BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001515
         (1974 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...   242   4e-99
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   256   5e-95
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...   240   3e-94
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...   250   6e-93
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...   239   2e-90

>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
            gi|7267666|emb|CAB78094.1| RNA-directed DNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score =  242 bits (618), Expect(3) = 4e-99
 Identities = 122/285 (42%), Positives = 174/285 (61%)
 Frame = -1

Query: 1860 MTIKLDLSKTFDKVEWSFLLETMEGLGFSEKWRNWINQCISTTSLSFKINGSPMSFLKPE 1681
            M IK D+SK +D+++W+FL E +  LGF +KW  W+ QC+ T S SF INGSP   + P 
Sbjct: 512  MAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPS 571

Query: 1680 *GIRQGDPLSPFLFIICMEVFSRLLSKVEKERQIHGVKISRSDTTMSHLLFADDSFIFCR 1501
             G+RQGDPLSP+LFI+C EV S L  K +++  + G++++R    ++HLLFADD+  FC+
Sbjct: 572  RGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCK 631

Query: 1500 ANIAETHHLKDILELFKNVSGQEIYFQKSGIFFSHNTHHRHQRIVKRILKIGKTITHEKY 1321
             N      L +IL+ ++  SGQ I   KS I FS  T    +R VK  L+I       KY
Sbjct: 632  TNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIGKY 691

Query: 1320 LGAPLILRRKSRIDFDEVLERVSQRMEGWRAKLLSQAGKLTLIKAVTSAIPSYMMSVFQL 1141
            LG P    R+ R  F  +++R+ QR   W  + LS AGK  L+KAV S++PSY M  F+L
Sbjct: 692  LGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKL 751

Query: 1140 PTSTCNKLNSLNASFFWRRKEDNTNKVHYISWNKICLPKSSGGWG 1006
            P S C ++ S+   F+W  K D   K+ ++SW+K+ LP + GG G
Sbjct: 752  PASLCKQIQSVLTRFWWDSKPDK-RKMAWVSWDKLTLPINEGGLG 795



 Score =  137 bits (344), Expect(3) = 4e-99
 Identities = 83/245 (33%), Positives = 119/245 (48%)
 Frame = -3

Query: 1015 GLGIRRASHHNIALQAKLFWRIFKEPDKPRVVSLLKKYVRGNSILRVKCPRRGASKIWQG 836
            GLG R        ++AKL WRI KEP       LL KY   +S +        AS  W+G
Sbjct: 793  GLGFRE-------IEAKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHGWRG 845

Query: 835  ILKARDAILPKLCWHIGTGNDIDIWLDPWIPTLPYNKPMGPMPPVGPFRCVADLIDPENR 656
            IL  RD +   L W IG G+ I++W + W+       P+GP         V DLI  + +
Sbjct: 846  ILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLSVHDLICHDVK 905

Query: 655  SWKRNVLDTIFLPATVKEILKVPLSRQEHNDSIRWLEETNGELTVKSVYKYLSESTYTDQ 476
            SW    +    LP    +I K+ ++     DS+ WL   +GE T K+ Y     +++   
Sbjct: 906  SWNVEAIRK-HLPQYEDQIRKITINALPLQDSLVWLPVKSGEYTTKTGYALAKLNSFPAS 964

Query: 475  NQN*QLWKSIWNLNTAEKVKLFFWKAIRNSLPTREKLVNRNIISSATCPRCSNQVESTHH 296
              +    K+IW ++T+ KVK F WKA++ +LP  E L  RNI +  TC RC  Q ES+ H
Sbjct: 965  QLDFNWQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRC-GQTESSLH 1023

Query: 295  ALFHC 281
             +  C
Sbjct: 1024 LMLLC 1028



 Score = 32.7 bits (73), Expect(3) = 4e-99
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -3

Query: 1972 ISPSQSVFVKGRQIFDNIVLAHEIVCTLK---RKKRC 1871
            IS  QS FV GR I DN+++ HEI+  L+    KK C
Sbjct: 474  ISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYC 510


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  256 bits (653), Expect(3) = 5e-95
 Identities = 119/287 (41%), Positives = 182/287 (63%)
 Frame = -1

