BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000992
         (270 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...   164   7e-39
gb|AAZ08466.1| RNA polymerase II second largest subunit [Linanth...   164   7e-39
gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanu...   164   7e-39
gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis p...   164   7e-39
gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrh...   164   7e-39

>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
           vinifera] gi|147841183|emb|CAN72948.1| hypothetical
           protein VITISV_033708 [Vitis vinifera]
           gi|302143287|emb|CBI21848.3| unnamed protein product
           [Vitis vinifera]
          Length = 1193

 Score =  164 bits (415), Expect = 7e-39
 Identities = 82/88 (93%), Positives = 83/88 (94%), Gaps = 3/88 (3%)
 Frame = +3

Query: 3   NAAGTRGGVSQVLNHLTYASTLSHLRRLNSPIGREGKLAKPQQLHNSHWGMMCPAETPEG 182
           NAAGTR GVSQVLN LTYASTLSHLRRLNSPIGREGKLAKP+QLHNSHWGMMCPAETPEG
Sbjct: 463 NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG 522

Query: 183 QACGLVKNLALMVYITV---ANPILEFL 257
           QACGLVKNLALMVYITV   ANPILEFL
Sbjct: 523 QACGLVKNLALMVYITVGSAANPILEFL 550


>gb|AAZ08466.1| RNA polymerase II second largest subunit [Linanthus californicus]
          Length = 324

 Score =  164 bits (415), Expect = 7e-39
 Identities = 82/88 (93%), Positives = 83/88 (94%), Gaps = 3/88 (3%)
 Frame = +3

Query: 3   NAAGTRGGVSQVLNHLTYASTLSHLRRLNSPIGREGKLAKPQQLHNSHWGMMCPAETPEG 182
           NAAGTR GVSQVLN LTYASTLSHLRRLNSPIGREGKLAKP+QLHNSHWGMMCPAETPEG
Sbjct: 51  NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG 110

Query: 183 QACGLVKNLALMVYITV---ANPILEFL 257
           QACGLVKNLALMVYITV   ANPILEFL
Sbjct: 111 QACGLVKNLALMVYITVGSAANPILEFL 138


>gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
          Length = 923

 Score =  164 bits (415), Expect = 7e-39
 Identities = 82/88 (93%), Positives = 83/88 (94%), Gaps = 3/88 (3%)
 Frame = +3

Query: 3   NAAGTRGGVSQVLNHLTYASTLSHLRRLNSPIGREGKLAKPQQLHNSHWGMMCPAETPEG 182
           NAAGTR GVSQVLN LTYASTLSHLRRLNSPIGREGKLAKP+QLHNSHWGMMCPAETPEG
Sbjct: 329 NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG 388

Query: 183 QACGLVKNLALMVYITV---ANPILEFL 257
           QACGLVKNLALMVYITV   ANPILEFL
Sbjct: 389 QACGLVKNLALMVYITVGSAANPILEFL 416


>gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
          Length = 951

 Score =  164 bits (415), Expect = 7e-39
 Identities = 82/88 (93%), Positives = 83/88 (94%), Gaps = 3/88 (3%)
 Frame = +3

Query: 3   NAAGTRGGVSQVLNHLTYASTLSHLRRLNSPIGREGKLAKPQQLHNSHWGMMCPAETPEG 182
           NAAGTR GVSQVLN LTYASTLSHLRRLNSPIGREGKLAKP+QLHNSHWGMMCPAETPEG
Sbjct: 357 NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG 416

Query: 183 QACGLVKNLALMVYITV---ANPILEFL 257
           QACGLVKNLALMVYITV   ANPILEFL
Sbjct: 417 QACGLVKNLALMVYITVGSAANPILEFL 444


>gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1198

 Score =  164 bits (415), Expect = 7e-39
 Identities = 82/88 (93%), Positives = 83/88 (94%), Gaps = 3/88 (3%)
 Frame = +3

Query: 3   NAAGTRGGVSQVLNHLTYASTLSHLRRLNSPIGREGKLAKPQQLHNSHWGMMCPAETPEG 182
           NAAGTR GVSQVLN LTYASTLSHLRRLNSPIGREGKLAKP+QLHNSHWGMMCPAETPEG
Sbjct: 470 NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG 529

Query: 183 QACGLVKNLALMVYITV---ANPILEFL 257
           QACGLVKNLALMVYITV   ANPILEFL
Sbjct: 530 QACGLVKNLALMVYITVGSAANPILEFL 557