BLASTX nr result

ID: Coptis24_contig00001431 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001431
         (1162 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635449.1| PREDICTED: ethylene-responsive transcription...   280   5e-73
gb|ADC94856.1| DRE transcription factor 1 [Vitis pseudoreticulata]    276   5e-72
ref|XP_002285802.1| PREDICTED: ethylene-responsive transcription...   244   4e-62
gb|ADC94857.1| DRE transcription factor 2 [Vitis pseudoreticulata]    242   1e-61
emb|CBI23500.3| unnamed protein product [Vitis vinifera]              234   3e-59

>ref|XP_003635449.1| PREDICTED: ethylene-responsive transcription factor RAP2-4-like
           [Vitis vinifera]
          Length = 374

 Score =  280 bits (716), Expect = 5e-73
 Identities = 166/317 (52%), Positives = 199/317 (62%), Gaps = 24/317 (7%)
 Frame = +3

Query: 3   PPSFEPNL--DYCSTSTTPMFS---TYDDQLGLEQTGSIGLNHLTPSXXXXXXXXXXXXX 167
           P S +PN+  D+CSTSTT MFS   +  DQ+GLEQT SIGLNH+TP+             
Sbjct: 67  PDSTQPNMYPDFCSTSTTHMFSQGFSGYDQMGLEQTRSIGLNHITPAQILQIQAQIQFQQ 126

Query: 168 XX-------TAAASFHSQKLNQIQQQKTALNFLSPKAIPMKQVGISSNPTKLYRGVRQRH 326
                      A+S  +Q+L+Q QQQ   LNFL PKAIPMKQVG    P KLYRGVRQRH
Sbjct: 127 QQQQRMAAVATASSIQNQRLSQWQQQHN-LNFLGPKAIPMKQVGTPPKPAKLYRGVRQRH 185

Query: 327 WGKWVAEIRLPRNRTRLWLGTFETXXXXXXXXXXXXXXXRGEFARLNFPHLRHQGSL--- 497
           WGKWVAEIRLP+NRTRLWLGTF+T               RGEFARLNFP+LRHQGSL   
Sbjct: 186 WGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAFKLRGEFARLNFPNLRHQGSLVAG 245

Query: 498 --GDYKPLHSSVDAKLEAICQSL----KEGNSSKPXXXXXXXXXXXXXXQASVPNVMEVV 659
             GDYKPLHSSVDAKL+AICQ+L    K+GNS KP              ++S      V+
Sbjct: 246 EFGDYKPLHSSVDAKLQAICQNLAISQKQGNSGKP------GLVADAKIESSTHQAEMVL 299

Query: 660 VNSCNGEMGFLGSEDIKVE---NTTTPSQSDTDVVSLVSSPESDVSKFQEFTDMPWNDSD 830
            NS + E GFLG ED KVE   ++++PS SD       SSPESD+S F +FTD  WNDS+
Sbjct: 300 DNSSDPESGFLGLEDCKVEISSSSSSPSPSDESSAG-SSSPESDIS-FLDFTDSQWNDSE 357

Query: 831 NFSLHKYPSFDVDWEAI 881
             +L K+PS ++DW +I
Sbjct: 358 CLTLEKFPSVEIDWASI 374


>gb|ADC94856.1| DRE transcription factor 1 [Vitis pseudoreticulata]
          Length = 379

 Score =  276 bits (707), Expect = 5e-72
 Identities = 165/321 (51%), Positives = 198/321 (61%), Gaps = 28/321 (8%)
 Frame = +3

Query: 3    PPSFEPNL--DYCSTSTTPMFSTYD---DQLGLEQTGSIGLNHLTPSXXXXXXXXXXXXX 167
            P S +PN+   +CSTSTT MFS      DQ+GLEQTGSIGLNH+TP+             
Sbjct: 67   PDSTQPNMYPGFCSTSTTHMFSQGFLGYDQMGLEQTGSIGLNHITPAQILQIQAQIQFQQ 126

Query: 168  XX-------TAAASFHSQKLNQIQQQKT----ALNFLSPKAIPMKQVGISSNPTKLYRGV 314
                       A+S  +Q+L+Q QQQ+      LNFL PKAIPMKQVG    P KLYRGV
Sbjct: 127  QQQQRMAAVATASSIQNQRLSQWQQQQQQQQHTLNFLGPKAIPMKQVGTPPKPAKLYRGV 186

