BLASTX nr result
ID: Coptis24_contig00001249
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00001249
(2544 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containi... 530 e-148
ref|XP_002309456.1| predicted protein [Populus trichocarpa] gi|2... 491 e-136
gb|ABK96374.1| unknown [Populus trichocarpa x Populus deltoides] 490 e-136
ref|XP_002324203.1| predicted protein [Populus trichocarpa] gi|2... 483 e-133
ref|XP_002516159.1| pentatricopeptide repeat-containing protein,... 481 e-133
>ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 530 bits (1365), Expect = e-148
Identities = 274/434 (63%), Positives = 325/434 (74%), Gaps = 4/434 (0%)
Frame = +1
Query: 283 MNLSRKGFP-NNMTLNTAIKATALNPNAAEFVPFSLRSTPGSTSPGEAPAWDT-SGTSGK 456
M+LS+KG P NN+ L++ K T LNPNAAEFVPF+LRS+ GSTS G+A A T SGT GK
Sbjct: 1 MSLSKKGNPINNIKLDSTAKVTTLNPNAAEFVPFALRSSSGSTSTGDASARFTPSGTLGK 60
Query: 457 AVLDRTESSVSNNSDDEAHQYWRSHLPDDITPDFKFIEENETQGPASLPFARLSISDVGQ 636
A LDR+ESS+SNNSD+EAHQYWR LPDDITPDFK + E+E+Q L A LS+ D +
Sbjct: 61 AKLDRSESSISNNSDEEAHQYWRCQLPDDITPDFKVMGEDESQALGGLSLAGLSLHDSTE 120
Query: 637 NSSFSASLA--LNKQQELSPQGIQHNSVIEKLRYSATPYVSEQSSAGFATLPSNPWEKHF 810
S FSA LN+QQELSP + NS +K+RYSA+PY + SSA F LP+ PW+K
Sbjct: 121 TSRFSAGSGYILNEQQELSPHHVNGNSFTDKMRYSASPYGEDPSSATFLHLPNKPWDKQI 180
Query: 811 PNGDQILGNGREGLPYNGNSGTKFMKDVLSEHAISDDSEISAVEFLASQFPGFAAESLAE 990
+GDQ+L NGREG PYNGNS F+ D+L+EHA+ D+++++ +EFLA QFPGFAAESL E
Sbjct: 181 VHGDQLLSNGREGTPYNGNSRHGFVNDMLNEHAMVDETDMNPLEFLALQFPGFAAESLTE 240
Query: 991 VYYANGCDLNLTIEMLTQLELQVDGGFNQNLNSKTLSAPSLSAFDFPALLESDSQNGLEK 1170
VY+AN CDLN+TIEMLTQLELQVDGGF+QN+NSKTLSAP+LS DFP+L D QNGL K
Sbjct: 241 VYFANECDLNMTIEMLTQLELQVDGGFSQNMNSKTLSAPNLSGLDFPSLPVPDGQNGLPK 300
Query: 1171 YAGDNLQQSTSPYRSVDKDNLFFFKTGSSAQPRGAANFASAVKKFTPQDSGQSKFERYXX 1350
YAGD++QQ +PYRS DKDNL FK+ SS RGA +FASAV+K QDSG KF+R
Sbjct: 301 YAGDDIQQGVNPYRSSDKDNLLMFKSNSSIPSRGATDFASAVRKLATQDSGIWKFDRNGT 360
Query: 1351 XXXXXXXXXXXQILASSYGGGQGRSTYGDRPQNYGSPRGAPVWVETGEAVANMYSELREE 1530
+LASSY G GR TYGDR QN GS R AP WVETGEAVANMYSELREE
Sbjct: 361 ADVNVGSSRSSHVLASSYNSGHGRGTYGDRLQNRGSARVAPAWVETGEAVANMYSELREE 420
Query: 1531 ARDHARVRNAYFEQ 1572
ARDHAR+RNAYFEQ
Sbjct: 421 ARDHARLRNAYFEQ 434
>ref|XP_002309456.1| predicted protein [Populus trichocarpa] gi|222855432|gb|EEE92979.1|
predicted protein [Populus trichocarpa]
