BLASTX nr result
ID: Coptis24_contig00001856
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00001856
(1762 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI25128.3| unnamed protein product [Vitis vinifera] 268 3e-69
ref|XP_002522106.1| conserved hypothetical protein [Ricinus comm... 250 1e-63
ref|XP_002276156.1| PREDICTED: F-box protein SKIP22 [Vitis vinif... 245 2e-62
gb|AFK46566.1| unknown [Medicago truncatula] 237 6e-60
ref|XP_002327736.1| predicted protein [Populus trichocarpa] gi|2... 227 7e-57
>emb|CBI25128.3| unnamed protein product [Vitis vinifera]
Length = 508
Score = 268 bits (685), Expect = 3e-69
Identities = 192/489 (39%), Positives = 253/489 (51%), Gaps = 36/489 (7%)
Frame = -3
Query: 1760 LRIRCLETRQTLKISIQTNPSLENLKETIAEKIXXXXXXXXXXXL---NRQEEI-IASPN 1593
LR+R LE+++TLKI + SL++ ++ I NR++E+ ++S
Sbjct: 3 LRVRSLESKETLKIQVPDPCSLQHFIHLLSLAISSSSSSSSSIIYLSLNRKDELQVSSSL 62
Query: 1592 DSLTSLGIASGDLIYYTLNTNGFSLQS-------SNQVSTQTLMDIDTVC---------- 1464
D+L SLG+ SGDLI+Y+ N FS SN +TL++ T+
Sbjct: 63 DTLQSLGVTSGDLIFYSFNPTAFSQTPIPSETLVSNSERKETLLESQTLAPLAQANPHEP 122
Query: 1463 ------TNSDKKNESFDDLKHTQXXXXXXXXXXXXXXXXXV-KKFSSVPCFLQKVXXXXX 1305
+ KKNE+ + T V KK S PCFL+KV
Sbjct: 123 KEYGSLVSDSKKNETQEFSGATSMDVEGGVAAADEDDEPIVVKKSFSEPCFLRKVLREEV 182
Query: 1304 XXXXXXXXXXXXXXKLLMIAVHAVFLESGFVCFDSLTGKKMEGFRFPEDWKFR-----LR 1140
LL+IAVHAV LESGFV FDS++G +++ F E++ F L
Sbjct: 183 GDDGNEHK-------LLVIAVHAVMLESGFVGFDSVSGMRVDRFHLSEEYPFAAISMSLW 235
Query: 1139 YTVPDLLDGGGHEK--FEIVDLKFSTLGKFVNVHGFLSRNSLDMFRACLDKSRFAPSVEF 966
YT+P+LLD G + + V LKF LG+F+N++G LS N + LD+ RFAP+++
Sbjct: 236 YTLPELLDHGCDDSPAIQSVALKFQHLGQFINIYGSLSGNRSTVHWVSLDEYRFAPTLDL 295
Query: 965 VCLNCGLAGEEKETDESLKSFHEKKVFELWKIVKDELALPLLINLCEKNGLGSPPCFSVL 786
+ + A EEK+ S S+ E +VFE WKIVKD LALPLL +LCEK GL PPC L
Sbjct: 296 MWTHSDSA-EEKDRGSS-NSYPENEVFEFWKIVKDGLALPLLTDLCEKGGLLPPPCLMRL 353
Query: 785 PTDLKLKILEFVSGTDLAKVGCASSELRYLSSNNDLWKQKYVEEFSLVDSGDTTNNNWKE 606
PT+LKLKILE + G DL KVGC SEL YLSSNNDLWKQK+ EEF V G + WK+
Sbjct: 354 PTELKLKILELLPGVDLGKVGCVCSELMYLSSNNDLWKQKFTEEFGNVRVGQGF-SLWKD 412
Query: 605 KFVVCRERNKKRK-VRSYFLPFTQPRLPYFVPGQREPRXXXXXXXXXGDYDLFPAPFGSN 429
KF E KKRK V F P + P +R+P GDYD FPA G
Sbjct: 413 KFATWWENRKKRKRVSGMCTWFPSLEAPSYFPIRRDPNPFAIPPTIGGDYDHFPA-LGIP 471
Query: 428 SGLRLPARR 402
S P RR
Sbjct: 472 SPFGQPGRR 480