Query: 315  RQRHWGKWVAEIRLPRNRTRLWLGTFETXXXXXXXXXXXXXXXRGEFARLNFPHLRHQGS 494
            RQRHWGKWVAEIRLP+NRTRLWLGTF+T               RGEFARLNFP+LRHQGS
Sbjct: 187  RQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAFKLRGEFARLNFPNLRHQGS 246

Query: 495  L-----GDYKPLHSSVDAKLEAICQSL----KEGNSSKPXXXXXXXXXXXXXXQASVPNV 647
            L     GDYKPLHSSVDAKL+AICQ+L    K+GNS KP              ++S    
Sbjct: 247  LVAGEFGDYKPLHSSVDAKLQAICQNLAISQKQGNSGKP------GLVSDAKIESSTHQA 300

Query: 648  MEVVVNSCNGEMGFLGSEDIKVE---NTTTPSQSDTDVVSLVSSPESDVSKFQEFTDMPW 818
              V+ NS + E GFLG ED KVE   ++++PS SD       SSPESD+S   +FTD  W
Sbjct: 301  EMVLDNSSDPESGFLGLEDCKVEISSSSSSPSPSDESSAG-SSSPESDIS-LLDFTDSQW 358

Query: 819  NDSDNFSLHKYPSFDVDWEAI 881
            NDS+  +L K+PS ++DW +I
Sbjct: 359  NDSECLTLEKFPSVEIDWASI 379


>ref|XP_002285802.1| PREDICTED: ethylene-responsive transcription factor RAP2-4-like
           isoform 1 [Vitis vinifera]
          Length = 367

 Score =  244 bits (622), Expect = 4e-62
 Identities = 151/304 (49%), Positives = 185/304 (60%), Gaps = 17/304 (5%)
 Frame = +3

Query: 27  DYCSTSTTPM----FSTYDDQLGLEQTGSIGLNHLTPSXXXXXXXXXXXXXXXT------ 176
           D CSTSTT +    FS++D Q G E +G IGLNHLTPS                      
Sbjct: 69  DGCSTSTTHVISQGFSSHDLQ-GFEHSGPIGLNHLTPSQIHQIQAQIQLQQHHNHMPAVA 127

Query: 177 AAASFHSQKLNQIQQQKTALNFLSPKAIPMKQVGISSNPTKLYRGVRQRHWGKWVAEIRL 356
           AAASF++Q L Q QQ++ A NFLSPK IPMKQVG+   PTKLYRGVRQRHWGKWVAEIRL
Sbjct: 128 AAASFNTQNLPQWQQRQQAPNFLSPKPIPMKQVGVPPKPTKLYRGVRQRHWGKWVAEIRL 187

Query: 357 PRNRTRLWLGTFETXXXXXXXXXXXXXXXRGEFARLNFPHLRHQGS-----LGDYKPLHS 521
           P+NRTRLWLGTF+T               RG+FARLNFP+LRHQGS      GDYKPLHS
Sbjct: 188 PKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSHIGGEFGDYKPLHS 247

Query: 522 SVDAKLEAICQSLKE-GNSSKPXXXXXXXXXXXXXXQASVPNVMEVVVNSCNGEMGFLGS 698
           SVDAKL+AICQSL E     KP              +A  P+  + V  S +  +   GS
Sbjct: 248 SVDAKLQAICQSLAETQKQGKP------TQGKKSRSRAVAPSASQPVTVSESSTLSEQGS 301

Query: 699 EDIKVENTTTPSQSDTDVVSLVSSPESDVSKFQEFTDMPWNDS-DNFSLHKYPSFDVDWE 875
           ED KVE T++   +++D  S  SSP SD++   +  + P+  + +NF+L KYPS ++DW 
Sbjct: 302 EDCKVEPTSSSMFTESD-GSGGSSPLSDLTFPDDCEEAPFYGAWENFNLQKYPSNEIDWA 360

Query: 876 AILS 887
           AI S
Sbjct: 361 AISS 364


>gb|ADC94857.1| DRE transcription factor 2 [Vitis pseudoreticulata]
          Length = 248