Length = 581
Score = 491 bits (1265), Expect = e-136
Identities = 260/439 (59%), Positives = 309/439 (70%), Gaps = 9/439 (2%)
Frame = +1
Query: 283 MNLSRKG-FPNNMTLNTAIKATALNPNAAEFVPFSLRSTPG-----STSPGEAPAWDTSG 444
M+LS+KG N+ LN KAT LNPNAAEFVPFSLRS+ S S A + TSG
Sbjct: 1 MSLSKKGSLTNDTKLNLPSKATTLNPNAAEFVPFSLRSSSSPSGSTSNSADAATKFTTSG 60
Query: 445 TSGKAVLDRTESSVSNNSDDEAHQYWRSHLPDDITPDFKFIEENETQGPASLPFARLSIS 624
T GKAVLDR+ESSVSN SDDEAHQ+WR LPDDITPDFK + ++E+QG L A LS+
Sbjct: 61 TVGKAVLDRSESSVSNASDDEAHQFWRHQLPDDITPDFKVMSDDESQGLGGLSLAGLSLH 120
Query: 625 DVGQ---NSSFSASLALNKQQELSPQGIQHNSVIEKLRYSATPYVSEQSSAGFATLPSNP 795
D ++S + L +QQE SP+ + +S EK+RY + Y + SSA F LP+ P
Sbjct: 121 DSEVPRFHASSRSGYVLTEQQEPSPRHMNGSSFGEKMRYPSASYGEDPSSASFLNLPTKP 180
Query: 796 WEKHFPNGDQILGNGREGLPYNGNSGTKFMKDVLSEHAISDDSEISAVEFLASQFPGFAA 975
W+K NGD +LGNGRE PYNGNS F ++L EHAI DD+EI+ + FLASQFPGFA
Sbjct: 181 WDKQIANGDHLLGNGREVHPYNGNSRHGFRSEILGEHAIVDDTEINPLGFLASQFPGFAT 240
Query: 976 ESLAEVYYANGCDLNLTIEMLTQLELQVDGGFNQNLNSKTLSAPSLSAFDFPALLESDSQ 1155
ESLAEVY+A+GCDLNLT+EMLTQLELQVDG FNQN NSKTLSAP+LSA DFPAL D+Q
Sbjct: 241 ESLAEVYFASGCDLNLTVEMLTQLELQVDGSFNQNTNSKTLSAPNLSALDFPALTVLDNQ 300
Query: 1156 NGLEKYAGDNLQQSTSPYRSVDKDNLFFFKTGSSAQPRGAANFASAVKKFTPQDSGQSKF 1335
NG KY GD+LQQ++ PYRS +KDN+ FK G S RGA +FASAV+K QDS K
Sbjct: 301 NGSSKYTGDDLQQASVPYRSSNKDNMLLFKPGGSFSSRGAVDFASAVRKLASQDSSMWKH 360
Query: 1336 ERYXXXXXXXXXXXXXQILASSYGGGQGRSTYGDRPQNYGSPRGAPVWVETGEAVANMYS 1515
+R +L S+YGGG GR Y DR Q+ GS R APVW+ETGEAVANMYS
Sbjct: 361 DRNGSADSTVGSSRSSHVLPSAYGGGHGRGIYADRLQSRGSGRQAPVWLETGEAVANMYS 420
Query: 1516 ELREEARDHARVRNAYFEQ 1572
E+REEARDHAR+RNAYFEQ
Sbjct: 421 EMREEARDHARLRNAYFEQ 439
>gb|ABK96374.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 581
Score = 490 bits (1262), Expect = e-136
Identities = 260/439 (59%), Positives = 308/439 (70%), Gaps = 9/439 (2%)
Frame = +1
Query: 283 MNLSRKG-FPNNMTLNTAIKATALNPNAAEFVPFSLRSTPG-----STSPGEAPAWDTSG 444
M+LS+KG N+ LN KAT LNPNAAEFVPFSLRS+ S S A + TSG
Sbjct: 1 MSLSKKGSLTNDTKLNLPSKATTLNPNAAEFVPFSLRSSSSPSGSTSNSADAATKFTTSG 60
Query: 445 TSGKAVLDRTESSVSNNSDDEAHQYWRSHLPDDITPDFKFIEENETQGPASLPFARLSIS 624
T GKAVLDR+ESSVSN SDDEAHQ+WR LPDDITPDFK + ++E+QG L A LS+
Sbjct: 61 TVGKAVLDRSESSVSNASDDEAHQFWRHQLPDDITPDFKVMSDDESQGLGGLSLAGLSLH 120
Query: 625 DVGQ---NSSFSASLALNKQQELSPQGIQHNSVIEKLRYSATPYVSEQSSAGFATLPSNP 795
