BLASTX nr result
ID: Coptis24_contig00001268
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00001268
(3256 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 196 4e-80
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 196 4e-80
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 198 1e-78
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 228 2e-71
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 208 3e-68
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 196 bits (499), Expect(4) = 4e-80
Identities = 98/223 (43%), Positives = 143/223 (64%)
Frame = -3
Query: 1028 EYRSIACCNMDYKTISKVLANRMKRVIESITYENQRAFIFGRHIQDNLLLTHELLRKYHR 849
E+R I+C N YK ISK+L +R++ ++ ++ +Q AF+ GR + +N+LL E++ Y+R
Sbjct: 382 EFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNR 441
Query: 848 KWISPRCTLKIDLQKAYDNVQWQAILDILTKMWFPQRYITWIQSCMTTPSYSIIINGQLV 669
ISPR LK+DL+KA+D+V+W+ + L + P+RYI WI C+TTPS++I +NG
Sbjct: 442 LNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGATG 501
Query: 668 GFFQGKKGIRQGDPLSPSLFILLMEVLAAKMERARQIKLFNLHPKCFNPIITHLCFADDL 489
GFF+ KG+RQGDPLSP LF+L MEV + + + HPK + I+HL FADD+
Sbjct: 502 GFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDV 561
Query: 488 MIFCKAELSSTQAIISILESFGEVSGLNMNHNKSSIMVAGLSL 360
MIF SS I L+ F + SGL +N +KS + AGL L
Sbjct: 562 MIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDL 604
Score = 73.2 bits (178), Expect(4) = 4e-80
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Frame = -2
Query: 1464 RKGNQEIWGLIKANGDRTESEEDVREEIEGYYKELLGS-QNPKPCNADTLNEF-TFKSTQ 1291
RK I L+ +NG +S++ + + YY+ LLGS ++P + +N T++ +Q
Sbjct: 238 RKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTYRCSQ 297
Query: 1290 NDQQLSNLXXXXXXXXXXTLF-SIGDDKSAGPDGYGSYFSKKYWVIIKWDFLKAVKNFFR 1114
+ Q S L F S+ +K++GPDGY F + W II + L A+ FF
Sbjct: 298 D--QCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFD 355
Query: 1113 SARMLKIVNARNITLVPKVENPNTVEEYRV*INCM 1009
S ++LK NA + L+PK N T+ E+R I+C+
Sbjct: 356 SGQLLKQWNATTLVLIPKTSNACTISEFRP-ISCL 389
Score = 63.2 bits (152), Expect(4) = 4e-80
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = -2
Query: 327 PTKYLGMPLITTRLEISDCQPLIEAMTRRVKSWKAKVLSYAGRLQLIKSVLISIQLGYMD 148
P +YLG+PL+ +L I+D PL+E ++ R++SW +K LS+AGR QLI SV+ + +M
Sbjct: 621 PIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMS 680
Query: 147 TELSQK 130
T L K
Sbjct: 681 TFLLPK 686
Score = 37.4 bits (85), Expect(4) = 4e-80
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -1
Query: 1669 KIEEKREKLESVQRRLQLQPSNVRLAQE-ELSTQVTTLKRYELDILKQKIKTKWALYGDD 1493
+ +E E L + Q PS A E E + L E Q+ + W GD
Sbjct: 167 RTKEAHELLITCQNLTLANPSVSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDS 226
Query: 1492 CTNYFHKMVKERKSRN 1445
T+YFH+MV RKS N
Sbjct: 227 NTHYFHRMVDSRKSFN 242
