BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000972
         (1263 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519077.1| ATP-dependent Clp protease proteolytic subun...   358   2e-96
ref|XP_003537887.1| PREDICTED: ATP-dependent Clp protease proteo...   356   6e-96
gb|ACU18559.1| unknown [Glycine max]                                  352   9e-95
gb|AFK45588.1| unknown [Lotus japonicus]                              351   2e-94
ref|XP_003541065.1| PREDICTED: ATP-dependent Clp protease proteo...   351   3e-94

>ref|XP_002519077.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis] gi|223541740|gb|EEF43288.1| ATP-dependent Clp
           protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 277

 Score =  358 bits (918), Expect = 2e-96
 Identities = 175/222 (78%), Positives = 190/222 (85%)
 Frame = +3

Query: 150 NNNTGLPFKFDDQIHHRPIHTSYGPIEAKKGNPPVMPAVMTPGGPLDLSSVLFRNRIIFI 329
           +  +GLP   D++  HR    SY  IEAKKGNPP+MPAVMTPGGPLDL SVLFRNRIIFI
Sbjct: 57  SRRSGLPLSIDEKNSHRATQ-SYITIEAKKGNPPIMPAVMTPGGPLDLQSVLFRNRIIFI 115

Query: 330 GQPINSQVAQRVISQLVTLATIDEDADILIYLNCPGGSTYSVLAIYDCMSWIKPKVGTVC 509
           GQPINSQVAQRVISQLVTLATIDE++DIL+YLNCPGGSTYSVLAIYDCMSWIKPKVGTVC
Sbjct: 116 GQPINSQVAQRVISQLVTLATIDENSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVC 175

Query: 510 FXXXXXXXXXXXXXXEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQARHKIDK 689
           F              EKGMRYAMPNARIMIHQPQ GCGGHVEDVRRQVNEAVQ+RHK+D+
Sbjct: 176 FGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQGGCGGHVEDVRRQVNEAVQSRHKVDR 235

Query: 690 MYAAFTGQPFEEIQNYTERDRFFSTSEALEFGLIDGVLETEY 815
           MYAAFTGQP E++Q YTERDRF STSEA+EFGLIDG+LETEY
Sbjct: 236 MYAAFTGQPLEKVQQYTERDRFLSTSEAMEFGLIDGILETEY 277


>ref|XP_003537887.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6,
           chloroplastic-like [Glycine max]
          Length = 273

 Score =  356 bits (914), Expect = 6e-96
 Identities = 181/238 (76%), Positives = 194/238 (81%)
 Frame = +3

Query: 102 SGTQNPRGLSFVSNNVNNNTGLPFKFDDQIHHRPIHTSYGPIEAKKGNPPVMPAVMTPGG 281
           S   NP G S      + + G P K D++  H    TSYG IEAK GNPP+ PAVMTPGG
Sbjct: 38  SSLPNPYGHSSGVGLSSKSRGFPLKLDEKNIHGA-STSYGAIEAK-GNPPITPAVMTPGG 95

Query: 282 PLDLSSVLFRNRIIFIGQPINSQVAQRVISQLVTLATIDEDADILIYLNCPGGSTYSVLA 461
           PLDLSSVLFRNRIIFIGQP+NSQVAQRVISQLVTLATIDE+ADIL+Y+NCPGGSTYSVLA
Sbjct: 96  PLDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDENADILVYINCPGGSTYSVLA 155

Query: 462 IYDCMSWIKPKVGTVCFXXXXXXXXXXXXXXEKGMRYAMPNARIMIHQPQSGCGGHVEDV 641
           IYDCMSWIKPKVGTVCF              EKGMRYAMPNARIMIHQPQSGCGGHVEDV
Sbjct: 156 IYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDV 215

Query: 642 RRQVNEAVQARHKIDKMYAAFTGQPFEEIQNYTERDRFFSTSEALEFGLIDGVLETEY 815
           RRQVNEAVQ+RHKIDKMY+ FTGQP E++Q YTERDRF S SEALEFGLIDGVLETEY
Sbjct: 216 RRQVNEAVQSRHKIDKMYSVFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 273


>gb|ACU18559.1| unknown [Glycine max]
          Length = 273

 Score =  352 bits (904), Expect = 9e-95
 Identities = 179/238 (75%), Positives = 192/238 (80%)
 Frame = +3

Query: 102 SGTQNPRGLSFVSNNVNNNTGLPFKFDDQIHHRPIHTSYGPIEAKKGNPPVMPAVMTPGG 281
           S   NP G S      + + G P K D++  H    TSYG IEAK GNPP+ PAVMTPGG
Sbjct: 38  SSLPNPYGHSSGVGLSSKSRGFPLKLDEKNIHGA-STSYGAIEAK-GNPPITPAVMTPGG 95