Query: 1866 GCMTIKLDLSKTFDKVEWSFLLETMEGLGFSEKWRNWINQCISTTSLSFKINGSPMSFLK 1687
            G   +KLD+SK +D+VEW FL   M+ +GF + W + +  CIS+ S +F +NG     L 
Sbjct: 572  GVCALKLDMSKAYDRVEWCFLERVMKKMGFCDGWIDRVMACISSVSFTFNVNGVVEGSLS 631

Query: 1686 PE*GIRQGDPLSPFLFIICMEVFSRLLSKVEKERQIHGVKISRSDTTMSHLLFADDSFIF 1507
            P  G+RQGDP+SP+LF++C + FS LLSK   E++IHG +I R    +SHL FADDS +F
Sbjct: 632  PSRGLRQGDPISPYLFLLCADAFSTLLSKAASEKKIHGAQICRGAPVVSHLFFADDSILF 691

Query: 1506 CRANIAETHHLKDILELFKNVSGQEIYFQKSGIFFSHNTHHRHQRIVKRILKIGKTITHE 1327
             +A++ E   + DI+  ++  SGQ++   K+ + FS +     +  +  +L + +    E
Sbjct: 692  TKASVQECSMVADIISKYERASGQQVNLSKTEVVFSRSVDRERRSAIVNVLGVKEVDRQE 751

Query: 1326 KYLGAPLILRRKSRIDFDEVLERVSQRMEGWRAKLLSQAGKLTLIKAVTSAIPSYMMSVF 1147
            KYLG P I+ R  ++ F  + ER+ ++++GW+ KLLS+ GK  LIK+V  AIP+YMMSVF
Sbjct: 752  KYLGLPTIIGRSKKVTFACIKERIWKKLQGWKEKLLSRPGKEVLIKSVAQAIPTYMMSVF 811

Query: 1146 QLPTSTCNKLNSLNASFFWRRKEDNTNKVHYISWNKICLPKSSGGWG 1006
             LP+   ++++SL A F+W    D   K+H+ SW+ +C PKS GG G
Sbjct: 812  SLPSGLIDEIHSLLARFWW-GSSDTNRKMHWHSWDTLCYPKSMGGLG 857



 Score =  108 bits (271), Expect(3) = 5e-95
 Identities = 80/262 (30%), Positives = 119/262 (45%), Gaps = 9/262 (3%)
 Frame = -3

Query: 1015 GLGIRRASHHNIALQAKLFWRIFKEPDKPRVVSLLKKYVRGNSILRVKCPRRG--ASKIW 842
            GLG R     N +L AK  WR+           L  +Y + + +L     RRG   S  W
Sbjct: 855  GLGFRDLHCFNQSLLAKQAWRLCTGDQTLLYRLLQARYFKSSELLEA---RRGYNPSFTW 911

Query: 841  QGILKARDAILPKLCWHIGTGNDIDIWLDPWIPTLPYNKPMGPMPPVGPFRC--VADLID 668
            + I  ++  +L  L W +G+G  I +W D WI  L     M P P         V DLID
Sbjct: 912  RSIWGSKSLLLEGLKWCVGSGERIRVWEDAWI--LGEGAHMVPTPQADSNLDLKVCDLID 969

Query: 667  PENRSWKRNVLDTIFLPATVKEILKVPLSRQEHNDSIRWLEETNGELTVKSVY---KYLS 497
                +W    +   F+    + +L +PLSR   +D   W    NG  +V+S Y   +   
Sbjct: 970  VARGAWNIESVQQTFVEEEWELVLSIPLSRFLPDDHRYWWPSRNGIFSVRSCYWLGRLGP 1029

Query: 496  ESTYTDQN--QN*QLWKSIWNLNTAEKVKLFFWKAIRNSLPTREKLVNRNIISSATCPRC 323
              T+  Q+  +  +LW+ +W L    K+  F W+A + SL  + +L +R+I   ATC  C
Sbjct: 1030 VRTWQLQHGERETELWRRVWQLQGPPKLSHFLWRACKGSLAVKGRLFSRHISVDATCSVC 1089

Query: 322  SNQVESTHHALFHCVMLRHMVW 257
             +  ES +HALF C   R  +W
Sbjct: 1090 GDPDESINHALFDCTFAR-AIW 1110



 Score = 33.5 bits (75), Expect(3) = 5e-95
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = -3

