BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001479
         (848 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    65   3e-19
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    58   1e-15
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    62   2e-15
ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [S...    67   2e-15
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    59   5e-15

>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1715

 Score = 65.1 bits (157), Expect(2) = 3e-19
 Identities = 31/102 (30%), Positives = 59/102 (57%)
 Frame = +2

Query: 383 WNCRGMGTSMVVLTLKDLV*RENLDLIFLVETKADNNKVKTLQKTLSYPNSYVIEAMGRS 562
           WNC+G+G  + V  L+++     LD++FL+ETK  +N  + L   + + +  +I   G S
Sbjct: 368 WNCQGLGQPLTVRRLEEVQRVYFLDMLFLIETKQQDNYTRDLGVKMGFEDMCIISPRGLS 427

Query: 563 GGLAIFYKDNISLDIIGSS*NVVTGKLTNYIANYDWYYSCVW 688
           GGL +++K ++S+ +I     +V   L     N+++Y SC++
Sbjct: 428 GGLVVYWKKHLSIQVISHDVRLV--DLYVEYKNFNFYLSCIY 467



 Score = 56.6 bits (135), Expect(2) = 3e-19
 Identities = 22/57 (38%), Positives = 38/57 (66%)
 Frame = +3

Query: 672 ITLVYGHPIASRRRLIWDHFRTVKGCCNGPWLLWGDFNAILSTDEKLGGAKVNLKTM 842
           ++ +YGHPI S R  +W+  + V    +GPW++ GDFN IL+ +EK GG + ++ ++
Sbjct: 463 LSCIYGHPIPSERHHLWEKLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSL 519


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1750

 Score = 57.8 bits (138), Expect(2) = 1e-15
 Identities = 35/98 (35%), Positives = 51/98 (52%)
 Frame = +2

Query: 395 GMGTSMVVLTLKDLV*RENLDLIFLVETKADNNKVKTLQKTLSYPNSYVIEAMGRSGGLA 574
           G+G  +    L  L    N D++FLVET    +KV  L   L +PN       GRSGGLA
Sbjct: 391 GIGMPLTQSRLFRLFRMYNYDILFLVETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLA 450

Query: 575 IFYKDNISLDIIGSS*NVVTGKLTNYIANYDWYYSCVW 688
           + +K+N+SL +I     ++   +T    N  +Y SCV+
Sbjct: 451 LMWKNNVSLSLISQDERLIDSHVT--FNNKSFYLSCVY 486



 Score = 51.6 bits (122), Expect(2) = 1e-15
 Identities = 23/49 (46%), Positives = 28/49 (57%)
 Frame = +3

Query: 672 ITLVYGHPIASRRRLIWDHFRTVKGCCNGPWLLWGDFNAILSTDEKLGG 818
           ++ VYGHP  S R  +W     +    N  WLL GDFN ILS  EK+GG
Sbjct: 482 LSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGG 530


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
           (fragment)
          Length = 1365

 Score = 62.0 bits (149), Expect(2) = 2e-15
 Identities = 32/105 (30%), Positives = 61/105 (58%)
 Frame = +2

Query: 374 MLLWNCRGMGTSMVVLTLKDLV*RENLDLIFLVETKADNNKVKTLQKTLSYPNSYVIEAM 553
           ++ WNC+G+     +  LK++      D++FL+ETK   + V  +   L Y   + +E  
Sbjct: 2   VISWNCQGLRNPWTIRYLKEMKKDHFPDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPE 61

Query: 554 GRSGGLAIFYKDNISLDIIGSS*NVVTGKLTNYIANYDWYYSCVW 688
           GRSGGLAIF+K ++ ++ + +  N++  ++++   N  W+ SCV+
Sbjct: 62  GRSGGLAIFWKSHLEIEFLYADKNLMDLQVSS--RNKVWFISCVY 104



 Score = 46.6 bits (109), Expect(2) = 2e-15
 Identities = 22/51 (43%), Positives = 29/51 (56%)
 Frame = +3

Query: 672 ITLVYGHPIASRRRLIWDHFRTVKGCCNGPWLLWGDFNAILSTDEKLGGAK 824
           I+ VYG P+   R  +W+H  ++       W L GDFN I S DEKLGG +
Sbjct: 100 ISCVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSNDEKLGGPR 150


>ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [Sorghum bicolor]
           gi|241936261|gb|EES09406.1| hypothetical protein
           SORBIDRAFT_05g005061 [Sorghum bicolor]
          Length = 753

 Score = 66.6 bits (161), Expect(2) = 2e-15
 Identities = 30/77 (38%), Positives = 49/77 (63%)
 Frame = +2

Query: 377 LLWNCRGMGTSMVVLTLKDLV*RENLDLIFLVETKADNNKVKTLQKTLSYPNSYVIEAMG 556
           L WNCRG+G    V  L+DL       ++F++ET+    +V+ L+ TLS+ NS+ + + G
Sbjct: 4   LCWNCRGIGNPATVKELRDLAKDYAPSVMFIMETQISKYRVENLRYTLSFDNSFAVNSSG 63

Query: 557 RSGGLAIFYKDNISLDI 607
           RSGGL +F+ +++ L I
Sbjct: 64  RSGGLGLFWNNDVLLSI 80



 Score = 42.0 bits (97), Expect(2) = 2e-15
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +3

Query: 672 ITLVYGHPIASRRRLIWDHFRTVKGCCNGPWLLWGDFNAILSTDEKLG 815
           ++ +YG P  S R   WD  + ++   + PW+  GDFN IL  +E+LG
Sbjct: 102 MSFIYGEPNRSFRYRTWDIMKQMRSDTDLPWVCMGDFNEILRREEQLG 149


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 58.9 bits (141), Expect(2) = 5e-15
 Identities = 29/105 (27%), Positives = 62/105 (59%)
 Frame = +2

Query: 374 MLLWNCRGMGTSMVVLTLKDLV*RENLDLIFLVETKADNNKVKTLQKTLSYPNSYVIEAM 553
           +L WNC+G+G +  V  L+++      ++IFL ETK   N ++ +   L + + + +E +
Sbjct: 3   ILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVEPI 62

Query: 554 GRSGGLAIFYKDNISLDIIGSS*NVVTGKLTNYIANYDWYYSCVW 688
           G+SGGLA+ +KD++ + ++ S   ++   L     + ++Y +C++
Sbjct: 63  GKSGGLALMWKDSVQIKVLQSDKRLIDALL--IWQDKEFYLTCIY 105



 Score = 48.5 bits (114), Expect(2) = 5e-15
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +3

Query: 672 ITLVYGHPIASRRRLIWDHFRTVKGCCNGPWLLWGDFNAILSTDEKLGG 818
           +T +YG P+ + R  +W+    +    +GPW+L GDFN ++   EK+GG
Sbjct: 101 LTCIYGEPVQAERGELWERLTRLGLSRSGPWMLTGDFNELVDPSEKIGG 149