D ++S + L +QQE SP+ + +S EK+RY + Y + SSA F LP+ P
Sbjct: 121 DSEVPRFHASSRSGYVLTEQQEPSPRHMNGSSFGEKMRYPSASYGEDPSSASFLNLPTKP 180
Query: 796 WEKHFPNGDQILGNGREGLPYNGNSGTKFMKDVLSEHAISDDSEISAVEFLASQFPGFAA 975
W+K NGD +LGNGRE PYNGNS F ++L EHAI DD+EI+ + FLASQFPGFA
Sbjct: 181 WDKQIANGDHLLGNGREVHPYNGNSRHGFRSEILGEHAIVDDTEINPLGFLASQFPGFAT 240
Query: 976 ESLAEVYYANGCDLNLTIEMLTQLELQVDGGFNQNLNSKTLSAPSLSAFDFPALLESDSQ 1155
ESLAEVY+A+GCDLNLT+EMLTQLELQVDG FNQN NSKTLSAP+LSA DFPAL D+Q
Sbjct: 241 ESLAEVYFASGCDLNLTVEMLTQLELQVDGSFNQNTNSKTLSAPNLSALDFPALTVLDNQ 300
Query: 1156 NGLEKYAGDNLQQSTSPYRSVDKDNLFFFKTGSSAQPRGAANFASAVKKFTPQDSGQSKF 1335
NG KY GD+LQQ++ PYRS +KDN FK G S RGA +FASAV+K QDS K
Sbjct: 301 NGSSKYTGDDLQQASVPYRSSNKDNTLLFKPGGSFSSRGAVDFASAVRKLASQDSSMWKH 360
Query: 1336 ERYXXXXXXXXXXXXXQILASSYGGGQGRSTYGDRPQNYGSPRGAPVWVETGEAVANMYS 1515
+R +L S+YGGG GR Y DR Q+ GS R APVW+ETGEAVANMYS
Sbjct: 361 DRNGSADSTVGSSRSSHVLPSAYGGGHGRGIYADRLQSRGSGRQAPVWLETGEAVANMYS 420
Query: 1516 ELREEARDHARVRNAYFEQ 1572
E+REEARDHAR+RNAYFEQ
Sbjct: 421 EMREEARDHARLRNAYFEQ 439
>ref|XP_002324203.1| predicted protein [Populus trichocarpa] gi|222865637|gb|EEF02768.1|
predicted protein [Populus trichocarpa]
Length = 583
Score = 483 bits (1243), Expect = e-133
Identities = 261/441 (59%), Positives = 308/441 (69%), Gaps = 11/441 (2%)
Frame = +1
Query: 283 MNLSRKG-FPNNMTLNTAIKATALNPNAAEFVPFSLRSTP---GSTS--PGEAPAWDTSG 444
MNLS+KG N+ L+ KAT LNPNAAEFVPFSLRS+ GSTS A TSG
Sbjct: 1 MNLSKKGSLTNDTKLSLPNKATTLNPNAAEFVPFSLRSSSSPSGSTSNTTDAATKLATSG 60
Query: 445 TSGKAVLDRTESSVSNNSDDEAHQYWRSHLPDDITPDFKFIEENETQGPASLPFARLSIS 624
T GK+VLDR+ESSVSN SDDEAHQ+WR LPDDITPDFK + E+E+QG L A LS+
Sbjct: 61 TVGKSVLDRSESSVSNASDDEAHQFWRHQLPDDITPDFKVMNEDESQGLGGLSLAGLSLH 120
Query: 625 DVGQNSSFSAS----LALNKQQELSPQGIQHNSVIEKLRYSATPYVSEQSSAGFATLPSN 792
D + F AS L +QQE SP I +S E +RY+ Y + +SA F LP+
Sbjct: 121 DSSEVPRFHASSRSGYVLTEQQEPSPHHINGSSFSENMRYAVASYGEDPTSASFLNLPTK 180
Query: 793 PWEKHFPNGDQILGNGREGLPYNGNSGTKFMKDVLSEHAISDDSEISAVEFLASQFPGFA 972
PW+K N DQ+L NGRE PYNGNS F ++L EHAI DD+EI+ +EFLASQFPGFA
Sbjct: 181 PWDKQIANSDQLLSNGREVHPYNGNSRHGFRSEILGEHAIVDDTEINPLEFLASQFPGFA 240
Query: 973 AESLAEVYYANGCDLNLTIEMLTQLELQVDGGFNQNLNSKTLSAP-SLSAFDFPALLESD 1149
AESLAEVY+AN CDLNLTIEMLTQLELQVDGGFNQ NSKT+SAP +LSA DFPAL D
Sbjct: 241 AESLAEVYFANACDLNLTIEMLTQLELQVDGGFNQTTNSKTVSAPTNLSALDFPALTVPD 300