 Score =  242 bits (617), Expect = 1e-61
 Identities = 137/250 (54%), Positives = 164/250 (65%), Gaps = 16/250 (6%)
 Frame = +3

Query: 180 AASFHSQKLNQIQQQKT----ALNFLSPKAIPMKQVGISSNPTKLYRGVRQRHWGKWVAE 347
           A+S  +Q+L+Q QQQ+      LNFL PKAIPMKQVG    P KLYRGVRQRHWGKWVAE
Sbjct: 7   ASSIQNQRLSQWQQQQQQQQHTLNFLGPKAIPMKQVGTPPKPAKLYRGVRQRHWGKWVAE 66

Query: 348 IRLPRNRTRLWLGTFETXXXXXXXXXXXXXXXRGEFARLNFPHLRHQGSL-----GDYKP 512
           IRLP+NRTRLWLGTF+T               RGEFARLNFP+LRHQGSL     GDYKP
Sbjct: 67  IRLPKNRTRLWLGTFDTAEEAALAYDKAAFKLRGEFARLNFPNLRHQGSLVAGEFGDYKP 126

Query: 513 LHSSVDAKLEAICQSL----KEGNSSKPXXXXXXXXXXXXXXQASVPNVMEVVVNSCNGE 680
           LHSSVDAKL+AICQ+L    K+GNS KP              ++S      V+ NS + E
Sbjct: 127 LHSSVDAKLQAICQNLAISQKQGNSGKP------GLVSDAKIESSTHQAEMVLDNSSDPE 180

Query: 681 MGFLGSEDIKVE---NTTTPSQSDTDVVSLVSSPESDVSKFQEFTDMPWNDSDNFSLHKY 851
            GFLG ED KVE   ++++PS SD       SSPESD+S F +FTD  WNDS+  +L K+
Sbjct: 181 SGFLGLEDCKVEISSSSSSPSPSDESSAG-SSSPESDIS-FLDFTDSQWNDSECLTLEKF 238

Query: 852 PSFDVDWEAI 881
           PS ++DW +I
Sbjct: 239 PSVEIDWASI 248


>emb|CBI23500.3| unnamed protein product [Vitis vinifera]
          Length = 270

 Score =  234 bits (597), Expect = 3e-59
 Identities = 140/284 (49%), Positives = 168/284 (59%), Gaps = 9/284 (3%)
 Frame = +3

Query: 57  FSTYDDQLGLEQTGSIGLNHLTPSXXXXXXXXXXXXXXXTAAASFHSQKLNQIQQQKTAL 236
           FS YD Q+GLEQT SIGLNH+TP+                        +++Q QQQ   L
Sbjct: 32  FSGYD-QMGLEQTRSIGLNHITPAQILQI-----------------QAQIHQWQQQHN-L 72

Query: 237 NFLSPKAIPMKQVGISSNPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFETXXXXXX 416
           NFL PKAIPMKQVG    P KLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTF+T      
Sbjct: 73  NFLGPKAIPMKQVGTPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAL 132

Query: 417 XXXXXXXXXRGEFARLNFPHLRHQGSL-----GDYKPLHSSVDAKLEAICQSL----KEG 569
                    RGEFARLNFP+LRHQGSL     GDYKPLHSSVDAKL+AICQ+L    K+G
Sbjct: 133 AYDKAAFKLRGEFARLNFPNLRHQGSLVAGEFGDYKPLHSSVDAKLQAICQNLAISQKQG 192

Query: 570 NSSKPXXXXXXXXXXXXXXQASVPNVMEVVVNSCNGEMGFLGSEDIKVENTTTPSQSDTD 749
           NS KP                    V +  + S   +   + S      ++++PS SD  
Sbjct: 193 NSGKPGL------------------VADAKIESSTHQAEMISS------SSSSPSPSDES 228

Query: 750 VVSLVSSPESDVSKFQEFTDMPWNDSDNFSLHKYPSFDVDWEAI 881
                SSPESD+S F +FTD  WNDS+  +L K+PS ++DW +I
Sbjct: 229 SAG-SSSPESDIS-FLDFTDSQWNDSECLTLEKFPSVEIDWASI 270


Top