BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001230
         (2496 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285257.1| PREDICTED: exosome complex component MTR3 [V...   415   e-113
ref|XP_003606365.1| Exosome complex exonuclease MTR3 [Medicago t...   399   e-108
gb|AFK37792.1| unknown [Lotus japonicus]                              391   e-106
ref|XP_003538176.1| PREDICTED: exosome complex component MTR3-li...   391   e-106
ref|XP_003539769.1| PREDICTED: exosome complex component MTR3-li...   385   e-104

>ref|XP_002285257.1| PREDICTED: exosome complex component MTR3 [Vitis vinifera]
           gi|147834996|emb|CAN61380.1| hypothetical protein
           VITISV_037546 [Vitis vinifera]
           gi|297746275|emb|CBI16331.3| unnamed protein product
           [Vitis vinifera]
          Length = 254

 Score =  415 bits (1066), Expect = e-113
 Identities = 208/254 (81%), Positives = 229/254 (90%), Gaps = 4/254 (1%)
 Frame = +3

Query: 6   MAGKS----STYSLKKQHRLKKPLFKDLVDWVRPDTRGFHQCRPAFLRTGAVNAASGSAY 173
           MAGKS    STYS     + K+P+F+D VDWVRPD RGFHQCRPAFL+TGAVNAASGSAY
Sbjct: 1   MAGKSAATPSTYSPSPAPKTKRPIFQD-VDWVRPDGRGFHQCRPAFLKTGAVNAASGSAY 59

Query: 174 VEFGSTKVIVSVFGPRESKKAMLYSDIGRLNCNVSYTTFATSIRGQGSDHKEYSSMLHKA 353
            EFG+TKVIVSVFGPRESKKAM YS  GRLNCNVSYTTFA  IRGQGSDHK YSSMLHKA
Sbjct: 60  AEFGNTKVIVSVFGPRESKKAMAYSGTGRLNCNVSYTTFAMPIRGQGSDHKGYSSMLHKA 119

Query: 354 LEGAVMLESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVTSVSVSCLG 533
           LEGA+++ESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLV SVSVSCLG
Sbjct: 120 LEGAIIVESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCLG 179

Query: 534 KNLVLDPITEEESYQDGSLMITSMPSRNEVTQLTLTGEWSTPKIHEAMQLCLDACVKLGE 713
           KNLV+DPI EEESYQDGSL+IT MPSRNEVTQLT+ GEWSTP++HEAMQ+CL+AC KL +
Sbjct: 180 KNLVIDPILEEESYQDGSLLITCMPSRNEVTQLTVNGEWSTPRVHEAMQICLEACSKLAK 239

Query: 714 IMRSCLRESASAPE 755
           I+RSCL+E+ASAP+
Sbjct: 240 IIRSCLKETASAPK 253


>ref|XP_003606365.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
           gi|355507420|gb|AES88562.1| Exosome complex exonuclease
           MTR3 [Medicago truncatula]
          Length = 258

 Score =  399 bits (1026), Expect = e-108
 Identities = 203/251 (80%), Positives = 219/251 (87%), Gaps = 4/251 (1%)
 Frame = +3

Query: 6   MAGKS----STYSLKKQHRLKKPLFKDLVDWVRPDTRGFHQCRPAFLRTGAVNAASGSAY 173
           MAGKS    +TYS       KKPL     DW RPD RGFHQCRPAF RTGAVNAASGSAY
Sbjct: 1   MAGKSGTTPATYSPSLTTGKKKPLLLKEEDWTRPDGRGFHQCRPAFFRTGAVNAASGSAY 60

Query: 174 VEFGSTKVIVSVFGPRESKKAMLYSDIGRLNCNVSYTTFATSIRGQGSDHKEYSSMLHKA 353
            EFG+TKVIVSVFGPRESKKAM+YSD GRLNCNVSYTTF+T +RGQGSDHKEYSSMLHKA
Sbjct: 61  AEFGNTKVIVSVFGPRESKKAMMYSDTGRLNCNVSYTTFSTPVRGQGSDHKEYSSMLHKA 120

Query: 354 LEGAVMLESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVTSVSVSCLG 533
           LEGA++L+SFPKTTVDVFALVLES GSDLPVVIS ASLALADAGI+MYDLV SVSVSCLG
Sbjct: 121 LEGAIILDSFPKTTVDVFALVLESSGSDLPVVISVASLALADAGILMYDLVASVSVSCLG 180

Query: 534 KNLVLDPITEEESYQDGSLMITSMPSRNEVTQLTLTGEWSTPKIHEAMQLCLDACVKLGE 713
           KNLV+DPI EEE+ QDGSLMIT MPSR E+TQLT+TGEWSTPKI+E MQLCLDAC KL +
Sbjct: 181 KNLVIDPIFEEENSQDGSLMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACAKLAK 240

Query: 714 IMRSCLRESAS 746
           IMRSCL+ESAS
Sbjct: 241 IMRSCLKESAS 251


>gb|AFK37792.1| unknown [Lotus japonicus]
          Length = 253

 Score =  391 bits (1005), Expect = e-106
 Identities = 199/255 (78%), Positives = 223/255 (87%), Gaps = 5/255 (1%)
 Frame = +3

