BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00001213
         (4756 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsi...    49   2e-07
gb|AAC28207.1| T24H24.13 gene product [Arabidopsis thaliana] gi|...    45   3e-07
emb|CAN77143.1| hypothetical protein VITISV_038338 [Vitis vinifera]    45   4e-07
emb|CAN77145.1| hypothetical protein VITISV_038340 [Vitis vinifera]    43   4e-06

>gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 889

 Score = 48.5 bits (114), Expect(2) = 2e-07
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
 Frame = +2

Query: 1535 FPLMNWDSPYNAILGRDWLHVV----STYHQAVKFPVPGRIQKIRSKQMASHITHRLALR 1702
            F +++  +P+NAILGR WLHV+    STYHQ +KFP    I  +   Q +S   +  +  
Sbjct: 141  FLVVDKKAPFNAILGRPWLHVMKAVPSTYHQCIKFPSYKGIAVVYGSQRSSRKCYMGSYE 200

Query: 1703 SYQRISEIVLFI 1738
              ++   +VL I
Sbjct: 201  DIKKADPVVLMI 212



 Score = 36.6 bits (83), Expect(2) = 2e-07
 Identities = 24/103 (23%), Positives = 45/103 (43%)
 Frame = +1

Query: 1183 SSEQQHGLYRTNKCGNHITSPVVLYR*EQLEVYHPHYNTILITAKIGLHTTK*VMIDTKS 1362
            SS++   L++  K  + IT     +  E  ++  PH + ++I   +G +    +M+DT S
Sbjct: 30   SSKESRFLHKRQKPDDGIT----FWESEITDLDKPHDDALVIRIDVGNYELSCIMVDTGS 85

Query: 1363 SISVLSTNCYNPINQTGDIIIPEDNPITGLDNTAATPVGAITL 1491
            S+ VL  + +         +     P+TG        +G I L
Sbjct: 86   SVDVLFYDAFKRTGHLDSKLQGRKTPLTGFAGDTTFSIGTIQL 128


>gb|AAC28207.1| T24H24.13 gene product [Arabidopsis thaliana]
            gi|7267161|emb|CAB77873.1| putative transposon protein
            [Arabidopsis thaliana]
          Length = 681

 Score = 45.4 bits (106), Expect(2) = 3e-07
 Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 4/36 (11%)
 Frame = +2

Query: 1535 FPLMNWDSPYNAILGRDWLH----VVSTYHQAVKFP 1630
            F ++N  +P+NAILGR WLH    V STYHQ +KFP
Sbjct: 615  FLVVNKKAPFNAILGRPWLHAMKAVPSTYHQCIKFP 650



 Score = 38.9 bits (89), Expect(2) = 3e-07
 Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 5/151 (3%)
 Frame = +1

Query: 1087 HIGHARVDFMTNSQQTVEKRLKFQFFPSKFIRSSEQQHGLYRTNKCG----NHITSPVVL 1254
            H+   R+DF+    Q     +         I++ +++   Y   K      NH    +  
Sbjct: 474  HLSPKRIDFIMGGSQLCNDSINS-------IKTHQRKADSYTKGKSPMMGPNH---QITF 523

Query: 1255 YR*EQLEVYHPHYNTILITAKIGLHTTK*VMIDTKSSISVLSTNCYNPINQTGDIIIPED 1434
            +  E  ++  PH + ++I   +G +    +MIDT SS+ VL  + +  +      +    
Sbjct: 524  WESETTDLNKPHDDALVIRIDVGNYELSHIMIDTGSSVDVLFYDAFKRMGHLDSELQGRK 583

Query: 1435 NPITGLDNTAATPVGAITL-LVRTGAKALES 1524
             P+TG        +G I L  +  G + L S
Sbjct: 584  TPLTGFAGDTTFSLGTIQLPTIARGVRRLTS 614


>emb|CAN77143.1| hypothetical protein VITISV_038338 [Vitis vinifera]
          Length = 605

 Score = 45.1 bits (105), Expect(2) = 4e-07
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
 Frame = +1

Query: 1234 ITSPVVLYR*EQLEVYHPHYNTILITAKIGLHTTK*VMIDTKSSISVLSTNCYNPINQTG 1413
            I   +V    +   V HPH + +++T  +G    K +++D  SS  +L       I Q G
Sbjct: 429  IDGTIVFPTIDPARVLHPHRDALILTLGVGDFDVKRILVDLGSSADLLQVAV---IKQMG 485

Query: 1414 DIIIPEDNP---ITGLDNTAATPVGAITLLVRTGAKAL 1518
             I    +NP   ++G + ++ T +G +TLLV+TG   L
Sbjct: 486  FIPSSLENPGRTLSGFNGSSTTSLGDVTLLVQTGPVTL 523



 Score = 38.5 bits (88), Expect(2) = 4e-07
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
 Frame = +2

Query: 1520 SLDVRFPLMNWDSPYNAILGRDWLH----VVSTYHQAVKF-PVPGRIQKIRSKQMA 1672
            +L+V F ++   SP+NAILG  WLH    + STYHQ V F    G+I   RS+  A
Sbjct: 522  TLNVLFFVVEDLSPFNAILGCTWLHGMKDIPSTYHQMVSFITQDGQIDLYRSQLAA 577


>emb|CAN77145.1| hypothetical protein VITISV_038340 [Vitis vinifera]
          Length = 539

 Score = 43.1 bits (100), Expect(2) = 4e-06
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
 Frame = +2

Query: 1520 SLDVRFPLMNWDSPYNAILGRDWLH----VVSTYHQAVKFPVPGRIQKIRSKQMASHITH 1687
            +L+V+F ++   SP+NAILGR WLH    + STYHQ V F        +   Q+A+   +
Sbjct: 456  TLNVQFLVVGDLSPFNAILGRTWLHYMKTIPSTYHQMVSFLTEDGQIDLYGSQLAARQCY 515

Query: 1688 RLA 1696
            ++A
Sbjct: 516  QIA 518



 Score = 37.4 bits (85), Expect(2) = 4e-06
 Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 3/154 (1%)
 Frame = +1

Query: 1066 VINYFIIHIGHARVDFMTNSQQTVEKRLKFQFFPSKFIRSSEQQHGLYRTNKCGNHITSP 1245
            VINY  IH G    ++ +       KR K +   +K +R          T      I   
Sbjct: 316  VINY--IHRGPLDEEYNS-------KRKKQRLLRAKSVRECINSIWPGITGGSARPIDGT 366

Query: 1246 VVLYR*EQLEVYHPHYNTILITAKIGLHTTK*VMIDTKSSISVLSTNCYNPINQTGDIII 1425
            +V    +   +  PH + +++   IG    + ++ID  +S+ +L  +    INQ G  + 
Sbjct: 367  IVFPPIDPTRILQPHRDALILFLGIGDFDVRRILIDPGNSVDLLQASV---INQMGLELS 423

Query: 1426 PEDNP---ITGLDNTAATPVGAITLLVRTGAKAL 1518
              +NP   ++G +  A T +G I L V+ G   L
Sbjct: 424  DLENPGLILSGFNGAATTSLGDIMLSVQVGPVTL 457