BLASTX nr result
ID: Coptis24_contig00001273
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00001273
(1432 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002271564.2| PREDICTED: ribosome biogenesis GTPase A-like... 484 e-134
gb|ABK94828.1| unknown [Populus trichocarpa] 476 e-132
ref|XP_002307583.1| predicted protein [Populus trichocarpa] gi|2... 475 e-131
ref|NP_001242175.1| uncharacterized protein LOC100784201 [Glycin... 471 e-130
ref|XP_004150129.1| PREDICTED: ribosome biogenesis GTPase A-like... 470 e-130
>ref|XP_002271564.2| PREDICTED: ribosome biogenesis GTPase A-like [Vitis vinifera]
gi|296086696|emb|CBI32331.3| unnamed protein product
[Vitis vinifera]
Length = 367
Score = 484 bits (1247), Expect = e-134
Identities = 235/324 (72%), Positives = 274/324 (84%), Gaps = 6/324 (1%)
Frame = +2
Query: 56 KILGGKTPG------LSSKQTITTYQEEQNDWLDLDAEFYRWTKSLRPVQWYPGHIAKTX 217
+I+GGK+ G +SS +T EE W +LDA+ Y WTK LRP+QWYPGHIAKT
Sbjct: 44 QIVGGKSHGQYVNGGVSSNRTFEDISEESY-WTNLDADLYHWTKKLRPIQWYPGHIAKTE 102
Query: 218 XXXXXXXXXMDVVIDVRDARIPLATSHPEMDSWIGNKKRMLVLNREDMISTAERNAWATY 397
MDVVI+V+DARIPL+TSHP+M+SW+GN+KR+LVLNREDMIST +RNAWATY
Sbjct: 103 KELKEQLKLMDVVIEVQDARIPLSTSHPQMESWLGNRKRILVLNREDMISTEDRNAWATY 162
Query: 398 FSKQGTKVVFSNGQLGMGALKLGRLAKSLAVGINAKRRAKGLLPRAVRAGIVGYPNVGKS 577
++ QG KVVFSNGQLGMG++KL RLAK+LA G+N KRRAKGLLPR VRAGIVGYPNVGKS
Sbjct: 163 YAMQGIKVVFSNGQLGMGSMKLSRLAKTLASGVNVKRRAKGLLPRPVRAGIVGYPNVGKS 222
Query: 578 SLINRLLKRRMCPAAPRPGVTRVLKWIRFGKDLELLDSPGILPMRISDQGAAMKLAICDD 757
SLINRLLKRRMCPAAPRPGVTR LKW++FGKDLELLDSPGI+PMRISDQ AA+KLAICDD
Sbjct: 223 SLINRLLKRRMCPAAPRPGVTRQLKWVQFGKDLELLDSPGIIPMRISDQSAAIKLAICDD 282
Query: 758 IGERSYDVADVAAILVQMLTKLPTVGSKALYNRYKIHVEDHCGKTFLEKLSMELFNGDVN 937
IGERSYDVADVAAILVQMLT++P VG KALYNRYKI + CG F++KL+++LFNGD +
Sbjct: 283 IGERSYDVADVAAILVQMLTRIPAVGPKALYNRYKIDTDGLCGNIFVQKLALQLFNGDTH 342
Query: 938 QAAFRVLTDFRKGRFGWVGLEIPP 1009
QAAFR+LTDFRKG+FGW+ LE PP
Sbjct: 343 QAAFRILTDFRKGKFGWIALERPP 366
>gb|ABK94828.1| unknown [Populus trichocarpa]
Length = 367
Score = 476 bits (1224), Expect = e-132
Identities = 231/321 (71%), Positives = 266/321 (82%), Gaps = 2/321 (0%)
Frame = +2
Query: 56 KILGGK-TPGLS-SKQTITTYQEEQNDWLDLDAEFYRWTKSLRPVQWYPGHIAKTXXXXX 229
+I+GGK TP S + E+ DW D + + Y WTK LRPVQWYPGHIAKT
Sbjct: 47 QIVGGKSTPSWQGSGNDVCGGGGEETDWYDFETDLYHWTKPLRPVQWYPGHIAKTEKELK 106
Query: 230 XXXXXMDVVIDVRDARIPLATSHPEMDSWIGNKKRMLVLNREDMISTAERNAWATYFSKQ 409
MDVVI+VRDARIPL+T+HP+MD+W+GN+KR+LVLNREDMIS A+RNAWATYF++Q
Sbjct: 107 EQLKLMDVVIEVRDARIPLSTTHPQMDAWLGNRKRILVLNREDMISKADRNAWATYFARQ 166