Query: 6   MAGKS----STYSLKKQHRLKKP-LFKDLVDWVRPDTRGFHQCRPAFLRTGAVNAASGSA 170
           MAGK+    +TYS       KK  L K+  DWVRPD RGFHQCRPAF RTGAVNAASGSA
Sbjct: 1   MAGKAGATPATYSPSPTTDKKKTSLIKE--DWVRPDGRGFHQCRPAFFRTGAVNAASGSA 58

Query: 171 YVEFGSTKVIVSVFGPRESKKAMLYSDIGRLNCNVSYTTFATSIRGQGSDHKEYSSMLHK 350
           Y EFG+TKVIVSVFGPRESKKAMLYSD+GRLNCNVSYTTFAT +RGQGSDHK+YS+ML K
Sbjct: 59  YAEFGNTKVIVSVFGPRESKKAMLYSDVGRLNCNVSYTTFATPVRGQGSDHKDYSAMLDK 118

Query: 351 ALEGAVMLESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVTSVSVSCL 530
           AL GA++LESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLV SVSVSCL
Sbjct: 119 ALGGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCL 178

Query: 531 GKNLVLDPITEEESYQDGSLMITSMPSRNEVTQLTLTGEWSTPKIHEAMQLCLDACVKLG 710
            KNLV+DPI+EEE+ QDGS+MIT MPSR E+TQLT+TGEWSTPKI+E MQLCLDAC KL 
Sbjct: 179 SKNLVIDPISEEENCQDGSIMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACAKLA 238

Query: 711 EIMRSCLRESASAPE 755
           ++MRSCL+E++ + +
Sbjct: 239 KVMRSCLKEASDSQD 253


>ref|XP_003538176.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
          Length = 255

 Score =  391 bits (1004), Expect = e-106
 Identities = 201/257 (78%), Positives = 220/257 (85%), Gaps = 6/257 (2%)
 Frame = +3

Query: 6   MAGKS----STYSLKKQHRLKK--PLFKDLVDWVRPDTRGFHQCRPAFLRTGAVNAASGS 167
           MAGK     +TYS       KK  P+FK+  DWVRPD RGFHQCRPAF RTGAVNAASGS
Sbjct: 1   MAGKGGATPATYSPSPTTNRKKKPPIFKE--DWVRPDGRGFHQCRPAFFRTGAVNAASGS 58

Query: 168 AYVEFGSTKVIVSVFGPRESKKAMLYSDIGRLNCNVSYTTFATSIRGQGSDHKEYSSMLH 347
           AY EFG+TKVIVSVFGPRESKKAM+YSDIGRLNCNVS+TTFAT IRGQGSDHKEY +MLH
Sbjct: 59  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPIRGQGSDHKEYCAMLH 118

Query: 348 KALEGAVMLESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVTSVSVSC 527
           KALEGA++LE+FPKTTVDVFALVLES GSDLPVVISCASLALADAGIMMYD+V SVSVSC
Sbjct: 119 KALEGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDIVASVSVSC 178

Query: 528 LGKNLVLDPITEEESYQDGSLMITSMPSRNEVTQLTLTGEWSTPKIHEAMQLCLDACVKL 707
             KNLV+DPI EEE  QDGSLMIT MPSR E+TQLT+TGEWST KI+E MQLCLDAC KL
Sbjct: 179 FNKNLVIDPILEEEIGQDGSLMITCMPSRYEITQLTVTGEWSTTKINEGMQLCLDACAKL 238

Query: 708 GEIMRSCLRESASAPEQ 758
            +IMRSCL+E AS  ++
Sbjct: 239 AKIMRSCLKEVASDSQE 255


>ref|XP_003539769.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
          Length = 254

 Score =  385 bits (989), Expect = e-104
 Identities = 199/256 (77%), Positives = 218/256 (85%), Gaps = 5/256 (1%)
 Frame = +3

Query: 6   MAGKS----STYSLKKQHRLKKP-LFKDLVDWVRPDTRGFHQCRPAFLRTGAVNAASGSA 170
           MAGK     +TYS       KKP LF +  D  RPD R FHQCRPAF RTGAVNAASGSA
Sbjct: 1   MAGKGGSTPATYSPSPTTDKKKPSLFNE--DLARPDGRSFHQCRPAFFRTGAVNAASGSA 58

Query: 171 YVEFGSTKVIVSVFGPRESKKAMLYSDIGRLNCNVSYTTFATSIRGQGSDHKEYSSMLHK 350
           Y E G+TKVIVSVFGPRESKKAM+YSDIGRLNCNVS+TTFAT IRGQGSDHKEYSSMLHK
Sbjct: 59  YAEVGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPIRGQGSDHKEYSSMLHK 118

Query: 351 ALEGAVMLESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVTSVSVSCL 530
           ALEGA++LE+FPKTTVDVFALVLES GSDLPVVISCASLALADAGIMMYDLV SVSVSC 
Sbjct: 119 ALEGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDLVASVSVSCF 178

Query: 531 GKNLVLDPITEEESYQDGSLMITSMPSRNEVTQLTLTGEWSTPKIHEAMQLCLDACVKLG 710
            KNLV+DP+ EEE+ QDGSLMIT MPSR E+TQLT+TGEWSTPKI+E MQLCLDAC KL 
Sbjct: 179 NKNLVIDPVLEEENGQDGSLMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACAKLA 238

Query: 711 EIMRSCLRESASAPEQ 758
           +IMRSCL+E+ S  ++
Sbjct: 239 KIMRSCLKEAVSDSQE 254