Query: 282 PLDLSSVLFRNRIIFIGQPINSQVAQRVISQLVTLATIDEDADILIYLNCPGGSTYSVLA 461
           PLDLSSVLFRNRIIFIGQP+NSQVAQRVISQLVTLATIDE+ADIL+Y+NCPGGSTYSVLA
Sbjct: 96  PLDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDENADILVYINCPGGSTYSVLA 155

Query: 462 IYDCMSWIKPKVGTVCFXXXXXXXXXXXXXXEKGMRYAMPNARIMIHQPQSGCGGHVEDV 641
           IYDCMSWIKPKVGTVCF              EKGMRYAMPNARIMIHQPQSGCGGHVEDV
Sbjct: 156 IYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDV 215

Query: 642 RRQVNEAVQARHKIDKMYAAFTGQPFEEIQNYTERDRFFSTSEALEFGLIDGVLETEY 815
           RRQVNEAVQ+RHKIDKMY+ FTGQP E++Q YTERDRF S  EALEFG IDGVLETEY
Sbjct: 216 RRQVNEAVQSRHKIDKMYSVFTGQPLEKVQQYTERDRFLSVFEALEFGFIDGVLETEY 273


>gb|AFK45588.1| unknown [Lotus japonicus]
          Length = 275

 Score =  351 bits (901), Expect = 2e-94
 Identities = 172/222 (77%), Positives = 189/222 (85%)
 Frame = +3

Query: 150 NNNTGLPFKFDDQIHHRPIHTSYGPIEAKKGNPPVMPAVMTPGGPLDLSSVLFRNRIIFI 329
           + + G P K D++  +    TSYG IEAKKGNPP+ PAVMTPGGPLDLSSVLFRNRIIFI
Sbjct: 55  SKSPGFPLKLDEKNTY-DASTSYGAIEAKKGNPPITPAVMTPGGPLDLSSVLFRNRIIFI 113

Query: 330 GQPINSQVAQRVISQLVTLATIDEDADILIYLNCPGGSTYSVLAIYDCMSWIKPKVGTVC 509
           GQP+N+QVAQRVISQLVTLATID +ADIL+Y+NCPGGSTYSVLAIYDCMSWIKPKVGTVC
Sbjct: 114 GQPVNAQVAQRVISQLVTLATIDPNADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVC 173

Query: 510 FXXXXXXXXXXXXXXEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQARHKIDK 689
           F              EKGMRY+MPN+RIMIHQPQSGCGGHVEDVRRQVNEAVQ+RHKIDK
Sbjct: 174 FGVAASQGALLLAGGEKGMRYSMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDK 233

Query: 690 MYAAFTGQPFEEIQNYTERDRFFSTSEALEFGLIDGVLETEY 815
           MY+AFTGQP E++Q YTERD F S SEALEFGLIDGVLETEY
Sbjct: 234 MYSAFTGQPIEKVQQYTERDHFLSVSEALEFGLIDGVLETEY 275


>ref|XP_003541065.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6,
           chloroplastic-like [Glycine max]
          Length = 273

 Score =  351 bits (900), Expect = 3e-94
 Identities = 178/238 (74%), Positives = 193/238 (81%)
 Frame = +3

Query: 102 SGTQNPRGLSFVSNNVNNNTGLPFKFDDQIHHRPIHTSYGPIEAKKGNPPVMPAVMTPGG 281
           S   NP G S      + + G P K D++  H    TSYG IEAK GNPP+ PAVMTPGG
Sbjct: 38  SSLPNPYGHSSEVGLSSKSRGFPLKHDEKNIHGA-STSYGAIEAK-GNPPITPAVMTPGG 95

Query: 282 PLDLSSVLFRNRIIFIGQPINSQVAQRVISQLVTLATIDEDADILIYLNCPGGSTYSVLA 461
           PLDL+SVLFRNRIIFIGQP+NSQVAQRVISQLVTLATI+E+ADIL+Y+NCPGGSTYSVLA
Sbjct: 96  PLDLTSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATINENADILVYINCPGGSTYSVLA 155

Query: 462 IYDCMSWIKPKVGTVCFXXXXXXXXXXXXXXEKGMRYAMPNARIMIHQPQSGCGGHVEDV 641
           IYDCMSWIKPKVGTVCF              EKGMRYAMPNARI IHQPQSGCGGHVEDV
Sbjct: 156 IYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARITIHQPQSGCGGHVEDV 215

Query: 642 RRQVNEAVQARHKIDKMYAAFTGQPFEEIQNYTERDRFFSTSEALEFGLIDGVLETEY 815
           RRQVNEAVQ+RHKIDKMY+ FTGQP E++Q YTERDRF S SEALEFGLIDGVLETEY
Sbjct: 216 RRQVNEAVQSRHKIDKMYSVFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 273