BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000981
         (838 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD15377.1| putative non-LTR retroelement reverse transcripta...   218   2e-54
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...   216   4e-54
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...   215   9e-54
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...   213   4e-53
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677...   213   4e-53

>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1044

 Score =  218 bits (554), Expect = 2e-54
 Identities = 109/278 (39%), Positives = 173/278 (62%)
 Frame = -2

Query: 837  MRPILLKIISPHQSAFLPNRSFHDNALLTHEAFHTIRSKYNLKQNYFALKLDLQKAYDKL 658
            ++PIL +IIS +QSAF+P R+ +DN L+THEA H ++S    K+ + A+K ++ KAYD++
Sbjct: 351  LQPILQEIISENQSAFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRI 410

Query: 657  EWGFLQKVLRAFGFDETFVRKIMFCVKSVSYSVLLNGSPFGYFYPTRGIRQGDPMSPYLF 478
            EW F++ V++  GF +T++  I+ C+ +VSYS LLNGS  G   P RG+RQGDP+SP+LF
Sbjct: 411  EWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLF 470

Query: 477  IICAEVLSLKLLELQSNSDYDGIKLARNCQPLTHLMYADDIIIYGKTDLKQAVDINKVLE 298
            IIC+EVLS    + Q +    G+++++    + HL++ADD I + ++DLK       +L+
Sbjct: 471  IICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILK 530

Query: 297  EYCVVAGQSINRSKSQFIHHKKLHPKFAKLMFKIFKVPTTHHFPSYLGVPSVLGRAHQDK 118
            +Y   +GQ IN+SKS     +K          +I  +        YLG+P + GR  +D 
Sbjct: 531  KYEEASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDL 590

Query: 117  FQPLVQRFRDRLAKWKTILLSKGGRLTLINSVLSALPS 4
            F  +V R R R   W +  LS  G+ T++ SVL+++P+
Sbjct: 591  FNQIVDRIRQRSLSWSSRFLSTAGKTTMLKSVLASMPT 628


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
            gi|7267666|emb|CAB78094.1| RNA-directed DNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score =  216 bits (551), Expect = 4e-54
 Identities = 112/278 (40%), Positives = 165/278 (59%)
 Frame = -2

Query: 837  MRPILLKIISPHQSAFLPNRSFHDNALLTHEAFHTIRSKYNLKQNYFALKLDLQKAYDKL 658
            ++P L ++IS HQSAF+P R+  DN L+THE  H +R     K    A+K D+ KAYD++
Sbjct: 466  LQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRI 525

Query: 657  EWGFLQKVLRAFGFDETFVRKIMFCVKSVSYSVLLNGSPFGYFYPTRGIRQGDPMSPYLF 478
            +W FLQ+VL   GF + ++R +M CV +VSYS L+NGSP G   P+RG+RQGDP+SPYLF
Sbjct: 526  KWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLF 585

Query: 477  IICAEVLSLKLLELQSNSDYDGIKLARNCQPLTHLMYADDIIIYGKTDLKQAVDINKVLE 298
            I+C EVLS    + Q      GI++AR    + HL++ADD + + KT+      ++ +L+
Sbjct: 586  ILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILK 645

Query: 297  EYCVVAGQSINRSKSQFIHHKKLHPKFAKLMFKIFKVPTTHHFPSYLGVPSVLGRAHQDK 118
            +Y + +GQSIN +KS      K      + +    ++        YLG+P   GR  +D 
Sbjct: 646  KYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDI 705

Query: 117  FQPLVQRFRDRLAKWKTILLSKGGRLTLINSVLSALPS 4
            F  +V R R R   W    LS  G+  L+ +VLS++PS
Sbjct: 706  FSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPS 743


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score =  215 bits (548), Expect = 9e-54
 Identities = 103/277 (37%), Positives = 168/277 (60%)
 Frame = -2

Query: 837  MRPILLKIISPHQSAFLPNRSFHDNALLTHEAFHTIRSKYNLKQNYFALKLDLQKAYDKL 658
            ++  L  +IS  Q+AF+P ++  DN L+ HE  H+++S+   +  Y A+K D+ KAYD++
Sbjct: 887  LKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRV 946

Query: 657  EWGFLQKVLRAFGFDETFVRKIMFCVKSVSYSVLLNGSPFGYFYPTRGIRQGDPMSPYLF 478
            EW FL+KV+   GF   +V+ IM CV SVSY VL+NGSP+G  +P+RGIRQGDP+SPYLF
Sbjct: 947  EWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLF 1006