Query: 1972 ISPSQSVFVKGRQIFDNIVLAHEIVCTLKRK 1880
            ISP+QS FV  R I DN ++A EI   +KRK
Sbjct: 536  ISPNQSAFVPRRLITDNALVAFEIFHAMKRK 566


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1229

 Score =  240 bits (613), Expect(3) = 3e-94
 Identities = 117/285 (41%), Positives = 179/285 (62%)
 Frame = -1

Query: 1860 MTIKLDLSKTFDKVEWSFLLETMEGLGFSEKWRNWINQCISTTSLSFKINGSPMSFLKPE 1681
            M +K D+SK +D+VEW FL + ++  GF   W +W+ +C+++ S SF ING+P   + P 
Sbjct: 466  MAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPT 525

Query: 1680 *GIRQGDPLSPFLFIICMEVFSRLLSKVEKERQIHGVKISRSDTTMSHLLFADDSFIFCR 1501
             G+RQGDPLSP LFI+C EV S L ++ ++ RQ+ GV++S +   ++HLLFADD+  F +
Sbjct: 526  RGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSK 585

Query: 1500 ANIAETHHLKDILELFKNVSGQEIYFQKSGIFFSHNTHHRHQRIVKRILKIGKTITHEKY 1321
            ++    + L +IL  +   SGQ I F KS + FS  T    +  VKRILKI K     KY
Sbjct: 586  SDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKY 645

Query: 1320 LGAPLILRRKSRIDFDEVLERVSQRMEGWRAKLLSQAGKLTLIKAVTSAIPSYMMSVFQL 1141
            LG P    R+ R  F  +++++ Q+   W ++ LSQAGK  ++KAV +++P Y MS F+L
Sbjct: 646  LGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKL 705

Query: 1140 PTSTCNKLNSLNASFFWRRKEDNTNKVHYISWNKICLPKSSGGWG 1006
            P++ C K+ SL   F+W  K D   K  +++W+K+  PK++GG G
Sbjct: 706  PSALCRKIQSLLTRFWWDTKPD-VRKTSWVAWSKLTNPKNAGGLG 749



 Score =  120 bits (302), Expect(3) = 3e-94
 Identities = 78/245 (31%), Positives = 109/245 (44%)
 Frame = -3

Query: 1015 GLGIRRASHHNIALQAKLFWRIFKEPDKPRVVSLLKKYVRGNSILRVKCPRRGASKIWQG 836
            GLG R     N +L AKL WR+   P+      LL KY   +S +  K P +  S  W+ 
Sbjct: 747  GLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQ-PSHGWRS 805

Query: 835  ILKARDAILPKLCWHIGTGNDIDIWLDPWIPTLPYNKPMGPMPPVGPFRCVADLIDPENR 656
            I+  R+ +   L W I  G  + IW DPW+       P+GP         V+ LI+    
Sbjct: 806  IIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGPALREHQDLRVSALINQNTL 865

Query: 655  SWKRNVLDTIFLPATVKEILKVPLSRQEHNDSIRWLEETNGELTVKSVYKYLSESTYTDQ 476
             W  N +  + LP     I ++P       D + WL   +G+ T +S Y   S ++    
Sbjct: 866  QWDWNKI-AVILPNYENLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGYGIASVASIPIP 924

Query: 475  NQN*QLWKSIWNLNTAEKVKLFFWKAIRNSLPTREKLVNRNIISSATCPRCSNQVESTHH 296
                    ++W L T  K+K   WKA   +LP   +LV R+I  SA C RC    EST H
Sbjct: 925  QTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAACHRC-GAPESTTH 983

Query: 295  ALFHC 281
              FHC
Sbjct: 984  LFFHC 988



 Score = 34.3 bits (77), Expect(3) = 3e-94
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -3

Query: 1972 ISPSQSVFVKGRQIFDNIVLAHEIVCTLK---RKKRC 1871
            IS +QS FV GR I DN+++ HE++  L+    KK C
Sbjct: 428  ISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHC 464


>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score =  250 bits (638), Expect(2) = 6e-93
 Identities = 124/306 (40%), Positives = 189/306 (61%)
 Frame = -1

