTLEPFERDHACVVGIYRDPNK 1029
            +FVISIKANCIDST+PAE VFA EVKKLQ D FKP EQVTLEPFERDHACVVG YR P K
Sbjct: 252  HFVISIKANCIDSTVPAEAVFAQEVKKLQADMFKPSEQVTLEPFERDHACVVGGYRMPKK 311

Query: 1030 KQKVA 1044
            ++  A
Sbjct: 312  QKPTA 316


>ref|XP_002271480.1| PREDICTED: rRNA 2'-O-methyltransferase fibrillarin 2-like isoform 1
            [Vitis vinifera]
          Length = 311

 Score =  433 bits (1114), Expect = e-119
 Identities = 212/245 (86%), Positives = 231/245 (94%)
 Frame = +1

Query: 310  MKGGSKVVVEPHRHQGVFIAKGREDALVTKNLVPGEAVYGEKRVSVQSEDGTKIEYRVWN 489
            MKGGS+VVVEPHRH+GVFIAKG+EDALVTKN+VPGEAVY EKR+SVQ+EDG+KIEYRVWN
Sbjct: 67   MKGGSRVVVEPHRHEGVFIAKGKEDALVTKNMVPGEAVYNEKRISVQNEDGSKIEYRVWN 126

Query: 490  PFRSKLASAILGGIDNVYIVPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGR 669
            PFRSKLA+AILGG+D ++I PGA+VLYLGAASGTTVSHVSD+VGPTGVVYAVEFSHRSGR
Sbjct: 127  PFRSKLAAAILGGVDEIWIKPGARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGR 186

Query: 670  DLVNMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKNGG 849
            DLVNMAKKRTN+IPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK GG
Sbjct: 187  DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 246

Query: 850  NFVISIKANCIDSTIPAEHVFASEVKKLQVDQFKPKEQVTLEPFERDHACVVGIYRDPNK 1029
            +FVISIKANCIDST+PAE VFA EVKKLQ D FKP EQVTLEPFERDHACVVG YR P K
Sbjct: 247  HFVISIKANCIDSTVPAEAVFAQEVKKLQADMFKPSEQVTLEPFERDHACVVGGYRMPKK 306

Query: 1030 KQKVA 1044
            ++  A
Sbjct: 307  QKPTA 311


>ref|XP_002318803.1| predicted protein [Populus trichocarpa] gi|222859476|gb|EEE97023.1|
            predicted protein [Populus trichocarpa]
          Length = 245

 Score =  433 bits (1114), Expect = e-119
 Identities = 216/246 (87%), Positives = 234/246 (95%)
 Frame = +1

Query: 310  MKGGSKVVVEPHRHQGVFIAKGREDALVTKNLVPGEAVYGEKRVSVQSEDGTKIEYRVWN 489
            MKGGSKVVVEPHRH+GVFIAKG+EDALVTKN+VPGE VY EK++SVQ+EDGTK+EYRVWN
Sbjct: 1    MKGGSKVVVEPHRHEGVFIAKGKEDALVTKNMVPGETVYNEKKISVQNEDGTKVEYRVWN 60

Query: 490  PFRSKLASAILGGIDNVYIVPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGR 669
            PFRSKLASAILGG+D+V+I PGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGR
Sbjct: 61   PFRSKLASAILGGVDDVWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGR 120

Query: 670  DLVNMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKNGG 849
            DLVNMAKKRTN+IPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK+GG
Sbjct: 121  DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKSGG 180

Query: 850  NFVISIKANCIDSTIPAEHVFASEVKKLQVDQFKPKEQVTLEPFERDHACVVGIYRDPNK 1029
            +FVISIKANCIDST+PAE VF SEVKK+  +Q KP EQVTLEPFERDHACVVG YR P K
Sbjct: 181  HFVISIKANCIDSTVPAEAVFESEVKKMVQEQLKPTEQVTLEPFERDHACVVGGYRMP-K 239

Query: 1030 KQKVAS 1047
            KQKVA+
Sbjct: 240  KQKVAA 245