>ref|XP_002522106.1| conserved hypothetical protein [Ricinus communis]
gi|223538705|gb|EEF40306.1| conserved hypothetical
protein [Ricinus communis]
Length = 523
Score = 250 bits (638), Expect = 1e-63
Identities = 185/537 (34%), Positives = 261/537 (48%), Gaps = 71/537 (13%)
Frame = -3
Query: 1760 LRIRCLETRQTLKISIQTNPSLENLKETI--AEKIXXXXXXXXXXXLNRQEEIIASP-ND 1590
LR+R +E+++T+K+ + + +L+ LKET+ A LNR++E+++S D
Sbjct: 3 LRLRSVESKETVKLEVPNDCNLQQLKETLILALSSSSSSSSSLHFSLNRKDELLSSSLQD 62
Query: 1589 SLTSLGIASGDLIYYTLNTNGFSLQSSNQVSTQTLMD----------------------- 1479
SL SLGI SGDLIY+T +G S Q +T +
Sbjct: 63 SLQSLGITSGDLIYFTQKPDGL-FSPSQQTQQRTFQESESFAQENAAQLNIKEPSSKEIE 121
Query: 1478 ----IDTVCTNSDKKNESFDD--LKHTQXXXXXXXXXXXXXXXXXVKKFS---------- 1347
++ + N + SF D +K T+ + ++
Sbjct: 122 ISEELEVIGLNCSNQETSFQDSSIKETRQGLPAVSNTQFGETLENDQGYARGDDMDVGTE 181
Query: 1346 -----------SVPCFLQKVXXXXXXXXXXXXXXXXXXXKLLMIAVHAVFLESGFVCFDS 1200
S PCFL++V LL IA+HAVFLESGFV FDS
Sbjct: 182 SADVDVKSKRISEPCFLKRVLGEEDFAVDFSDNK------LLFIAIHAVFLESGFVGFDS 235
Query: 1199 LTGKKMEGFRFPED-----WKFRLRYTVPDLLDGGGHEKFEIVDLKFSTLGKFVNVHGFL 1035
++G +++ F ++ + + YT+P+LLD + V LKF TLG+FVNV+G +
Sbjct: 236 VSGLRVDLFHLLQEQPLMNFTTSVSYTLPELLDNDN--VIDSVVLKFQTLGQFVNVYGSV 293
Query: 1034 SRNSLDMFRACLDKSRFAPSVEFVCLNCGLAGEEKETDESLKSFHEKKVFELWKIVKDEL 855
+++ ++R+CLDK R+ P++ + + ++ +T S+ E VFELWKIVKD L
Sbjct: 294 AKSRSLVYRSCLDKCRYVPAIGSIWITW----DKSDTAYENNSYTENVVFELWKIVKDHL 349
Query: 854 ALPLLINLCEKNGLGSPPCFSVLPTDLKLKILEFVSGTDLAKVGCASSELRYLSSNNDLW 675
ALPLLI+LCEK GL PPC LP D+K KILE + G +A++ C E++YLSS+NDLW
Sbjct: 350 ALPLLIDLCEKTGLVLPPCLMRLPADIKHKILESLPGIAIARMACVCKEMQYLSSSNDLW 409
Query: 674 KQKYVEEFSLVDSGDTTNN--NWKEKFVVCRERNKKRKVRSYFLP-----FTQPRLPYFV 516
KQKY EEF SG NWK KF E KKR+ RS+ P + V
Sbjct: 410 KQKYGEEFG---SGTLQQEMVNWKVKFASSWENRKKRRKRSFVRPTPVNFIRSEPYRFMV 466
Query: 515 PGQREPRXXXXXXXXXGDYDLFPA-----PFGS-NSGLRLPARRNFVRHCNLDGFNA 363
P Q R GDYD P PFG LR RRN +CNL GFNA
Sbjct: 467 PPQIGSR-----IIIGGDYDRLPGLGVPPPFGQPGRNLRNIVRRNISPNCNLGGFNA 518
>ref|XP_002276156.1| PREDICTED: F-box protein SKIP22 [Vitis vinifera]
gi|147804806|emb|CAN73524.1| hypothetical protein
VITISV_010705 [Vitis vinifera]
Length = 563
Score = 245 bits (626), Expect = 2e-62
Identities = 158/345 (45%), Positives = 195/345 (56%), Gaps = 15/345 (4%)
Frame = -3