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 196 bits (499), Expect(4) = 4e-80
Identities = 98/223 (43%), Positives = 143/223 (64%)
Frame = -3
Query: 1028 EYRSIACCNMDYKTISKVLANRMKRVIESITYENQRAFIFGRHIQDNLLLTHELLRKYHR 849
E+R I+C N YK ISK+L +R++ ++ ++ +Q AF+ GR + +N+LL E++ Y+R
Sbjct: 382 EFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNR 441
Query: 848 KWISPRCTLKIDLQKAYDNVQWQAILDILTKMWFPQRYITWIQSCMTTPSYSIIINGQLV 669
ISPR LK+DL+KA+D+V+W+ + L + P+RYI WI C+TTPS++I +NG
Sbjct: 442 LNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGATG 501
Query: 668 GFFQGKKGIRQGDPLSPSLFILLMEVLAAKMERARQIKLFNLHPKCFNPIITHLCFADDL 489
GFF+ KG+RQGDPLSP LF+L MEV + + + HPK + I+HL FADD+
Sbjct: 502 GFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDV 561
Query: 488 MIFCKAELSSTQAIISILESFGEVSGLNMNHNKSSIMVAGLSL 360
MIF SS I L+ F + SGL +N +KS + AGL L
Sbjct: 562 MIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDL 604
Score = 73.2 bits (178), Expect(4) = 4e-80
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Frame = -2
Query: 1464 RKGNQEIWGLIKANGDRTESEEDVREEIEGYYKELLGS-QNPKPCNADTLNEF-TFKSTQ 1291
RK I L+ +NG +S++ + + YY+ LLGS ++P + +N T++ +Q
Sbjct: 238 RKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTYRCSQ 297
Query: 1290 NDQQLSNLXXXXXXXXXXTLF-SIGDDKSAGPDGYGSYFSKKYWVIIKWDFLKAVKNFFR 1114
+ Q S L F S+ +K++GPDGY F + W II + L A+ FF
Sbjct: 298 D--QCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFD 355
Query: 1113 SARMLKIVNARNITLVPKVENPNTVEEYRV*INCM 1009
S ++LK NA + L+PK N T+ E+R I+C+
Sbjct: 356 SGQLLKQWNATTLVLIPKTSNACTISEFRP-ISCL 389
Score = 63.2 bits (152), Expect(4) = 4e-80
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = -2
Query: 327 PTKYLGMPLITTRLEISDCQPLIEAMTRRVKSWKAKVLSYAGRLQLIKSVLISIQLGYMD 148
P +YLG+PL+ +L I+D PL+E ++ R++SW +K LS+AGR QLI SV+ + +M
Sbjct: 621 PIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMS 680
Query: 147 TELSQK 130
T L K
Sbjct: 681 TFLLPK 686
Score = 37.4 bits (85), Expect(4) = 4e-80
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -1
Query: 1669 KIEEKREKLESVQRRLQLQPSNVRLAQE-ELSTQVTTLKRYELDILKQKIKTKWALYGDD 1493
+ +E E L + Q PS A E E + L E Q+ + W GD
Sbjct: 167 RTKEAHELLITCQNLTLANPSVSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDS 226
Query: 1492 CTNYFHKMVKERKSRN 1445
T+YFH+MV RKS N
Sbjct: 227 NTHYFHRMVDSRKSFN 242
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 198 bits (503), Expect(4) = 1e-78
Identities = 100/221 (45%), Positives = 145/221 (65%)
Frame = -3
Query: 1028 EYRSIACCNMDYKTISKVLANRMKRVIESITYENQRAFIFGRHIQDNLLLTHELLRKYHR 849
E+R I+CCN YK ISK+LA R++ ++ +Q AF+ GR + +N+LL EL++ + +
Sbjct: 521 EFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQ 580
Query: 848 KWISPRCTLKIDLQKAYDNVQWQAILDILTKMWFPQRYITWIQSCMTTPSYSIIINGQLV 669
IS R LK+DL+KA+D+V W I++ L P R++ WI+ C+T+ S+SI ++G L
