BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000991
         (928 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo...   595   e-168
gb|AAY85204.1| RNA polymerase II second largest subunit [Dilleni...   591   e-167
gb|AAY89340.1| RNA polymerase II second largest subunit [Berberi...   590   e-166
gb|AAY85235.1| RNA polymerase II second largest subunit [Tetrace...   590   e-166
gb|AAY85208.1| RNA polymerase II second largest subunit [Euptele...   590   e-166

>gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo nucifera]
          Length = 865

 Score =  595 bits (1533), Expect = e-168
 Identities = 294/308 (95%), Positives = 297/308 (96%)
 Frame = +3

Query: 3    NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG 182
            NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG
Sbjct: 349  NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG 408

Query: 183  QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH 362
            QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH
Sbjct: 409  QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH 468

Query: 363  RNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK 542
            RNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK
Sbjct: 469  RNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK 528

Query: 543  DIMALQQRESAEEGGWHELVEKGYIEYVDXXXXXXXMISMTINDLVQARLKPEEAYSETY 722
            DI ALQQRES+EEGGWH+LV KG+IEYVD       MISMTINDLV ARL PEEAYSETY
Sbjct: 529  DIRALQQRESSEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVTARLNPEEAYSETY 588

Query: 723  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 902
            THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY
Sbjct: 589  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 648

Query: 903  PQKPLVTT 926
            PQKPLVTT
Sbjct: 649  PQKPLVTT 656


>gb|AAY85204.1| RNA polymerase II second largest subunit [Dillenia suffruticosa]
          Length = 868

 Score =  591 bits (1523), Expect = e-167
 Identities = 291/308 (94%), Positives = 296/308 (96%)
 Frame = +3

Query: 3    NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG 182
            NAAGTRAGVSQVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG
Sbjct: 352  NAAGTRAGVSQVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG 411

Query: 183  QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH 362
            QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH
Sbjct: 412  QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH 471

Query: 363  RNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK 542
            RNP+LLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK
Sbjct: 472  RNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK 531

Query: 543  DIMALQQRESAEEGGWHELVEKGYIEYVDXXXXXXXMISMTINDLVQARLKPEEAYSETY 722
            DI ALQQRES EEGGWH+LV KG+IEYVD       MISMTINDLV ARL PEEAYS+TY
Sbjct: 532  DIRALQQRESPEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEAYSDTY 591

Query: 723  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 902
            THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY
Sbjct: 592  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 651

Query: 903  PQKPLVTT 926
            PQKPLVTT
Sbjct: 652  PQKPLVTT 659


>gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri]
          Length = 873

 Score =  590 bits (1522), Expect = e-166
 Identities = 290/308 (94%), Positives = 296/308 (96%)
 Frame = +3

Query: 3    NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG 182
            NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG
Sbjct: 357  NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG 416

Query: 183  QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH 362
            QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH
Sbjct: 417  QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH 476

Query: 363  RNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK 542
            RNP+LLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK
Sbjct: 477  RNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK 536

Query: 543  DIMALQQRESAEEGGWHELVEKGYIEYVDXXXXXXXMISMTINDLVQARLKPEEAYSETY 722
            DI ALQQRES E+GGWH+LV KG+IEYVD       MISMTINDL+ A+L PEEAYSETY
Sbjct: 537  DIQALQQRESHEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLISAKLNPEEAYSETY 596

Query: 723  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 902
            THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY
Sbjct: 597  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 656

Query: 903  PQKPLVTT 926
            PQKPLVTT
Sbjct: 657  PQKPLVTT 664


>gb|AAY85235.1| RNA polymerase II second largest subunit [Tetracentron sinense]
          Length = 951

 Score =  590 bits (1522), Expect = e-166
 Identities = 290/308 (94%), Positives = 296/308 (96%)
 Frame = +3

Query: 3    NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG 182
            NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG
Sbjct: 357  NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG 416

Query: 183  QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH 362
            QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH
Sbjct: 417  QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH 476

Query: 363  RNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK 542
            RNP+LLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK
Sbjct: 477  RNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK 536

Query: 543  DIMALQQRESAEEGGWHELVEKGYIEYVDXXXXXXXMISMTINDLVQARLKPEEAYSETY 722
            DI ALQQRES EEGGWH+LV KGYIEYVD       MISMTINDL+ A+L PEEAYS+TY
Sbjct: 537  DIRALQQRESPEEGGWHDLVAKGYIEYVDTEEEETTMISMTINDLITAKLNPEEAYSDTY 596

Query: 723  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 902
            THCEIHPSLILGVCASIIPFPDHNQ+PRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY
Sbjct: 597  THCEIHPSLILGVCASIIPFPDHNQTPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 656

Query: 903  PQKPLVTT 926
            PQKPLVTT
Sbjct: 657  PQKPLVTT 664


>gb|AAY85208.1| RNA polymerase II second largest subunit [Euptelea polyandra]
          Length = 874

 Score =  590 bits (1522), Expect = e-166
 Identities = 290/308 (94%), Positives = 296/308 (96%)
 Frame = +3

Query: 3    NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG 182
            NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG
Sbjct: 357  NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEG 416

Query: 183  QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH 362
            QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH
Sbjct: 417  QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH 476

Query: 363  RNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK 542
            RNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK
Sbjct: 477  RNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK 536

Query: 543  DIMALQQRESAEEGGWHELVEKGYIEYVDXXXXXXXMISMTINDLVQARLKPEEAYSETY 722
            DI ALQQRES ++GGWH+LV KG+IEYVD       MISMTINDL+ AR+ PEEAYSETY
Sbjct: 537  DIRALQQRESPDDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLITARINPEEAYSETY 596

Query: 723  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 902
            THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY
Sbjct: 597  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 656

Query: 903  PQKPLVTT 926
            PQKPLVTT
Sbjct: 657  PQKPLVTT 664