Query: 1358 KKFSSVPCFLQKVXXXXXXXXXXXXXXXXXXXKLLMIAVHAVFLESGFVCFDSLTGKKME 1179
KK S PCFL+KV LL+IAVHAV LESGFV FDS++G +++
Sbjct: 227 KKSFSEPCFLRKVLREEVGDDGNEHK-------LLVIAVHAVMLESGFVGFDSVSGMRVD 279
Query: 1178 GFRFPEDWKFR-----LRYTVPDLLDGGGHEK--FEIVDLKFSTLGKFVNVHGFLSRNSL 1020
F E++ F L YT+P+LLD G + + V LKF LG+F+N++G LS N
Sbjct: 280 RFHLSEEYPFAAISMSLWYTLPELLDHGCDDSPAIQSVALKFQHLGQFINIYGSLSGNRS 339
Query: 1019 DMFRACLDKSRFAPSVEFVCLNCGLAGEEKETDESLKSFHEKKVFELWKIVKDELALPLL 840
+ LD+ RFAP+++ + + A EEK+ S S+ E +VFE WKIVKD LALPLL
Sbjct: 340 TVHWVSLDEYRFAPTLDLMWTHSDSA-EEKDRGSS-NSYPENEVFEFWKIVKDGLALPLL 397
Query: 839 INLCEKNGLGSPPCFSVLPTDLKLKILEFVSGTDLAKVGCASSELRYLSSNNDLWKQKYV 660
+LCEK GL PPC LPT+LKLKILE + G DL KVGC SEL YLSSNNDLWKQK+
Sbjct: 398 TDLCEKGGLLPPPCLMRLPTELKLKILELLPGVDLGKVGCVCSELMYLSSNNDLWKQKFT 457
Query: 659 EEFSLVDSGDTTNNNWKEKFVVCRERNKKRK-VRSYFLPFTQPRLPYFVPGQREPRXXXX 483
EEF V G + WK+KF E KKRK V F P + P +R+P
Sbjct: 458 EEFGNVRVGQGF-SLWKDKFATWWENRKKRKRVSGMCTWFPSLEAPSYFPIRRDPNPFAI 516
Query: 482 XXXXXGDYDLFPA-----PFGSNSGL--RLPARRNFVRHCNLDGF 369
GDYD FPA PFG R A RN + CNL GF
Sbjct: 517 PPTIGGDYDHFPALGIPSPFGQPGRRYHRFLAPRNTIPRCNLGGF 561
>gb|AFK46566.1| unknown [Medicago truncatula]
Length = 462
Score = 237 bits (605), Expect = 6e-60
Identities = 181/489 (37%), Positives = 247/489 (50%), Gaps = 25/489 (5%)
Frame = -3
Query: 1760 LRIRCLETRQTLKISIQTNPSLENLKETIAEKIXXXXXXXXXXXLNRQEEI-IASPNDSL 1584
LR+R LE+++TLKI + + S + LK TI++ I LNR++EI +ASP+DSL
Sbjct: 3 LRLRSLESKETLKIEVPDSCSSQQLKFTISQTIPSSSSSSIHLSLNRKDEINVASPSDSL 62
Query: 1583 TSLGIASGDLIYYTLNTNGFSLQSS--NQVSTQTLMDIDTVCTNSDKKNESFDDLKHTQX 1410
S+GIASGDLI+YT N N FS + ++ + Q ++ T D+K+ + + +
Sbjct: 63 HSIGIASGDLIFYTFNPNAFSHNETLPHKPNNQPIIQNSPEITPIDEKSPTLNTPEVNDT 122
Query: 1409 XXXXXXXXXXXXXXXXVKKFSSVPCFLQKVXXXXXXXXXXXXXXXXXXXKLLMIAVHAVF 1230
VK + P F+++V LL+ AVHAV
Sbjct: 123 EMVDGSDEAATAMTMAVKN-NPEPDFVKRVIKEALGDDVSDLK-------LLVFAVHAVI 174
Query: 1229 LESGFVCFDSLTGKKMEGFRFPEDWK---------------FRLRYTVPDLLDGGGHEKF 1095
LESGFV D ++G + +D LRYT+P++L G
Sbjct: 175 LESGFVRVDEVSGMAISCSNLVDDMSSSSSSSSSSSSSSSMISLRYTLPEILTNGSSHA- 233
Query: 1094 EIVDLKFSTLGKFVNVHGFLSRNSLD-MFRACLDKSRFAPSVEFVCLNCGLAGEEKETDE 918
V LK TLG FVNV+G L ++ + R LDKSRFA +E + N G + +
Sbjct: 234 --VILKIQTLGNFVNVYGSLCDDAGSRVHRVYLDKSRFAKPLELMLENSEFNGNFNDVGD 291
Query: 917 SLKSFHEKKVFELWKIVKDELALPLLINLCEKNGLGSPPCFSVLPTDLKLKILEFVSGTD 738