Query: 1150 SQNGLEKYAGDNLQQSTSPYRSVDKDNLFFFKTGSSAQPRGAANFASAVKKFTPQDSGQS 1329
+QNG KYAGD+LQQ+ PYRS +KDN+ FK+G+S RGA +FASAV+K QDS
Sbjct: 301 NQNGPSKYAGDDLQQAGIPYRSSNKDNMLVFKSGASFSSRGAVDFASAVRKLASQDSSMW 360
Query: 1330 KFERYXXXXXXXXXXXXXQILASSYGGGQGRSTYGDRPQNYGSPRGAPVWVETGEAVANM 1509
+R +LAS+Y GG GR Y DR Q+ GS + APVW+ETGEAVA+M
Sbjct: 361 NHDRNGSADSTVGSSRSSHVLASAYSGGHGRGIYADRSQSRGSGQAAPVWLETGEAVASM 420
Query: 1510 YSELREEARDHARVRNAYFEQ 1572
YSE+REEARDHAR+RNAY EQ
Sbjct: 421 YSEMREEARDHARIRNAYLEQ 441
>ref|XP_002516159.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223544645|gb|EEF46161.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1439
Score = 481 bits (1239), Expect = e-133
Identities = 263/442 (59%), Positives = 311/442 (70%), Gaps = 12/442 (2%)
Frame = +1
Query: 283 MNLSRKGFPNNMT-LNTAIKATALNPNAAEFVPFSLRSTP---GSTSPGEAPA--WDTSG 444
M+LS+KG N T LN KATALNPNAAEFVPFSLRS GSTS A + TSG
Sbjct: 1 MSLSKKGSQTNTTKLNIPSKATALNPNAAEFVPFSLRSLSSPSGSTSNAAATTARFATSG 60
Query: 445 TSGKAVLDRTESSVSNNSDDEAHQYWRSHLPDDITPDFKFIEENETQGPASLPFARLSIS 624
GKAVLDR+ESS+S SD+EAHQ+WR LPDDITPDFK + E+E+Q L A LS+
Sbjct: 61 PVGKAVLDRSESSISTTSDEEAHQFWRHQLPDDITPDFKVMGEDESQSLGGLSLAGLSLH 120
Query: 625 DVGQNSSFSASLA----LNKQQELSPQGIQHNSVIEKLRYSATPYVSEQSSA-GFATLPS 789
D + F AS+ L +QQE SP+ I +S EK+RY+ Y + +SA G+ LP+
Sbjct: 121 DSSEVPKFPASVGSGYILTEQQEPSPRHINGSSFSEKMRYAIASYGEDPTSAAGYLNLPT 180
Query: 790 NPWEKHFPNGDQILGNGREGLPYNGNSGTKFMKDVLSEHAISDDSEISAVEFLASQFPGF 969
PW+K N D +LGNGRE PYNGNS FM D+L E AI D+ +++ ++FLAS FPGF
Sbjct: 181 KPWDKQIINNDHLLGNGREVHPYNGNSRRGFMNDMLGEQAIVDEPDMNPLDFLASHFPGF 240
Query: 970 AAESLAEVYYANGCDLNLTIEMLTQLELQVDGGFNQNLNSKTLSAPSLSAFDFPALLESD 1149
AAESLAEVY+ANG DLNLTIEMLTQLELQVDGGFNQN+NSK LSAP+LSA DFPAL D
Sbjct: 241 AAESLAEVYFANGYDLNLTIEMLTQLELQVDGGFNQNMNSKALSAPNLSAMDFPALPVPD 300
Query: 1150 SQNGLEKYAGDNLQQSTSPYRSVDKDNLFFFKTGSSAQPRGAA-NFASAVKKFTPQDSGQ 1326
SQN KY+GD++QQS +PYRS DK+N+ FK+ SS RG A +FASAV+K QDSG
Sbjct: 301 SQNSPSKYSGDDIQQSGNPYRSSDKENILLFKSSSSTPSRGGAIDFASAVRKLASQDSGI 360
Query: 1327 SKFERYXXXXXXXXXXXXXQILASSYGGGQGRSTYGDRPQNYGSPRGAPVWVETGEAVAN 1506
K+ER +LASSY G GR Y +R QN GS R APVW+ETGEAVAN
Sbjct: 361 WKYERNGSADSAVGSSRSSHVLASSYSSGNGRGIYSERAQNRGSARAAPVWLETGEAVAN 420
Query: 1507 MYSELREEARDHARVRNAYFEQ 1572
MYSELREEARDHAR+RNAYFEQ
Sbjct: 421 MYSELREEARDHARLRNAYFEQ 442