Query: 410 GTKVVFSNGQLGMGALKLGRLAKSLAVGINAKRRAKGLLPRAVRAGIVGYPNVGKSSLIN 589
G KVV SNGQLGMG +KL R AKSLA +N KRR KGLLPR VRAGIVGYPNVGKSSLIN
Sbjct: 167 GIKVVLSNGQLGMGTMKLSRFAKSLAASVNVKRREKGLLPRPVRAGIVGYPNVGKSSLIN 226
Query: 590 RLLKRRMCPAAPRPGVTRVLKWIRFGKDLELLDSPGILPMRISDQGAAMKLAICDDIGER 769
RLLKRRMCPAAPRPGVTR L+W+RFG DLELLDSPGI+PMRISDQ AA+KLAICDDIGER
Sbjct: 227 RLLKRRMCPAAPRPGVTRELRWVRFGNDLELLDSPGIIPMRISDQSAAIKLAICDDIGER 286
Query: 770 SYDVADVAAILVQMLTKLPTVGSKALYNRYKIHVEDHCGKTFLEKLSMELFNGDVNQAAF 949
SYDV DVAAILVQ+LTKLPTVG+KAL NRYK+ +D CGK F++KLS+ LFNGD +QAAF
Sbjct: 287 SYDVTDVAAILVQILTKLPTVGAKALNNRYKMDADDFCGKIFVQKLSVHLFNGDTHQAAF 346
Query: 950 RVLTDFRKGRFGWVGLEIPPK 1012
R+L+DFRKG+FGW LE PP+
Sbjct: 347 RILSDFRKGKFGWAALERPPR 367
>ref|XP_002307583.1| predicted protein [Populus trichocarpa] gi|222857032|gb|EEE94579.1|
predicted protein [Populus trichocarpa]
Length = 387
Score = 475 bits (1222), Expect = e-131
Identities = 231/320 (72%), Positives = 265/320 (82%), Gaps = 2/320 (0%)
Frame = +2
Query: 56 KILGGK-TPGLS-SKQTITTYQEEQNDWLDLDAEFYRWTKSLRPVQWYPGHIAKTXXXXX 229
+I+GGK TP S + E+ DW D + + Y WTK LRPVQWYPGHIAKT
Sbjct: 47 QIVGGKSTPSWQGSGNDVCGGGGEETDWYDFETDLYHWTKPLRPVQWYPGHIAKTEKELK 106
Query: 230 XXXXXMDVVIDVRDARIPLATSHPEMDSWIGNKKRMLVLNREDMISTAERNAWATYFSKQ 409
MDVVI+VRDARIPL+T+HP+MD+W+GN+KR+LVLNREDMIS A+RNAWATYF++Q
Sbjct: 107 EQLKLMDVVIEVRDARIPLSTTHPQMDAWLGNRKRILVLNREDMISKADRNAWATYFARQ 166
Query: 410 GTKVVFSNGQLGMGALKLGRLAKSLAVGINAKRRAKGLLPRAVRAGIVGYPNVGKSSLIN 589
G KVV SNGQLGMG +KL R AKSLA +N KRR KGLLPR VRAGIVGYPNVGKSSLIN
Sbjct: 167 GIKVVLSNGQLGMGTMKLSRFAKSLAASVNVKRREKGLLPRPVRAGIVGYPNVGKSSLIN 226
Query: 590 RLLKRRMCPAAPRPGVTRVLKWIRFGKDLELLDSPGILPMRISDQGAAMKLAICDDIGER 769
RLLKRRMCPAAPRPGVTR L+W+RFG DLELLDSPGI+PMRISDQ AA+KLAICDDIGER
Sbjct: 227 RLLKRRMCPAAPRPGVTRELRWVRFGNDLELLDSPGIIPMRISDQSAAIKLAICDDIGER 286
Query: 770 SYDVADVAAILVQMLTKLPTVGSKALYNRYKIHVEDHCGKTFLEKLSMELFNGDVNQAAF 949
SYDV DVAAILVQ+LTKLPTVG+KAL NRYK+ +D CGK F++KLS+ LFNGD +QAAF
Sbjct: 287 SYDVTDVAAILVQILTKLPTVGAKALNNRYKMDADDFCGKIFVQKLSVHLFNGDTHQAAF 346
Query: 950 RVLTDFRKGRFGWVGLEIPP 1009
R+L+DFRKG+FGW LE PP
Sbjct: 347 RILSDFRKGKFGWAALERPP 366
>ref|NP_001242175.1| uncharacterized protein LOC100784201 [Glycine max]
gi|255634965|gb|ACU17841.1| unknown [Glycine max]
Length = 391
Score = 471 bits (1212), Expect = e-130
Identities = 227/300 (75%), Positives = 257/300 (85%)
Frame = +2
Query: 113 QEEQNDWLDLDAEFYRWTKSLRPVQWYPGHIAKTXXXXXXXXXXMDVVIDVRDARIPLAT 292
Q E + W +LD + Y WTK+LRPVQW+PGHIAK MDVVI+VRD RIP++T