KVFELWKIVKD LALPLLI+LC+K GL PPCF LP +LKL I E++ G D
Sbjct: 292 --------KVFELWKIVKDGLALPLLIDLCDKAGLELPPCFMRLPMELKLLIFEYLPGDD 343
Query: 737 LAKVGCASSELRYLSSNNDLWKQKYVEEFSLVDSGDTTNNNWKEKFVVCRERNKKRKVRS 558
LAKV C SEL+YL+SN+DLWK+K+ EEF G N K + + R K+K+
Sbjct: 344 LAKVCCTCSELQYLASNDDLWKKKFEEEF-----GQRVNGMKFFKNLFAQYRATKKKLEQ 398
Query: 557 YFLPFTQPR---LPYFVPGQREPRXXXXXXXXXGDYDLFPAPFGSNSGLRLPA---RRNF 396
L F PR + F +R P G+YDL P N G+ LPA RR F
Sbjct: 399 PIL-FQNPRRSGIMRFFQRRRFPNRFGMPPIWGGEYDLQP-----NFGVNLPAYARRRTF 452
Query: 395 VRHCNLDGF 369
+ C+L F
Sbjct: 453 IPPCHLGEF 461
>ref|XP_002327736.1| predicted protein [Populus trichocarpa] gi|222836821|gb|EEE75214.1|
predicted protein [Populus trichocarpa]
Length = 545
Score = 227 bits (579), Expect = 7e-57
Identities = 140/315 (44%), Positives = 189/315 (60%), Gaps = 16/315 (5%)
Frame = -3
Query: 1259 LLMIAVHAVFLESGFVCFDSLTGKKMEGFRFPEDWKFR-----LRYTVPDLLDGGGHEKF 1095
LL+IAVHAVF+ESGFV F+S++G +++GF PE+ R L YT+P+LLD
Sbjct: 243 LLVIAVHAVFIESGFVGFNSISGMRVDGFHLPEEQSSRNLAVSLCYTLPELLDS--KVIA 300
Query: 1094 EIVDLKFSTLGKFVNVHGFLSRNSLDMFRACLDKSRFAPSVEFVC---LNCGLAGEEKET 924
E + LK +LG FVNV+G LS+ ++ A LD ++F P+++FV N G+ G +
Sbjct: 301 ETIVLKLQSLGHFVNVYGSLSKGGSGLYHARLDINKFVPAIDFVWENDKNDGMNG----S 356
Query: 923 DESLKSFHEKKVFELWKIVKDELALPLLINLCEKNGLGSPPCFSVLPTDLKLKILEFVSG 744
D S + E ++FE WKIVKD LALPLLI++CEK GL P C LPT+LKLKI E +
Sbjct: 357 DRSSILYPENEIFEFWKIVKDGLALPLLIDICEKAGLVLPSCLMRLPTELKLKIFELLPA 416
Query: 743 TDLAKVGCASSELRYLSSNNDLWKQKYVEEFSLVDSGDTT----NNNWKEKFVVCRERNK 576
D+AK+ C SE+RYLSSNNDLWKQK+VEEF GD T NWK +F E K
Sbjct: 417 IDIAKMECVCSEMRYLSSNNDLWKQKFVEEF-----GDGTAAHGTLNWKARFASYWENKK 471
Query: 575 KRKVRSYFLPFTQPRLPYFVPGQREPRXXXXXXXXXGDYDLFPA---PFGSNSGLRLP-A 408
+++ + + + Q LP+ VP +R+P GDYD P P G+ P
Sbjct: 472 RKRDFNAWQEYRQ-FLPFHVPIRRDPNPLWCPSIIGGDYDRLPGLGIPPYRRPGIGWPQP 530
Query: 407 RRNFVRHCNLDGFNA 363
R NF +CNL GF++
Sbjct: 531 RHNFSPNCNLGGFSS 545
Score = 60.1 bits (144), Expect = 2e-06
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = -3
Query: 1760 LRIRCLETRQTLKISIQTNPSLENLKETIAEKIXXXXXXXXXXXLNRQEEIIASPNDSLT 1581
LR+R +++++T+KI + + +L+ LKET++ I + E + P DSL
Sbjct: 3 LRLRSVQSKETVKIQVPDSCTLQQLKETLSRAISSSGSSLYLSLNRKDELNTSLPEDSLQ 62
Query: 1580 SLGIASGDLIYYTLNTNGFS 1521
SLGI SGDLIY+++N FS
Sbjct: 63 SLGITSGDLIYFSVNPKDFS 82