Query: 1923 TLFSLMRLFVL*KEKKGALGCMTIKLDLSKTFDKVEWSFLLETMEGLGFSEKWRNWINQC 1744
            +L +L     + K      G M +KLD+SK +D+VEW FL + +  +GF  +W N +  C
Sbjct: 557  SLIALEIFHTMKKRNNSRKGLMAMKLDMSKAYDRVEWGFLRKLLLTMGFDGRWVNLVMSC 616

Query: 1743 ISTTSLSFKINGSPMSFLKPE*GIRQGDPLSPFLFIICMEVFSRLLSKVEKERQIHGVKI 1564
            ++T S SF ING     + P  G+RQGDPLSPFLFI+  + FS+++ +    ++IHG K 
Sbjct: 617  VATVSYSFIINGRVCGSVTPSRGLRQGDPLSPFLFILVADAFSQMVKQKVVSKEIHGAKA 676

Query: 1563 SRSDTTMSHLLFADDSFIFCRANIAETHHLKDILELFKNVSGQEIYFQKSGIFFSHNTHH 1384
            SR+   +SHLLFADDS +F RA   E   + DIL  ++  SGQ+I ++KS + FS     
Sbjct: 677  SRNGPEISHLLFADDSLLFTRATRQECLTIVDILNKYEAASGQKINYEKSEVSFSRGVSC 736

Query: 1383 RHQRIVKRILKIGKTITHEKYLGAPLILRRKSRIDFDEVLERVSQRMEGWRAKLLSQAGK 1204
              +  +  +L + +   H+KYLG P +  R  ++ F E+L+R+ +++ GW+ KLLS+AGK
Sbjct: 737  EKKEELITLLHMRQVDRHQKYLGIPALCGRSKKVLFRELLDRMWKKLRGWKEKLLSRAGK 796

Query: 1203 LTLIKAVTSAIPSYMMSVFQLPTSTCNKLNSLNASFFWRRKEDNTNKVHYISWNKICLPK 1024
              LIKAV  A+P+Y+M V++LP +   +++S  A F+W  K D   K+H++SW K+C PK
Sbjct: 797  EVLIKAVIQALPTYLMGVYKLPVAVIQEIHSAMARFWWGGKGDE-RKMHWLSWEKMCKPK 855

Query: 1023 SSGGWG 1006
              GG G
Sbjct: 856  CMGGMG 861



 Score =  119 bits (299), Expect(2) = 6e-93
 Identities = 79/255 (30%), Positives = 119/255 (46%), Gaps = 4/255 (1%)
 Frame = -3

Query: 1027 KIKWGLGIRRASHHNIALQAKLFWRIF--KEPDKPRVVSLLKKYVRGNSILRVKCPRRGA 854
            K   G+G +  +  N AL  K  WR+   KE    RV+S  K Y  G+    V+  R G 
Sbjct: 855  KCMGGMGFKDLAVFNDALLGKQVWRLLHNKESLLSRVMSA-KYYPHGD----VRYARLGY 909

Query: 853  SKI--WQGILKARDAILPKLCWHIGTGNDIDIWLDPWIPTLPYNKPMGPMPPVGPFRCVA 680
            S    W+ I  A+  +L  L W +G G  IDIW  PW+              V     V 
Sbjct: 910  SHSYSWRSIWGAKSLVLEGLIWRVGDGTKIDIWSAPWVGD--EEGRFIKSARVEGLEVVG 967

Query: 679  DLIDPENRSWKRNVLDTIFLPATVKEILKVPLSRQEHNDSIRWLEETNGELTVKSVYKYL 500
            DL+D E + W   +++  F     + IL +PLS +   D + W    +G  +VK+ Y   
Sbjct: 968  DLMDVERKEWNVELIERHFNERDQQCILAIPLSTRCLQDELTWAYSKDGTYSVKTAYMLG 1027

Query: 499  SESTYTDQNQN*QLWKSIWNLNTAEKVKLFFWKAIRNSLPTREKLVNRNIISSATCPRCS 320
                  D ++   +W  +W+LN + KV+ F W+A  +SLP R+ L  R++I  A CP C+
Sbjct: 1028 KGGNLDDFHR---VWNILWSLNVSPKVRHFLWRACTSSLPVRKVLQRRHLIDEAGCPCCA 1084

Query: 319  NQVESTHHALFHCVM 275
             + E+  H  + C M
Sbjct: 1085 REDETQFHLFYRCPM 1099


>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score =  239 bits (610), Expect(2) = 2e-90
 Identities = 117/287 (40%), Positives = 179/287 (62%)
 Frame = -1