Sbjct: 581 ANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLC 640
Query: 668 GFFQGKKGIRQGDPLSPSLFILLMEVLAAKMERARQIKLFNLHPKCFNPIITHLCFADDL 489
G+F+G KG+RQGDPLSPSLF++ ME+L+ +E HPK I+ L FADDL
Sbjct: 641 GYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDL 700
Query: 488 MIFCKAELSSTQAIISILESFGEVSGLNMNHNKSSIMVAGL 366
MIF + SS + I S+LESF +SGL MN KS++ AGL
Sbjct: 701 MIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGL 741
Score = 77.0 bits (188), Expect(4) = 1e-78
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Frame = -2
Query: 1464 RKGNQEIWGLIKANGDRTESEEDVREEIEGYYKELLGSQNP--KPCNADTLNEFT-FKST 1294
R+ EI L+ G R E+ ++++ ++KEL GS + +N T FK
Sbjct: 376 RRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSSSHLISAEGISQINSLTRFKCD 435
Query: 1293 QNDQQLSNLXXXXXXXXXXTLFSIGDDKSAGPDGYGSYFSKKYWVIIKWDFLKAVKNFFR 1114
+N +QL F++ +KS GPDGY S F KK W I+ + AV+ FFR
Sbjct: 436 ENTRQLLEAEVSEADIKSE-FFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFR 494
Query: 1113 SARMLKIVNARNITLVPKVENPNTVEEYR 1027
S R+L N+ +T+VPK N + + E+R
Sbjct: 495 SGRLLGQWNSTAVTMVPKKPNADRITEFR 523
Score = 54.3 bits (129), Expect(4) = 1e-78
Identities = 26/53 (49%), Positives = 34/53 (64%)
Frame = -2
Query: 327 PTKYLGMPLITTRLEISDCQPLIEAMTRRVKSWKAKVLSYAGRLQLIKSVLIS 169
P +YLG+PL+ +L SD LI+ + R W K LS+AGRLQLI SV+ S
Sbjct: 760 PFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYS 812
Score = 35.8 bits (81), Expect(4) = 1e-78
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -1
Query: 1678 LGKKIEEKREKLESVQRRLQLQPSNVRLAQE-ELSTQVTTLKRYELDILKQKIKTKWALY 1502
L K++ + + L++ Q L PS+ E E L E L QK + W
Sbjct: 302 LEKRVVQAAQNLKTCQNNLLAAPSSYLAGLEKEAHRSWAELALAEERFLCQKSRVLWLKC 361
Query: 1501 GDDCTNYFHKMVKERKSRN 1445
GD T +FH+M+ R++ N
Sbjct: 362 GDSNTTFFHRMMTARRAIN 380
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 228 bits (580), Expect(2) = 2e-71
Identities = 113/235 (48%), Positives = 154/235 (65%)
Frame = -3
Query: 1070 LFPKLRTLTRWKSIEYRSIACCNMDYKTISKVLANRMKRVIESITYENQRAFIFGRHIQD 891
L PK++ TR K E+R IACC + YK ISK+L NRMK +I + E Q FI GRHI D
Sbjct: 501 LLPKVQHATRVK--EFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIAD 558
Query: 890 NLLLTHELLRKYHRKWISPRCTLKIDLQKAYDNVQWQAILDILTKMWFPQRYITWIQSCM 711
N+LL EL+R Y RK +SPRC +K+D++KAYD+V+W + +L + FP R++ WI C+
Sbjct: 559 NILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECV 618
Query: 710 TTPSYSIIINGQLVGFFQGKKGIRQGDPLSPSLFILLMEVLAAKMERARQIKLFNLHPKC 531
+T SYS+++NG FQ +KG+RQGDP+SP LF L ME L+ +E + FN HPKC
Sbjct: 619 STVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFHPKC 678
Query: 530 FNPIITHLCFADDLMIFCKAELSSTQAIISILESFGEVSGLNMNHNKSSIMVAGL 366
ITHL FADDL++FC+A+ SS + + F SGL +H KS+I G+
Sbjct: 679 ERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGV 733
Score = 70.9 bits (172), Expect(2) = 2e-71
