BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001229
         (1669 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...   856   0.0  
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...   842   0.0  
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...   841   0.0  
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...   838   0.0  
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh...   837   0.0  

>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera] gi|147841183|emb|CAN72948.1| hypothetical
            protein VITISV_033708 [Vitis vinifera]
            gi|302143287|emb|CBI21848.3| unnamed protein product
            [Vitis vinifera]
          Length = 1193

 Score =  856 bits (2212), Expect = 0.0
 Identities = 418/429 (97%), Positives = 423/429 (98%)
 Frame = +2

Query: 2    KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 181
            KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR
Sbjct: 765  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 824

Query: 182  DEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAP 361
            DEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ 
Sbjct: 825  DEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 884

Query: 362  DESSGVASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSS 541
            D+S G ASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSS
Sbjct: 885  DDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSS 944

Query: 542  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHVGKEG 721
            RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH+GKEG
Sbjct: 945  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1004

Query: 722  DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 901
            DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK
Sbjct: 1005 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1064

Query: 902  IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHV 1081
            IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHV
Sbjct: 1065 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHV 1124

Query: 1082 CERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEIKP 1261
            CERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE+KP
Sbjct: 1125 CERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEVKP 1184

Query: 1262 SKDNKKKAS 1288
             KD KKK +
Sbjct: 1185 PKDQKKKGA 1193


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score =  842 bits (2176), Expect = 0.0
 Identities = 409/429 (95%), Positives = 422/429 (98%)
 Frame = +2

Query: 2    KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 181
            KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR
Sbjct: 766  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 825

Query: 182  DEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAP 361
            DEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIA 
Sbjct: 826  DEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQ 885

Query: 362  DESSGVASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSS 541
            +E+ G ++RYTRRDHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSS
Sbjct: 886  EEAQGQSARYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945

Query: 542  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHVGKEG 721
            RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH+GKEG
Sbjct: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005

Query: 722  DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 901
            DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK
Sbjct: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065

Query: 902  IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHV 1081
            IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHV
Sbjct: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHV 1125

Query: 1082 CERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEIKP 1261
            CERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK++KP
Sbjct: 1126 CERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKP 1185

Query: 1262 SKDNKKKAS 1288
            +KD KKK +
Sbjct: 1186 TKDQKKKGA 1194


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score =  841 bits (2173), Expect = 0.0
 Identities = 407/427 (95%), Positives = 421/427 (98%)
 Frame = +2

Query: 2    KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 181
            KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR
Sbjct: 763  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 822

Query: 182  DEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAP 361
            DEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDV+IGKTTPIA 
Sbjct: 823  DEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQ 882

Query: 362  DESSGVASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSS 541
            DE+ G A+RYTRRDHSTSLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSS
Sbjct: 883  DEAQGPAARYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 942

Query: 542  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHVGKEG 721
            RHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH+GKEG
Sbjct: 943  RHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1002

Query: 722  DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 901
            DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT+MIFLGPTYYQRLKHMVDDK
Sbjct: 1003 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDK 1062

Query: 902  IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHV 1081
            IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HV
Sbjct: 1063 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHV 1122

Query: 1082 CERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEIKP 1261
            CERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTK++K 
Sbjct: 1123 CERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKDVKQ 1182

Query: 1262 SKDNKKK 1282
            +KD KKK
Sbjct: 1183 AKDKKKK 1189


>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
            gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
            Full=DNA-directed RNA polymerase II subunit RPB2;
            Short=RNA polymerase II subunit 2; Short=RNA polymerase
            II subunit B2; AltName: Full=DNA-directed RNA polymerase
            II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
            polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score =  838 bits (2165), Expect = 0.0
 Identities = 407/429 (94%), Positives = 422/429 (98%)
 Frame = +2

Query: 2    KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 181
            KPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR
Sbjct: 763  KPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 822

Query: 182  DEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAP 361
            DEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ 
Sbjct: 823  DEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 882

Query: 362  DESSGVASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSS 541
            D++ G ASRYTR+DHSTSLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSS
Sbjct: 883  DDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 942

Query: 542  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHVGKEG 721
            RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH+GKEG
Sbjct: 943  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1002

Query: 722  DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 901
            DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDK
Sbjct: 1003 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDK 1062

Query: 902  IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHV 1081
            IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHV
Sbjct: 1063 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHV 1122

Query: 1082 CERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEIKP 1261
            CERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK++K 
Sbjct: 1123 CERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKL 1182

Query: 1262 SKDNKKKAS 1288
            +KD KKK +
Sbjct: 1183 AKDQKKKGA 1191


>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1200

 Score =  837 bits (2162), Expect = 0.0
 Identities = 404/429 (94%), Positives = 423/429 (98%)
 Frame = +2

Query: 2    KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 181
            KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR
Sbjct: 772  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 831

Query: 182  DEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAP 361
            DEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTR SGEDVIIGKTTPI+P
Sbjct: 832  DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCSGEDVIIGKTTPISP 891

Query: 362  DESSGVASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSS 541
            D++ G A+RYT+RDHSTSLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSS
Sbjct: 892  DDAQGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 951

Query: 542  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHVGKEG 721
            RHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIECIMGKVAAH+GKEG
Sbjct: 952  RHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1011

Query: 722  DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 901
            DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL++MIFLGPTYYQRLKHMVDDK
Sbjct: 1012 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSSMIFLGPTYYQRLKHMVDDK 1071

Query: 902  IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHV 1081
            IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HV
Sbjct: 1072 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHV 1131

Query: 1082 CERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEIKP 1261
            CE+CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTK+IK 
Sbjct: 1132 CEQCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKDIKQ 1191

Query: 1262 SKDNKKKAS 1288
            SK+ +KKA+
Sbjct: 1192 SKEQRKKAA 1200