Query: 1866 GCMTIKLDLSKTFDKVEWSFLLETMEGLGFSEKWRNWINQCISTTSLSFKINGSPMSFLK 1687
            G + +KLD+SK +D+VEW FL + +  +GF  +W N I  C+S+ S SF ING     + 
Sbjct: 573  GTIAMKLDMSKAYDRVEWGFLRKLLLTMGFDGRWVNLIMSCVSSVSYSFIINGGVCGSVT 632

Query: 1686 PE*GIRQGDPLSPFLFIICMEVFSRLLSKVEKERQIHGVKISRSDTTMSHLLFADDSFIF 1507
            P  G+R GDPLSP+LFI+  + FS+++ K  +E+Q+HG K SRS   +SHL FAD S +F
Sbjct: 633  PARGLRHGDPLSPYLFILIADAFSKMIQKKVQEKQLHGAKASRSGPVISHLFFADVSLLF 692

Query: 1506 CRANIAETHHLKDILELFKNVSGQEIYFQKSGIFFSHNTHHRHQRIVKRILKIGKTITHE 1327
             RA+  E   + +IL L++  SGQ+I + KS + FS       +  +  IL++ +   H 
Sbjct: 693  TRASRQECAIIVEILNLYEQASGQKINYDKSEVSFSKGVSIAQKEELSNILQMKQVERHM 752

Query: 1326 KYLGAPLILRRKSRIDFDEVLERVSQRMEGWRAKLLSQAGKLTLIKAVTSAIPSYMMSVF 1147
            KYLG P I  R     FD +++R+ ++++GW+ KLLS+AGK  L+K+V  AIP+Y+M V+
Sbjct: 753  KYLGIPSITGRSRTAIFDSLMDRIWKKLQGWKEKLLSRAGKEILLKSVIQAIPTYLMGVY 812

Query: 1146 QLPTSTCNKLNSLNASFFWRRKEDNTNKVHYISWNKICLPKSSGGWG 1006
            +LP S   K++S  A F+W    D   ++H+ +W+ +C  K  GG G
Sbjct: 813  KLPCSIIQKIHSAMARFWW-GSSDTQRRIHWKNWDSLCTLKCFGGMG 858



 Score =  122 bits (305), Expect(2) = 2e-90
 Identities = 74/251 (29%), Positives = 115/251 (45%)
 Frame = -3

Query: 1015 GLGIRRASHHNIALQAKLFWRIFKEPDKPRVVSLLKKYVRGNSILRVKCPRRGASKIWQG 836
            G+G R     N AL  +  WR+ +EP       +  KY   +  L         S  W+ 
Sbjct: 856  GMGFRDLRVFNDALLGRQAWRLVREPHSLLARVMKAKYYSNHDFLDAPLGV-STSYSWRS 914

Query: 835  ILKARDAILPKLCWHIGTGNDIDIWLDPWIPTLPYNKPMGPMPPVGPFRCVADLIDPENR 656
            I  ++  +   + W IG G ++ IW DPW+  L            G    V++LID +  
Sbjct: 915  IWSSKALLKEGMVWRIGNGTNVRIWEDPWV--LDELGRFITSEKHGNLNMVSELIDFDRM 972

Query: 655  SWKRNVLDTIFLPATVKEILKVPLSRQEHNDSIRWLEETNGELTVKSVYKYLSESTYTDQ 476
             WK ++++T+F    +K IL +PLS     D + W    N   +VK+ Y  L +    D 
Sbjct: 973  EWKVSLIETVFNERDIKCILSIPLSSLPLKDELTWAFTKNAHYSVKTAYM-LGKGGNLDS 1031

Query: 475  NQN*QLWKSIWNLNTAEKVKLFFWKAIRNSLPTREKLVNRNIISSATCPRCSNQVESTHH 296
                Q W  IW++  + KVK F W+   N+LP R  L +R+++    CPR   + ES  H
Sbjct: 1032 FH--QAWIDIWSMEVSPKVKHFLWRLGTNTLPVRSLLKHRHMLDDDLCPRGCGEPESQFH 1089

Query: 295  ALFHCVMLRHM 263
            A+F C  +R +
Sbjct: 1090 AIFGCPFIRDL 1100