Identities = 31/55 (56%), Positives = 44/55 (80%)
Frame = -2
Query: 327 PTKYLGMPLITTRLEISDCQPLIEAMTRRVKSWKAKVLSYAGRLQLIKSVLISIQ 163
P +YLG+PL + +L + C+PL+E +T R ++W AK+LSYAGRLQLIKS+L S+Q
Sbjct: 753 PFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQ 807
Score = 73.6 bits (179), Expect = 3e-10
Identities = 43/142 (30%), Positives = 72/142 (50%)
Frame = -2
Query: 1425 NGDRTESEEDVREEIEGYYKELLGSQNPKPCNADTLNEFTFKSTQNDQQLSNLXXXXXXX 1246
+G + ++V+EEI +YK+LLG++ D K + S +
Sbjct: 383 DGRVIQDADEVQEEILEFYKKLLGTRASTLMGVDLNTVRGGKCLSAQAKESLIREVASTE 442
Query: 1245 XXXTLFSIGDDKSAGPDGYGSYFSKKYWVIIKWDFLKAVKNFFRSARMLKIVNARNITLV 1066
L IG+DK+ G DG+ +YF KK W IK + ++ FF ++RM + +N +TL+
Sbjct: 443 IDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLL 502
Query: 1065 PKVENPNTVEEYRV*INCMLQY 1000
PKV++ V+E+R C + Y
Sbjct: 503 PKVQHATRVKEFRPIACCTVIY 524
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 208 bits (530), Expect(3) = 3e-68
Identities = 100/239 (41%), Positives = 158/239 (66%)
Frame = -3
Query: 1079 ISLLFPKLRTLTRWKSIEYRSIACCNMDYKTISKVLANRMKRVIESITYENQRAFIFGRH 900
I L PK T + +YR I+CCN+ YK ISK++ANR+K ++ + +NQ AF+ R
Sbjct: 655 ILALIPKKDEATLMR--DYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERL 712
Query: 899 IQDNLLLTHELLRKYHRKWISPRCTLKIDLQKAYDNVQWQAILDILTKMWFPQRYITWIQ 720
+ +N+LL EL++ YH+ ISPRC +KID+ KA+D+VQWQ +L+ L + FP+++ WI+
Sbjct: 713 LMENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALKFPEKFRHWIK 772
Query: 719 SCMTTPSYSIIINGQLVGFFQGKKGIRQGDPLSPSLFILLMEVLAAKMERARQIKLFNLH 540
C++T ++S+ +N + GFF K+G+RQG LSP LF++ M VL+ ++ A + H
Sbjct: 773 LCISTATFSVQVNSEQAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIGYH 832
Query: 539 PKCFNPIITHLCFADDLMIFCKAELSSTQAIISILESFGEVSGLNMNHNKSSIMVAGLS 363
PKC +THLCFADDLM+F + S + +I+I + F SGL+++ KS++ +A +S
Sbjct: 833 PKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKDFAGKSGLHISLEKSTLYLAEVS 891
Score = 60.8 bits (146), Expect(3) = 3e-68
Identities = 26/59 (44%), Positives = 41/59 (69%)
Frame = -2
Query: 327 PTKYLGMPLITTRLEISDCQPLIEAMTRRVKSWKAKVLSYAGRLQLIKSVLISIQLGYM 151
P +YLG PL+T ++ +D PL++ + ++ SW A+ LSYAGRL LI SV++S+ +M
Sbjct: 910 PVRYLGFPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWM 968
Score = 40.0 bits (92), Expect(3) = 3e-68
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 7/137 (5%)
Frame = -2
Query: 1578 LPKSL---HSKGMS*IY*NRKSKQNGLYMEMTAQIISIRWLRKGNQEIWGLIKANGDRTE 1408
LPK L + K S ++ + +N Y AQ+ R ++ +EI G NG +
Sbjct: 520 LPKHLEEGYMKQKSKLHWMKVGDRNNSYFHKAAQV---RRMQNSIREIQG---PNGVVLQ 573
Query: 1407 SEEDVREEIEGYYKELLGSQNPKPCNADTLNEF----TFKSTQNDQQLSNLXXXXXXXXX 1240
+ E+++ E E +++E L Q P T+ E +F+ + DQ +
Sbjct: 574 TSEEIKGEAERFFQEFLNHQ-PSDFQGMTVEELQNLMSFRCSATDQDMLT-REVTSEEIQ 631
Query: 1239 XTLFSIGDDKSAGPDGY 1189
LF++ +KS GPDGY
Sbjct: 632 KVLFAMPSNKSPGPDGY 648