Sbjct: 67 QGESDHWSELDTDLYHWTKALRPVQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPMST 126
Query: 293 SHPEMDSWIGNKKRMLVLNREDMISTAERNAWATYFSKQGTKVVFSNGQLGMGALKLGRL 472
SHP+MD W+GN+KR+LVLNREDMISTA+RNAWA YF++ GTKVVFSNGQLGMG +KLGRL
Sbjct: 127 SHPQMDPWLGNRKRILVLNREDMISTADRNAWADYFTRNGTKVVFSNGQLGMGTMKLGRL 186
Query: 473 AKSLAVGINAKRRAKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 652
AK LA +N KRR+KGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR L+
Sbjct: 187 AKELAADVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELR 246
Query: 653 WIRFGKDLELLDSPGILPMRISDQGAAMKLAICDDIGERSYDVADVAAILVQMLTKLPTV 832
W+RFGKDLELLDSPGILPMRISDQ AA+KLAICDDIGERSYDVADVAAILVQML+KLPTV
Sbjct: 247 WVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVADVAAILVQMLSKLPTV 306
Query: 833 GSKALYNRYKIHVEDHCGKTFLEKLSMELFNGDVNQAAFRVLTDFRKGRFGWVGLEIPPK 1012
G AL RYKI V+ G+ F+EKL++ +FNGDV+QAAFRVL DFRKG+FGW LE PPK
Sbjct: 307 GRDALCKRYKIDVDCRDGRIFIEKLAVRVFNGDVHQAAFRVLADFRKGKFGWTALERPPK 366
>ref|XP_004150129.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]
gi|449507918|ref|XP_004163166.1| PREDICTED: ribosome
biogenesis GTPase A-like [Cucumis sativus]
Length = 370
Score = 470 bits (1209), Expect = e-130
Identities = 228/337 (67%), Positives = 276/337 (81%), Gaps = 3/337 (0%)
Frame = +2
Query: 11 TLSPKALPQQQRFPNKILGGKTP---GLSSKQTITTYQEEQNDWLDLDAEFYRWTKSLRP 181
+L+P A +I+GGKT G S+ + + + + DW+D +A+ Y WT +LRP
Sbjct: 33 SLAPSASVSSPHPTIQIVGGKTSNFLGDSTPKGASNNELLEGDWVDFEADLYYWTNALRP 92
Query: 182 VQWYPGHIAKTXXXXXXXXXXMDVVIDVRDARIPLATSHPEMDSWIGNKKRMLVLNREDM 361
VQWYPGHIAKT MDVVI+VRDARIP++TSHP+MD+W+GN++R+LVLNREDM
Sbjct: 93 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPMSTSHPQMDAWLGNRRRILVLNREDM 152
Query: 362 ISTAERNAWATYFSKQGTKVVFSNGQLGMGALKLGRLAKSLAVGINAKRRAKGLLPRAVR 541
IS+A+RNAWATYF++QG KVVFSNGQ GMG +KLGRLAK+LA +N KRRAKGLLPRAVR
Sbjct: 153 ISSADRNAWATYFTRQGIKVVFSNGQHGMGTMKLGRLAKTLAADVNVKRRAKGLLPRAVR 212
Query: 542 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWIRFGKDLELLDSPGILPMRISD 721
AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR LKW+RFG DLELLDSPGI+PMRISD
Sbjct: 213 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELKWVRFGNDLELLDSPGIIPMRISD 272
Query: 722 QGAAMKLAICDDIGERSYDVADVAAILVQMLTKLPTVGSKALYNRYKIHVEDHCGKTFLE 901
Q AA+KLAICDDIGERSY+ ADVAAILVQ+LTKLP+VG + L RYK+ CG+ F++
Sbjct: 273 QTAAIKLAICDDIGERSYNAADVAAILVQILTKLPSVGIETLQKRYKVDAGGQCGQIFVQ 332
Query: 902 KLSMELFNGDVNQAAFRVLTDFRKGRFGWVGLEIPPK 1012
KL+++LFNGD +QAAFR+L+DFRKG+FGW LE PP+
Sbjct: 333 KLALQLFNGDNHQAAFRILSDFRKGKFGWTALERPPR 369