Query: 477  IICAEVLSLKLLELQSNSDYDGIKLARNCQPLTHLMYADDIIIYGKTDLKQAVDINKVLE 298
            + CAEVLS  L + + N    G+K+ ++C  ++HL++ADD + + +   +    +  + +
Sbjct: 1007 LFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFK 1066

Query: 297  EYCVVAGQSINRSKSQFIHHKKLHPKFAKLMFKIFKVPTTHHFPSYLGVPSVLGRAHQDK 118
            +Y   +GQ IN +KS  I  +K+     + + ++  +        YLG+P  LGR   + 
Sbjct: 1067 KYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVEL 1126

Query: 117  FQPLVQRFRDRLAKWKTILLSKGGRLTLINSVLSALP 7
            F+ +V + ++R   W    LS  G+  +I ++  ALP
Sbjct: 1127 FEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALP 1163


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score =  213 bits (542), Expect = 4e-53
 Identities = 100/270 (37%), Positives = 162/270 (60%)
 Frame = -2

Query: 816  IISPHQSAFLPNRSFHDNALLTHEAFHTIRSKYNLKQNYFALKLDLQKAYDKLEWGFLQK 637
            I+S  Q+AF+P R  +DN ++ HE  H+++++  + Q+Y A+K D+ KAYD++EW FL+ 
Sbjct: 914  IVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLET 973

Query: 636  VLRAFGFDETFVRKIMFCVKSVSYSVLLNGSPFGYFYPTRGIRQGDPMSPYLFIICAEVL 457
             +R FGF ET+++ IM  VKSV+YSVL+NG P G   P RGIRQGDP+SPYLFI+CA++L
Sbjct: 974  TMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADIL 1033

Query: 456  SLKLLELQSNSDYDGIKLARNCQPLTHLMYADDIIIYGKTDLKQAVDINKVLEEYCVVAG 277
            +  +    +  D  GI++      +THL +ADD + + +++++    +  V + Y   +G
Sbjct: 1034 NHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSG 1093

Query: 276  QSINRSKSQFIHHKKLHPKFAKLMFKIFKVPTTHHFPSYLGVPSVLGRAHQDKFQPLVQR 97
            Q IN SKS      ++H      +  I  + +      YLG+P   GR  +D F  +++R
Sbjct: 1094 QKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIER 1153

Query: 96   FRDRLAKWKTILLSKGGRLTLINSVLSALP 7
             + R + W    LS  G+  ++ SV  ++P
Sbjct: 1154 VKKRTSSWSAKYLSPAGKEIMLKSVAMSMP 1183


>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
            putative protein [Arabidopsis thaliana]
          Length = 1294

 Score =  213 bits (542), Expect = 4e-53
 Identities = 100/270 (37%), Positives = 162/270 (60%)
 Frame = -2

Query: 816  IISPHQSAFLPNRSFHDNALLTHEAFHTIRSKYNLKQNYFALKLDLQKAYDKLEWGFLQK 637
            I+S  Q+AF+P R  +DN ++ HE  H+++++  + Q+Y A+K D+ KAYD++EW FL+ 
Sbjct: 894  IVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLET 953

Query: 636  VLRAFGFDETFVRKIMFCVKSVSYSVLLNGSPFGYFYPTRGIRQGDPMSPYLFIICAEVL 457
             +R FGF ET+++ IM  VKSV+YSVL+NG P G   P RGIRQGDP+SPYLFI+CA++L
Sbjct: 954  TMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADIL 1013

Query: 456  SLKLLELQSNSDYDGIKLARNCQPLTHLMYADDIIIYGKTDLKQAVDINKVLEEYCVVAG 277
            +  +    +  D  GI++      +THL +ADD + + +++++    +  V + Y   +G
Sbjct: 1014 NHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSG 1073

Query: 276  QSINRSKSQFIHHKKLHPKFAKLMFKIFKVPTTHHFPSYLGVPSVLGRAHQDKFQPLVQR 97
            Q IN SKS      ++H      +  I  + +      YLG+P   GR  +D F  +++R
Sbjct: 1074 QKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIER 1133

Query: 96   FRDRLAKWKTILLSKGGRLTLINSVLSALP 7
             + R + W    LS  G+  ++ SV  ++P
Sbjct: 1134 VKKRTSSWSAKYLSPAGKEIMLKSVAMSMP 1163